prot_H-canaliculatus_F_contig13019.2505.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig13019.2505.1
Unique Nameprot_H-canaliculatus_F_contig13019.2505.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length275
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13019.2505.1 vs. uniprot
Match: A0A6H5K0G0_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 9.240e-18
Identity = 79/166 (47.59%), Postives = 85/166 (51.20%), Query Frame = 0 
Query:  160 APSWSDTLERFLSENPGVEVFGVFGEGALPTPELL--------------------------------PSLSQSERPSAXXXXXXXXXXXXXTAVFGGGRVIEAVLWPVLSGSVPPTAVLSRARALWV------------------VGDGRERRAGEWMSDRFVAQV 275
            A SWSD LERFLSENPGV+VFG+FGEGALPT ELL                                           XXXXXXXXXXXXX      G  IE+VLWP+LS SVPPTAVLSRARA W                   V  G   RAGEW+SDRFV Q+
Sbjct:  331 ASSWSDVLERFLSENPGVDVFGMFGEGALPTAELLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGNTIESVLWPILSRSVPPTAVLSRARA-WXXXXXXXXXXXXXVXXXGGVFGGGAGRAGEWISDRFVGQM 495
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13019.2505.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0G0_9PHAE9.240e-1847.59Nucleotid_trans domain-containing protein n=1 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..275

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13019contigH-canaliculatus_F_contig13019:134..1825 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13019.2505.1mRNA_H-canaliculatus_F_contig13019.2505.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig13019 134..1825 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig13019.2505.1 ID=prot_H-canaliculatus_F_contig13019.2505.1|Name=mRNA_H-canaliculatus_F_contig13019.2505.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=275bp
AAAAASLASAVATARSTALLVAIDAGPEGRAALSIWSDFVLAARSRGRGL
AAAAAAAAAVAVRDSAGQQRPGVGVADGRSAAGGRAEREEDGGIELSLVP
ASEVFPSVWIITSDPAVDRAVREEMPHLSSFFVPGLLDDGGHGGGGGSEP
GGEGAGRAAAPSWSDTLERFLSENPGVEVFGVFGEGALPTPELLPSLSQS
ERPSAAAAAASGGDGGGGTAVFGGGRVIEAVLWPVLSGSVPPTAVLSRAR
ALWVVGDGRERRAGEWMSDRFVAQV
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