mRNA_H-canaliculatus_F_contig130.2496.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig130.2496.1
Unique NamemRNA_H-canaliculatus_F_contig130.2496.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig130.2496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig130contigH-canaliculatus_F_contig130:61894..62566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size675
Cds size420
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929031.5900261-UTR-H-canaliculatus_F_contig130:61893..621461622929031.5900261-UTR-H-canaliculatus_F_contig130:61893..62146Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig130 61894..62146 +
1696845654.5364223-UTR-H-canaliculatus_F_contig130:61893..621461696845654.5364223-UTR-H-canaliculatus_F_contig130:61893..62146Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig130 61894..62146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929031.601716-CDS-H-canaliculatus_F_contig130:62146..625661622929031.601716-CDS-H-canaliculatus_F_contig130:62146..62566Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig130 62147..62566 +
1696845654.554086-CDS-H-canaliculatus_F_contig130:62146..625661696845654.554086-CDS-H-canaliculatus_F_contig130:62146..62566Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig130 62147..62566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig130.2496.1prot_H-canaliculatus_F_contig130.2496.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig130 62147..62566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig130.2496.1

>prot_H-canaliculatus_F_contig130.2496.1 ID=prot_H-canaliculatus_F_contig130.2496.1|Name=mRNA_H-canaliculatus_F_contig130.2496.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=140bp
MELMGFEYLAVDQDKVAMDIAKEHKIEWAGISSSSLPTAPETGRLLSNVL
EQLPVFSWRVISNKPEGGFQQAGKLNFCRTSLASTFCFLLIFCTVCCCFY
RPYVFQVGACPKKRRCHRQQRASWRGNPRSGGMEGGAVKA
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mRNA from alignment at H-canaliculatus_F_contig130:61894..62566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig130.2496.1 ID=mRNA_H-canaliculatus_F_contig130.2496.1|Name=mRNA_H-canaliculatus_F_contig130.2496.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=673bp|location=Sequence derived from alignment at H-canaliculatus_F_contig130:61894..62566+ (Hapterophycus canaliculatus Oshoro5f female)
TTACTGGGAGGAGGAAAAAATCCGCAAGTTGTCATCGAATGTTGCTGGTC
CGTCCCCCGGAGGAAACCTGGCGATTCCACCAGAGGTGATCGAACCTACG
ATTTGGAATACCACATTTTTTCGCACACATTTAACCTCGATATGTGAACG
TGCAACCTGGGCGACTTTGTACTCCTGTTTATGTACTACTCGTTTCCTCG
CCCGCTATTATTGTTGTTTGCTTCTCGGACGACGGTAGGTGCCTGATGCA
GCGATGGAGTTAATGGGGTTTGAGTATCTCGCCGTCGATCAAGATAAGGT
CGCGATGGACATCGCGAAAGAGCACAAGATTGAATGGGCGGGGATATCTT
CCAGTTCGCTCCCAACGGCACCTGAGACAGGTAGGTTGTTGTCAAACGTT
CTCGAGCAGCTTCCGGTTTTCAGCTGGAGGGTGATTTCCAACAAGCCGGA
GGGTGGTTTCCAACAAGCCGGAAAGCTGAATTTCTGCAGGACGTCGCTTG
CAAGCACTTTCTGTTTTTTACTCATTTTTTGTACTGTTTGTTGTTGTTTT
TATCGCCCGTACGTTTTTCAGGTGGGGGCTTGTCCGAAGAAACGGAGGTG
CCATCGGCAGCAGCGCGCGAGTTGGCGGGGGAACCCTCGTTCGGGCGGCA
TGGAGGGAGGGGCCGTGAAGGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig130:61894..62566+

>mRNA_H-canaliculatus_F_contig130.2496.1 ID=mRNA_H-canaliculatus_F_contig130.2496.1|Name=mRNA_H-canaliculatus_F_contig130.2496.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig130:61894..62566+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGTTAATGGGGTTTGAGTATCTCGCCGTCGATCAAGATAAGGTCGC
GATGGACATCGCGAAAGAGCACAAGATTGAATGGGCGGGGATATCTTCCA
GTTCGCTCCCAACGGCACCTGAGACAGGTAGGTTGTTGTCAAACGTTCTC
GAGCAGCTTCCGGTTTTCAGCTGGAGGGTGATTTCCAACAAGCCGGAGGG
TGGTTTCCAACAAGCCGGAAAGCTGAATTTCTGCAGGACGTCGCTTGCAA
GCACTTTCTGTTTTTTACTCATTTTTTGTACTGTTTGTTGTTGTTTTTAT
CGCCCGTACGTTTTTCAGGTGGGGGCTTGTCCGAAGAAACGGAGGTGCCA
TCGGCAGCAGCGCGCGAGTTGGCGGGGGAACCCTCGTTCGGGCGGCATGG
AGGGAGGGGCCGTGAAGGCTATGGAGTTAATGGGGTTTGAGTATCTCGCC
GTCGATCAAGATAAGGTCGCGATGGACATCGCGAAAGAGCACAAGATTGA
ATGGGCGGGGATATCTTCCAGTTCGCTCCCAACGGCACCTGAGACAGGTA
GGTTGTTGTCAAACGTTCTCGAGCAGCTTCCGGTTTTCAGCTGGAGGGTG
ATTTCCAACAAGCCGGAGGGTGGTTTCCAACAAGCCGGAAAGCTGAATTT
CTGCAGGACGTCGCTTGCAAGCACTTTCTGTTTTTTACTCATTTTTTGTA
CTGTTTGTTGTTGTTTTTATCGCCCGTACGTTTTTCAGGTGGGGGCTTGT
CCGAAGAAACGGAGGTGCCATCGGCAGCAGCGCGCGAGTTGGCGGGGGAA
CCCTCGTTCGGGCGGCATGGAGGGAGGGGCCGTGAAGGCT
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