mRNA_H-canaliculatus_F_contig130.2495.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig130.2495.1
Unique NamemRNA_H-canaliculatus_F_contig130.2495.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig130.2495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig130contigH-canaliculatus_F_contig130:61392..62568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size815
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig130.2495.1prot_H-canaliculatus_F_contig130.2495.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig130 61539..62156 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929031.4773035-UTR-H-canaliculatus_F_contig130:61391..615381622929031.4773035-UTR-H-canaliculatus_F_contig130:61391..61538Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig130 61392..61538 +
1696845654.4642296-UTR-H-canaliculatus_F_contig130:61391..615381696845654.4642296-UTR-H-canaliculatus_F_contig130:61391..61538Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig130 61392..61538 +
1622929031.5126631-UTR-H-canaliculatus_F_contig130:62156..622731622929031.5126631-UTR-H-canaliculatus_F_contig130:62156..62273Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig130 62157..62273 +
1696845654.5003278-UTR-H-canaliculatus_F_contig130:62156..622731696845654.5003278-UTR-H-canaliculatus_F_contig130:62156..62273Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig130 62157..62273 +
1622929031.524622-UTR-H-canaliculatus_F_contig130:62482..625681622929031.524622-UTR-H-canaliculatus_F_contig130:62482..62568Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig130 62483..62568 +
1696845654.5091765-UTR-H-canaliculatus_F_contig130:62482..625681696845654.5091765-UTR-H-canaliculatus_F_contig130:62482..62568Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig130 62483..62568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929031.4874406-CDS-H-canaliculatus_F_contig130:61538..619781622929031.4874406-CDS-H-canaliculatus_F_contig130:61538..61978Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig130 61539..61978 +
1696845654.475663-CDS-H-canaliculatus_F_contig130:61538..619781696845654.475663-CDS-H-canaliculatus_F_contig130:61538..61978Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig130 61539..61978 +
1622929031.4997492-CDS-H-canaliculatus_F_contig130:62131..621561622929031.4997492-CDS-H-canaliculatus_F_contig130:62131..62156Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig130 62132..62156 +
1696845654.488145-CDS-H-canaliculatus_F_contig130:62131..621561696845654.488145-CDS-H-canaliculatus_F_contig130:62131..62156Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig130 62132..62156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig130.2495.1

>prot_H-canaliculatus_F_contig130.2495.1 ID=prot_H-canaliculatus_F_contig130.2495.1|Name=mRNA_H-canaliculatus_F_contig130.2495.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=155bp
MPLGPPVFDQGHCWNSRFGSEFQHRFVATSFAFCMRASLLYEGLVFVSSN
VMQECCERTYNDTTSSPLLFLAKRTEESRPLHRASARGDLTERFRCSFTS
STGTSTRTEAFAGGTSCDITGRRKKSASCHRMLLVRPPEETWRFHQRCLM
QRWS*
