mRNA_H-canaliculatus_F_contig13007.2500.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13007.2500.1
Unique NamemRNA_H-canaliculatus_F_contig13007.2500.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13007.2500.1 vs. uniprot
Match: A0A6H5LAB3_9PHAE (FHA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAB3_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.190e-25
Identity = 106/222 (47.75%), Postives = 122/222 (54.95%), Query Frame = 1 
Query:    1 ITTAGASIGQSDDNTVSIPSDSMLAPLNHAIVKYEEYSRRGASNASSRLSDKAXXXXXXXXXXXXXLVAAPXXXXXXXEQACSGGDDGVNSNEEALAAKGGPTPVSDAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEAGGPTGGAVSNARERERGREVGGFFFSDGGQETDFAAAFRIRVGEGNRDWPLTQGSHFSAGLTVFRAHRTGPQSNNQHHD 666
            I+TAGASIGQS DNT+SIPSDSMLAPLNHA+V YE ++R G++N      DK XX                           +GGD G +     +  +G    + D G               XXXXXXXXXXXX    E+ GG            ERGR  GGFFFSDGGQ TDFAAAFRIRVG+GNR+W    G HFSAGLTVFRAH T P S   + D
Sbjct:  166 ISTAGASIGQSADNTLSIPSDSMLAPLNHALVTYE-HARGGSNN-----DDKGXXGTGSCSNGVGRNAVLGT--------GVNGGDGGSSGR---VREEGDTNDLHDGG---------DRGRDGXXXXXXXXXXXXSADAEDRGG-----------LERGR--GGFFFSDGGQGTDFAAAFRIRVGKGNREWRT--GCHFSAGLTVFRAHLTKPTSGESNDD 346
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BLAST of mRNA_H-canaliculatus_F_contig13007.2500.1 vs. uniprot
Match: D7FNP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP5_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.100e-11
Identity = 97/198 (48.99%), Postives = 104/198 (52.53%), Query Frame = 1 
Query:    1 ITTAGASIGQSDDNTVSIPSDSMLAPLNHAIVKYEEYSRRGASNASSRLSDKAXXXXXXXXXXXXXLVAAPXXXXXXXEQACSGGDDGVNSNEEALAAKGGPTPVSDAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEAGGPTGGAVSNARERERGREVGGFFFSDGGQETDFAAAFRIRVGEGNRDWPLTQGS 594
            I+TAGASIGQS+DNTVSIPSDSMLAPLNHA+V YE      A   S       XXX          +V              +GGD G +          G     D G   XXXXXXXXXXXXXXXXXXXXXXXXXXX                             SDGGQ TDFAAAFRIRVGEGNR+W LTQ S
Sbjct:   43 ISTAGASIGQSEDNTVSIPSDSMLAPLNHAMVTYEH-----ARGGSXXXXXXXXXXRSRGDGGGRDVVPGA---------GVNGGDGGSSGGVREGDDTNGLHDSGDRGRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------SDGGQGTDFAAAFRIRVGEGNREWRLTQAS 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13007.2500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAB3_9PHAE3.190e-2547.75FHA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FNP5_ECTSI1.100e-1148.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13007contigH-canaliculatus_F_contig13007:1400..3214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1013
Cds size1011
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13007.2500.1prot_H-canaliculatus_F_contig13007.2500.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13007 1400..3214 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929034.7952285-CDS-H-canaliculatus_F_contig13007:1399..15121622929034.7952285-CDS-H-canaliculatus_F_contig13007:1399..1512Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13007 1400..1512 -
1696845655.57244-CDS-H-canaliculatus_F_contig13007:1399..15121696845655.57244-CDS-H-canaliculatus_F_contig13007:1399..1512Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13007 1400..1512 -
1622929034.8128753-CDS-H-canaliculatus_F_contig13007:1533..16841622929034.8128753-CDS-H-canaliculatus_F_contig13007:1533..1684Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13007 1534..1684 -
