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Homology
BLAST of mRNA_H-canaliculatus_F_contig13019.2505.1 vs. uniprot
Match: A0A6H5K0G0_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G0_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 9.240e-18 Identity = 79/166 (47.59%), Postives = 85/166 (51.20%), Query Frame = 1
Query: 478 APSWSDTLERFLSENPGVEVFGVFGEGALPTPELL--------------------------------PSLSQSERPSAXXXXXXXXXXXXXTAVFGGGRVIEAVLWPVLSGSVPPTAVLSRARALWV------------------VGDGRERRAGEWMSDRFVAQV 825
A SWSD LERFLSENPGV+VFG+FGEGALPT ELL XXXXXXXXXXXXX G IE+VLWP+LS SVPPTAVLSRARA W V G RAGEW+SDRFV Q+
Sbjct: 331 ASSWSDVLERFLSENPGVDVFGMFGEGALPTAELLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGNTIESVLWPILSRSVPPTAVLSRARA-WXXXXXXXXXXXXXVXXXGGVFGGGAGRAGEWISDRFVGQM 495
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 5 |
| Model size | 825 |
| Cds size | 825 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929035.4491892-CDS-H-canaliculatus_F_contig13019:133..355 | 1622929035.4491892-CDS-H-canaliculatus_F_contig13019:133..355 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13019 134..355 + |
| 1696845655.8681545-CDS-H-canaliculatus_F_contig13019:133..355 | 1696845655.8681545-CDS-H-canaliculatus_F_contig13019:133..355 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13019 134..355 + |
| 1622929035.4637372-CDS-H-canaliculatus_F_contig13019:514..764 | 1622929035.4637372-CDS-H-canaliculatus_F_contig13019:514..764 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13019 515..764 + |
| 1696845655.8787382-CDS-H-canaliculatus_F_contig13019:514..764 | 1696845655.8787382-CDS-H-canaliculatus_F_contig13019:514..764 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13019 515..764 + |
| 1622929035.4779024-CDS-H-canaliculatus_F_contig13019:1283..1466 | 1622929035.4779024-CDS-H-canaliculatus_F_contig13019:1283..1466 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13019 1284..1466 + |
| 1696845655.8888807-CDS-H-canaliculatus_F_contig13019:1283..1466 | 1696845655.8888807-CDS-H-canaliculatus_F_contig13019:1283..1466 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13019 1284..1466 + |
| 1622929035.4999788-CDS-H-canaliculatus_F_contig13019:1553..1683 | 1622929035.4999788-CDS-H-canaliculatus_F_contig13019:1553..1683 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13019 1554..1683 + |
| 1696845655.8979354-CDS-H-canaliculatus_F_contig13019:1553..1683 | 1696845655.8979354-CDS-H-canaliculatus_F_contig13019:1553..1683 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13019 1554..1683 + |