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mRNA from alignment at H-canaliculatus_F_contig130:61392..62568+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig130.2495.1 ID=mRNA_H-canaliculatus_F_contig130.2495.1|Name=mRNA_H-canaliculatus_F_contig130.2495.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1177bp|location=Sequence derived from alignment at H-canaliculatus_F_contig130:61392..62568+ (Hapterophycus canaliculatus Oshoro5f female)
CCGAGGGCACCGGCGGCAACGAAGCTGTGCACAGGTATGGGGTACCGGTG
TTCGTACCGATGCACTTATGCGAAGCAGCAGCACCCCTTTATTTGTCATG
TACTTTTGCTGGAATTGTTTTCGAAGTGATGAAGTTATCGCCCGTGAATG
CCGTTGGGTCCTCCCGTTTTCGACCAGGGCCATTGCTGGAACTCACGTTT
TGGCTCAGAGTTTCAACACCGTTTTGTGGCAACCTCCTTCGCTTTTTGTA
TGAGGGCTTCGCTTTTGTACGAGGGCTTAGTCTTCGTTTCCTCGAACGTG
ATGCAAGAATGCTGTGAGCGCACTTATAATGACACCACCTCGTCTCCCCT
TCTTTTCTTAGCAAAGCGAACGGAAGAATCACGCCCATTGCATCGCGCAT
CGGCGAGGGGCGATCTCACCGAGAGATTTCGCTGTTCGTTCACGAGTTCA
ACCGGAACGTCGACGAGAACCGAGGCATTTGCGGGCGGGACTTCCTGCGA
CATTACTGGGAGGAGGAAAAAATCCGCAAGTTGTCATCGAATGTTGCTGG
TCCGTCCCCCGGAGGAAACCTGGCGATTCCACCAGAGGTGATCGAACCTA
CGATTTGGAATACCACATTTTTTCGCACACATTTAACCTCGATATGTGAA
CGTGCAACCTGGGCGACTTTGTACTCCTGTTTATGTACTACTCGTTTCCT
CGCCCGCTATTATTGTTGTTTGCTTCTCGGACGACGGTAGGTGCCTGATG
CAGCGATGGAGTTAATGGGGTTTGAGTATCTCGCCGTCGATCAAGATAAG
GTCGCGATGGACATCGCGAAAGAGCACAAGATTGAATGGGCGGGGATATC
TTCCAGTTCGCTCCCAACGGCACCTGAGACAGGTAGGTTGTTGTCAAACG
TTCTCGAGCAGCTTCCGGTTTTCAGCTGGAGGGTGATTTCCAACAAGCCG
GAGGGTGGTTTCCAACAAGCCGGAAAGCTGAATTTCTGCAGGACGTCGCT
TGCAAGCACTTTCTGTTTTTTACTCATTTTTTGTACTGTTTGTTGTTGTT
TTTATCGCCCGTACGTTTTTCAGGTGGGGGCTTGTCCGAAGAAACGGAGG
TGCCATCGGCAGCAGCGCGCGAGTTGGCGGGGGAACCCTCGTTCGGGCGG
CATGGAGGGAGGGGCCGTGAAGGCTTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig130:61392..62568+

>mRNA_H-canaliculatus_F_contig130.2495.1 ID=mRNA_H-canaliculatus_F_contig130.2495.1|Name=mRNA_H-canaliculatus_F_contig130.2495.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=930bp|location=Sequence derived from alignment at H-canaliculatus_F_contig130:61392..62568+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGTTGGGTCCTCCCGTTTTCGACCAGGGCCATTGCTGGAACTCACG
TTTTGGCTCAGAGTTTCAACACCGTTTTGTGGCAACCTCCTTCGCTTTTT
GTATGAGGGCTTCGCTTTTGTACGAGGGCTTAGTCTTCGTTTCCTCGAAC
GTGATGCAAGAATGCTGTGAGCGCACTTATAATGACACCACCTCGTCTCC
CCTTCTTTTCTTAGCAAAGCGAACGGAAGAATCACGCCCATTGCATCGCG
CATCGGCGAGGGGCGATCTCACCGAGAGATTTCGCTGTTCGTTCACGAGT
TCAACCGGAACGTCGACGAGAACCGAGGCATTTGCGGGCGGGACTTCCTG
CGACATTACTGGGAGGAGGAAAAAATCCGCAAGTTGTCATCGAATGTTGC
TGGTCCGTCCCCCGGAGGAAACCTGGCGATTCCACCAGAGATGCCGTTGG
GTCCTCCCGTTTTCGACCAGGGCCATTGCTGGAACTCACGTTTTGGCTCA
GAGTTTCAACACCGTTTTGTGGCAACCTCCTTCGCTTTTTGTATGAGGGC
TTCGCTTTTGTACGAGGGCTTAGTCTTCGTTTCCTCGAACGTGATGCAAG
AATGCTGTGAGCGCACTTATAATGACACCACCTCGTCTCCCCTTCTTTTC
TTAGCAAAGCGAACGGAAGAATCACGCCCATTGCATCGCGCATCGGCGAG
GGGCGATCTCACCGAGAGATTTCGCTGTTCGTTCACGAGTTCAACCGGAA
CGTCGACGAGAACCGAGGCATTTGCGGGCGGGACTTCCTGCGACATTACT
GGGAGGAGGAAAAAATCCGCAAGTTGTCATCGAATGTTGCTGGTCCGTCC
CCCGGAGGAAACCTGGCGATTCCACCAGAGGTGCCTGATGCAGCGATGGA
GTTAAGTGCCTGATGCAGCGATGGAGTTAA
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