1696845655.5815704-CDS-H-canaliculatus_F_contig13007:1533..16841696845655.5815704-CDS-H-canaliculatus_F_contig13007:1533..1684Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13007 1534..1684 -
1622929034.8248148-CDS-H-canaliculatus_F_contig13007:2028..21871622929034.8248148-CDS-H-canaliculatus_F_contig13007:2028..2187Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13007 2029..2187 -
1696845655.5950823-CDS-H-canaliculatus_F_contig13007:2028..21871696845655.5950823-CDS-H-canaliculatus_F_contig13007:2028..2187Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13007 2029..2187 -
1622929034.8376777-CDS-H-canaliculatus_F_contig13007:2626..32141622929034.8376777-CDS-H-canaliculatus_F_contig13007:2626..3214Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13007 2627..3214 -
1696845655.6054456-CDS-H-canaliculatus_F_contig13007:2626..32141696845655.6054456-CDS-H-canaliculatus_F_contig13007:2626..3214Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13007 2627..3214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13007.2500.1

>prot_H-canaliculatus_F_contig13007.2500.1 ID=prot_H-canaliculatus_F_contig13007.2500.1|Name=mRNA_H-canaliculatus_F_contig13007.2500.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=337bp
ITTAGASIGQSDDNTVSIPSDSMLAPLNHAIVKYEEYSRRGASNASSRLS
DKAGGEGGGGTGGVRGLVAAPAPAPAPAEQACSGGDDGVNSNEEALAAKG
GPTPVSDAGGGGGGGGTGGAGSGAAEGVERNRDDDDDNDGEEAGGPTGGA
VSNARERERGREVGGFFFSDGGQETDFAAAFRIRVGEGNRDWPLTQGSHF
SAGLTVFRAHRTGPQSNNQHHDADSDPPPVSPVTAASADRAAPTDIAAES
VVDAATRKEAKNGADSPSSSSSGSSSTNKEPGGIEAMSKVEASGGGGGGD
GDGATTRAEEETTTRGDGCRGGGGGGGGGGSGDGGTG
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mRNA from alignment at H-canaliculatus_F_contig13007:1400..3214-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13007.2500.1 ID=mRNA_H-canaliculatus_F_contig13007.2500.1|Name=mRNA_H-canaliculatus_F_contig13007.2500.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1815bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13007:1400..3214- (Hapterophycus canaliculatus Oshoro5f female)
ATCACGACGGCGGGGGCCAGCATCGGCCAGTCCGATGATAACACCGTCTC
CATCCCGTCCGACAGCATGCTGGCCCCTCTCAACCACGCAATAGTCAAGT
ACGAGGAGTATAGTCGCCGGGGCGCCAGCAACGCTAGCAGTCGCCTCTCC
GATAAAGCCGGAGGCGAGGGTGGCGGCGGCACCGGCGGGGTTAGGGGGCT
CGTTGCAGCACCAGCACCGGCACCGGCACCAGCCGAACAGGCCTGCAGCG
GAGGTGACGACGGTGTCAACTCTAATGAGGAGGCGTTGGCGGCGAAGGGG
GGACCGACGCCGGTGTCCGACGCAGGCGGTGGGGGTGGCGGTGGCGGAAC
AGGCGGGGCCGGGTCGGGCGCAGCCGAGGGGGTCGAGAGGAATAGAGACG
ACGACGACGACAACGACGGCGAAGAAGCTGGCGGTCCAACCGGAGGCGCC
GTCTCCAACGCCCGCGAACGAGAGCGGGGTAGAGAAGTCGGGGGGTTCTT
CTTCTCCGACGGTGGACAGGAGACTGACTTCGCGGCGGCTTTCCGAATAC
GCGTGGGAGAGGGGAACCGCGACTGGCCCTTGACTCAGGTCTCTTTCTCC
TGGGTGCTCCATGCACGTGTTGTTGATGTCCTTGGTGGTGGTCCAGATTG
TGGTGGTGATATTGGTGGTGGTAGTGGTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTCTTGTGGTTTCCGACCTTGGCTTTCGATCGTGCGTT
GCTCGATCGCCTCCCGAGGAGCACCAGTCCGTCACCTGGAGAGGCCTTGC
CTTTTCTGCTGTGCACTGCCATACACAGCTTTCTGGTGAAAATGGGCCAC
CAGCTCTTGTAGTCATTTGTGGAACACGTTAAAACAAAATTCAGCTGCGC
GTATCATAAATGTTCTTGTCATCCGAGCGCCGATTCCCCCATCTTGGGAA
TGTCGCTCGCCGCTTCGGCCTCTGACTTGCACCTGCCATGTGCTTGCTTA
TTTCCTTGCTTGCGTCCTTGCTCAAAGGGCTCGCACTTCTCCGCCGGACT
TACCGTGTTCCGGGCGCATCGCACGGGGCCGCAAAGCAACAACCAGCATC