| 1622929035.5344868-CDS-H-canaliculatus_F_contig13019:1785..1825 | 1622929035.5344868-CDS-H-canaliculatus_F_contig13019:1785..1825 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13019 1786..1825 + |
| 1696845655.906851-CDS-H-canaliculatus_F_contig13019:1785..1825 | 1696845655.906851-CDS-H-canaliculatus_F_contig13019:1785..1825 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13019 1786..1825 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13019.2505.1 >prot_H-canaliculatus_F_contig13019.2505.1 ID=prot_H-canaliculatus_F_contig13019.2505.1|Name=mRNA_H-canaliculatus_F_contig13019.2505.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=275bp
AAAAASLASAVATARSTALLVAIDAGPEGRAALSIWSDFVLAARSRGRGL
AAAAAAAAAVAVRDSAGQQRPGVGVADGRSAAGGRAEREEDGGIELSLVP
ASEVFPSVWIITSDPAVDRAVREEMPHLSSFFVPGLLDDGGHGGGGGSEP
GGEGAGRAAAPSWSDTLERFLSENPGVEVFGVFGEGALPTPELLPSLSQS
ERPSAAAAAASGGDGGGGTAVFGGGRVIEAVLWPVLSGSVPPTAVLSRAR
ALWVVGDGRERRAGEWMSDRFVAQV back to topmRNA from alignment at H-canaliculatus_F_contig13019:134..1825+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig13019.2505.1 ID=mRNA_H-canaliculatus_F_contig13019.2505.1|Name=mRNA_H-canaliculatus_F_contig13019.2505.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1692bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13019:134..1825+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGCCGCGGCCGCGAGCCTCGCGTCCGCAGTGGCGACCGCGAGGTCGAC
GGCTCTCCTGGTGGCGATCGACGCCGGGCCGGAGGGGCGAGCAGCGCTGA
GCATCTGGTCGGATTTCGTGCTGGCCGCACGGAGCCGCGGCAGGGGATTG
GCCGCTGCCGCCGCCGCCGCCGCCGCCGTGGCCGTCCGCGATAGCGCGGG
CCAGCAGCGGCCGGGCGTCGGCGTCATCGACAATGGCGGCGGCGGCGGCG
GGATCGGCGGGATCGGGGATGTTTCAGGAGGGGAGGCGGACGGCGGCTGG
GGGTGGCCCTGGGGCCGGTTCGGCGTTGGGGGTGGGTCCCGGGTCCGGAA
GAGAGAGCGAGAGGCGGCGACAGCGGTAGAGGTTGCGGACGGAAGGAGCG
CCGCCGGCGGGAGGGCGGAGCGCGAGGAAGACGGCGGGATCGAGCTCTCC
CTCGTTCCCGCGTCCGAGGTGTTCCCCTCCGTGTGGATCATCACGTCCGA
CCCGGCGGTGGACAGGGCCGTCAGGGAAGAAATGCCCCACCTGTCCTCGT
TTTTCGTCCCGGGCTTGCTCGATGACGGCGGCCACGGCGGCGGCGGTGGT
TCGGAGCCGGGGGGCGAGGGGGCCGGGCGGGGTCCGCCGGAGGCGGCAGC
GGCGTTAGAAGCAGGGGCTTCGGCGGCGGCAACCCCGAGGTCGTCCGGAC
AAAGAGGCGCGGAGGGAGGCGGAGGCCCGGGAAGAAACCTGGGGGCAGCA
AGGGTTGGAGGTGCGGCGAACTCGACAGGAACGGTCGCAGCGGGAGCAGC
GTCGGCGGCGGTAGACGATGCGCGGCCTCCGTCGGGAGCGAGAGCTTCCG
CCGCCGCACCTGTTCCGGCAGCACCAGCGGGAGCGGAAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCACCAGCAGCACCAGCACCAGCAGCAGAAGCAGC
TGTTCCGGCAGACGCAGCAGACGCCGCCGCCGCCGCAGTTATCACTCGAG
CAGGACCAAGCAGGAGGACGACGGCTATGGGGGCAGGTCGCCGAGTCGGA
GACGGCAGTCCCCCCCACCCGTCCGCCTATCCCAGCGGCGGCGGCGGCGA
GGGCGGCGGCGCCCCCCTCTCTCAGCCCACGACGCCGTCGCCGCCGCCAG
CGGCGGCGCCGTCCTGGTCGGACACCCTGGAGCGCTTCCTATCGGAGAAC
CCCGGCGTGGAAGTCTTCGGCGTCTTCGGAGAGGGGGCGCTGCCCACTCC
GGAGCTGCTTCCTTCTCTGTCGCAGTCGGAACGCCCCTCCGCCGCCGCCG
CCGCCGCCTCCGGTGGCGACGGCGGCGGCGGCAGTGGCGGCGGCGGCGGT
AATGGCGGTGATCGTGGTGGTGCAGAAGGAGGAGGAGGACGGAGGGGCCT
CGCCGAGAGCAGCGGGGGAGCGGCCGTCTTCGGCGGCGGTCGGGTCATCG
AGGCGGTCCTGTGGCCGGTGCTCTCGGGTTCCGTCCCGCCGACCGCCGTG
CTCTCCCGCGCCCGCGCGCTCTGGGTGGTCGGGGATGGGAGGGAACGGCG
GTGGCAGGAGGAAGGCGAGGGGGAGGATAGTAGTGGGATGGGGGGGGACG
GCGACGGCGACGGCGGCAGCGGTGACGGTGCAGGAGGCCGGGGCGCTGCG
AGGGCGGGGGAGTGGATGTCCGACAGATTCGTGGCGCAGGTG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig13019:134..1825+ >mRNA_H-canaliculatus_F_contig13019.2505.1 ID=mRNA_H-canaliculatus_F_contig13019.2505.1|Name=mRNA_H-canaliculatus_F_contig13019.2505.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1650bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13019:134..1825+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGCCGCGGCCGCGAGCCTCGCGTCCGCAGTGGCGACCGCGAGGTCGAC
GGCTCTCCTGGTGGCGATCGACGCCGGGCCGGAGGGGCGAGCAGCGCTGA
GCATCTGGTCGGATTTCGTGCTGGCCGCACGGAGCCGCGGCAGGGGATTG
GCCGCTGCCGCCGCCGCCGCCGCCGCCGTGGCCGTCCGCGATAGCGCGGG
CCAGCAGCGGCCGGGCGTCGGCGCCGCCGCGGCCGCGAGCCTCGCGTCCG
CAGTGGCGACCGCGAGGTCGACGGCTCTCCTGGTGGCGATCGACGCCGGG
CCGGAGGGGCGAGCAGCGCTGAGCATCTGGTCGGATTTCGTGCTGGCCGC
ACGGAGCCGCGGCAGGGGATTGGCCGCTGCCGCCGCCGCCGCCGCCGCCG
TGGCCGTCCGCGATAGCGCGGGCCAGCAGCGGCCGGGCGTCGGCGTTGCG
GACGGAAGGAGCGCCGCCGGCGGGAGGGCGGAGCGCGAGGAAGACGGCGG
GATCGAGCTCTCCCTCGTTCCCGCGTCCGAGGTGTTCCCCTCCGTGTGGA
TCATCACGTCCGACCCGGCGGTGGACAGGGCCGTCAGGGAAGAAATGCCC
CACCTGTCCTCGTTTTTCGTCCCGGGCTTGCTCGATGACGGCGGCCACGG
CGGCGGCGGTGGTTCGGAGCCGGGGGGCGAGGGGGCCGGGCGGGGTTGCG
GACGGAAGGAGCGCCGCCGGCGGGAGGGCGGAGCGCGAGGAAGACGGCGG
GATCGAGCTCTCCCTCGTTCCCGCGTCCGAGGTGTTCCCCTCCGTGTGGA
TCATCACGTCCGACCCGGCGGTGGACAGGGCCGTCAGGGAAGAAATGCCC
CACCTGTCCTCGTTTTTCGTCCCGGGCTTGCTCGATGACGGCGGCCACGG
CGGCGGCGGTGGTTCGGAGCCGGGGGGCGAGGGGGCCGGGCGGGCGGCGG
CGCCGTCCTGGTCGGACACCCTGGAGCGCTTCCTATCGGAGAACCCCGGC
GTGGAAGTCTTCGGCGTCTTCGGAGAGGGGGCGCTGCCCACTCCGGAGCT
GCTTCCTTCTCTGTCGCAGTCGGAACGCCCCTCCGCCGCCGCCGCCGCCG
CCTCCGGTGGCGACGGCGGCGGCGGCACGGCGGCGCCGTCCTGGTCGGAC
ACCCTGGAGCGCTTCCTATCGGAGAACCCCGGCGTGGAAGTCTTCGGCGT
CTTCGGAGAGGGGGCGCTGCCCACTCCGGAGCTGCTTCCTTCTCTGTCGC
AGTCGGAACGCCCCTCCGCCGCCGCCGCCGCCGCCTCCGGTGGCGACGGC
GGCGGCGGCACGGCCGTCTTCGGCGGCGGTCGGGTCATCGAGGCGGTCCT
GTGGCCGGTGCTCTCGGGTTCCGTCCCGCCGACCGCCGTGCTCTCCCGCG
CCCGCGCGCTCTGGGTGGTCGGGGATGGGAGGGAACGGCGCGGCCGTCTT
CGGCGGCGGTCGGGTCATCGAGGCGGTCCTGTGGCCGGTGCTCTCGGGTT
CCGTCCCGCCGACCGCCGTGCTCTCCCGCGCCCGCGCGCTCTGGGTGGTC
GGGGATGGGAGGGAACGGCGGGCGGGGGAGTGGATGTCCGACAGATTCGT
GGCGCAGGTGGGCGGGGGAGTGGATGTCCGACAGATTCGTGGCGCAGGTG back to top
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