ATGACGCTGACAGCGATCCACCACCCGTATCGCCAGTGACTGCTGCGAGC
GCGGATAGAGCTGCGCCAACAGATATTGCGGCAGAGGTACGACAGGAGGG
AGTGCGGCCTGTGCTTCGCAGCCGCCGCTACTTCCACTGCTGCGTGTCGT
TTGAGGAGGGTGGTGATGCCGCTGCGGTTGAGGTGCTGGCCGCGGTTCGA
TTTCACTACCGTACGTCGTAAAGGTGTTGAGAGTTTTTTTTTGGGGGGGG
GGAAATGGCTGCCATGGTCTTCGGGTGTCTCGGTTCGAAAATAACGCGGC
CGTCCGCGGAGCTCCCCCCCCCTCCTCCCTCTCTCTTTGACTTGCTCGCC
GAGCCGGCTGCACCCAAGGGGCTCAGGGAATGAAGATCGCTCCTCGTCTT
CTCTCGTCCCGTCTCGTCCGCTTCTCACAGAGTGTTGTCGATGCCGCCAC
GAGAAAAGAAGCCAAGAACGGCGCCGATAGCCCTAGCAGCAGCAGCAGCG
GCAGCAGCAGCACCAACAAGGAACCCGGCGGTATTGAAGCGATGTCGAAG
GTCGAAGCGAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGG
CGACGGCGACGGCGCAACCACCCGCGCCGAGGAAGAAACAACAACCCGAG
GGGATGGTTGCAGAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTGGA
GACGGCGGTACTGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13007:1400..3214-

>mRNA_H-canaliculatus_F_contig13007.2500.1 ID=mRNA_H-canaliculatus_F_contig13007.2500.1|Name=mRNA_H-canaliculatus_F_contig13007.2500.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2022bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13007:1400..3214- (Hapterophycus canaliculatus Oshoro5f female)
ATCACGACGGCGGGGGCCAGCATCGGCCAGTCCGATGATAACACCGTCTC
CATCCCGTCCGACAGCATGCTGGCCCCTCTCAACCACGCAATAGTCAAGT
ACGAGGAGTATAGTCGCCGGGGCGCCAGCAACGCTAGCAGTCGCCTCTCC
GATAAAGCCGGAGGCGAGGGTGGCGGCGGCACCGGCGGGGTTAGGGGGCT
CGTTGCAGCACCAGCACCGGCACCGGCACCAGCCGAACAGGCCTGCAGCG
GAGGTGACGACGGTGTCAACTCTAATGAGGAGGCGTTGGCGGCGAAGGGG
GGACCGACGCCGGTGTCCGACGCAGGCGGTGGGGGTGGCGGTGGCGGAAC
AGGCGGGGCCGGGTCGGGCGCAGCCGAGGGGGTCGAGAGGAATAGAGACG
ACGACGACGACAACGACGGCGAAGAAGCTGGCGGTCCAACCGGAGGCGCC
GTCTCCAACGCCCGCGAACGAGAGCGGGGTAGAGAAGTCGGGGGGTTCTT
CTTCTCCGACGGTGGACAGGAGACTGACTTCGCGGCGGCTTTCCGAATAC
GCGTGGGAGAGGGGAACCGCGACTGGCCCTTGACTCAGATCACGACGGCG
GGGGCCAGCATCGGCCAGTCCGATGATAACACCGTCTCCATCCCGTCCGA
CAGCATGCTGGCCCCTCTCAACCACGCAATAGTCAAGTACGAGGAGTATA
GTCGCCGGGGCGCCAGCAACGCTAGCAGTCGCCTCTCCGATAAAGCCGGA
GGCGAGGGTGGCGGCGGCACCGGCGGGGTTAGGGGGCTCGTTGCAGCACC
AGCACCGGCACCGGCACCAGCCGAACAGGCCTGCAGCGGAGGTGACGACG
GTGTCAACTCTAATGAGGAGGCGTTGGCGGCGAAGGGGGGACCGACGCCG
GTGTCCGACGCAGGCGGTGGGGGTGGCGGTGGCGGAACAGGCGGGGCCGG
GTCGGGCGCAGCCGAGGGGGTCGAGAGGAATAGAGACGACGACGACGACA
ACGACGGCGAAGAAGCTGGCGGTCCAACCGGAGGCGCCGTCTCCAACGCC
CGCGAACGAGAGCGGGGTAGAGAAGTCGGGGGGTTCTTCTTCTCCGACGG
TGGACAGGAGACTGACTTCGCGGCGGCTTTCCGAATACGCGTGGGAGAGG
GGAACCGCGACTGGCCCTTGACTCAGGGCTCGCACTTCTCCGCCGGACTT
ACCGTGTTCCGGGCGCATCGCACGGGGCCGCAAAGCAACAACCAGCATCA
TGACGCTGACAGCGATCCACCACCCGTATCGCCAGTGACTGCTGCGAGCG
CGGATAGAGCTGCGCCAACAGATATTGCGGCAGAGGGCTCGCACTTCTCC
GCCGGACTTACCGTGTTCCGGGCGCATCGCACGGGGCCGCAAAGCAACAA
CCAGCATCATGACGCTGACAGCGATCCACCACCCGTATCGCCAGTGACTG
CTGCGAGCGCGGATAGAGCTGCGCCAACAGATATTGCGGCAGAGAGTGTT
GTCGATGCCGCCACGAGAAAAGAAGCCAAGAACGGCGCCGATAGCCCTAG
CAGCAGCAGCAGCGGCAGCAGCAGCACCAACAAGGAACCCGGCGGTATTG
AAGCGATGTCGAAGGTCGAAGCGAGCGGCGGCGGCGGCGGCGGCGAGTGT
TGTCGATGCCGCCACGAGAAAAGAAGCCAAGAACGGCGCCGATAGCCCTA
GCAGCAGCAGCAGCGGCAGCAGCAGCACCAACAAGGAACCCGGCGGTATT
GAAGCGATGTCGAAGGTCGAAGCGAGCGGCGGCGGCGGCGGCGGCGACGG
CGACGGCGCAACCACCCGCGCCGAGGAAGAAACAACAACCCGAGGGGATG
GTTGCAGAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTGGAGACGGC
GGTACTGGCACGGCGACGGCGCAACCACCCGCGCCGAGGAAGAAACAACA
ACCCGAGGGGATGGTTGCAGAGGTGGTGGTGGTGGTGGTGGTGGTGGTGG
TAGTGGAGACGGCGGTACTGGC
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