mRNA_H-canaliculatus_F_contig13.2477.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13.2477.1
Unique NamemRNA_H-canaliculatus_F_contig13.2477.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13.2477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13contigH-canaliculatus_F_contig13:127..851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size676
Cds size492
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13.2477.1prot_H-canaliculatus_F_contig13.2477.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13 127..667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929029.2693622-CDS-H-canaliculatus_F_contig13:126..3831622929029.2693622-CDS-H-canaliculatus_F_contig13:126..383Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13 127..383 +
1696845653.398074-CDS-H-canaliculatus_F_contig13:126..3831696845653.398074-CDS-H-canaliculatus_F_contig13:126..383Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13 127..383 +
1622929029.2845337-CDS-H-canaliculatus_F_contig13:432..6671622929029.2845337-CDS-H-canaliculatus_F_contig13:432..667Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13 433..667 +
1696845653.406927-CDS-H-canaliculatus_F_contig13:432..6671696845653.406927-CDS-H-canaliculatus_F_contig13:432..667Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13 433..667 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929029.3000019-UTR-H-canaliculatus_F_contig13:667..8511622929029.3000019-UTR-H-canaliculatus_F_contig13:667..851Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13 668..851 +
1696845653.416015-UTR-H-canaliculatus_F_contig13:667..8511696845653.416015-UTR-H-canaliculatus_F_contig13:667..851Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13 668..851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13.2477.1

>prot_H-canaliculatus_F_contig13.2477.1 ID=prot_H-canaliculatus_F_contig13.2477.1|Name=mRNA_H-canaliculatus_F_contig13.2477.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=164bp
RVQRCADREGRHVSSERRAGRRAGGRARCVLRTRLGDATLLSCSLLTRTL
SRIRPARTAREIAAASFLLTESPPARPHVKDGSHRQTARSLDRANLPRRQ
VRHQNRLPTPTPCHSCRLPGTIRILQNTKTPRHRYRQDTVPRPRCQELGL
RFPFFERKRIQVF*
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mRNA from alignment at H-canaliculatus_F_contig13:127..851+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13.2477.1 ID=mRNA_H-canaliculatus_F_contig13.2477.1|Name=mRNA_H-canaliculatus_F_contig13.2477.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=725bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13:127..851+ (Hapterophycus canaliculatus Oshoro5f female)
CGAGTTCAGCGGTGCGCGGACAGAGAGGGACGACACGTGTCAAGCGAGAG
GAGGGCCGGCAGGCGGGCCGGCGGGCGGGCGAGGTGTGTCTTGAGGACGA
GATTGGGCGATGCAACACTACTTTCCTGCTCTCTGCTCACTCGCACGCTC
TCGCGAATACGACCCGCGCGCACAGCGCGAGAGATAGCTGCCGCCTCGTT
CTTGCTGACGGAATCCCCCCCCGCCCGGCCACACGTGAAAGATGGGTCGC
ATCGTCAACCGATCCTAGCAAAAAAACAAATGCTGCCACCGCGATTCCTC
CGGACGGACAGCGAGGTCTCTCGACAGAGCGAATCTTCCGCGACGGCAGG
TTCGGCACCAGAATCGTCTCCCGACCCCGACGCCTTGCCACTCGTGCCGT
CTACCCGGAACCATCCGGATACTACAGAACACCAAGACGCCAAGACATCG
TTACCGACAAGATACAGTCCCTCGCCCGCGTTGCCAGGAACTGGGTCTTC
GTTTTCCGTTTTTTGAAAGGAAGCGAATACAGGTATTTTGAAGGGTGATG
CGGTTCTGCCCGATCTGTCTTGAGCGAGACTCTCACCGCTGTCAACGACT
CCAGCAGCTCTGCTGTACAACACGCCGCTGATTTCGGGGGTTGGAGCGGA
GTTCTTGGGGGTGGAAAAGGCTCTCTTCGATGCGACAAAATCTTCTTCAC
AGACGAGACGACTTGTGCTCGACTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13:127..851+

>mRNA_H-canaliculatus_F_contig13.2477.1 ID=mRNA_H-canaliculatus_F_contig13.2477.1|Name=mRNA_H-canaliculatus_F_contig13.2477.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13:127..851+ (Hapterophycus canaliculatus Oshoro5f female)
CGAGTTCAGCGGTGCGCGGACAGAGAGGGACGACACGTGTCAAGCGAGAG
GAGGGCCGGCAGGCGGGCCGGCGGGCGGGCGAGGTGTGTCTTGAGGACGA
GATTGGGCGATGCAACACTACTTTCCTGCTCTCTGCTCACTCGCACGCTC
TCGCGAATACGACCCGCGCGCACAGCGCGAGAGATAGCTGCCGCCTCGTT
CTTGCTGACGGAATCCCCCCCCGCCCGGCCACACGTGAAAGATGGGTCGC
ATCGTCACGAGTTCAGCGGTGCGCGGACAGAGAGGGACGACACGTGTCAA
GCGAGAGGAGGGCCGGCAGGCGGGCCGGCGGGCGGGCGAGGTGTGTCTTG
AGGACGAGATTGGGCGATGCAACACTACTTTCCTGCTCTCTGCTCACTCG
CACGCTCTCGCGAATACGACCCGCGCGCACAGCGCGAGAGATAGCTGCCG
CCTCGTTCTTGCTGACGGAATCCCCCCCCGCCCGGCCACACGTGAAAGAT
GGGTCGCATCGTCAGACAGCGAGGTCTCTCGACAGAGCGAATCTTCCGCG
ACGGCAGGTTCGGCACCAGAATCGTCTCCCGACCCCGACGCCTTGCCACT
CGTGCCGTCTACCCGGAACCATCCGGATACTACAGAACACCAAGACGCCA
AGACATCGTTACCGACAAGATACAGTCCCTCGCCCGCGTTGCCAGGAACT
GGGTCTTCGTTTTCCGTTTTTTGAAAGGAAGCGAATACAGGTATTTTGAG
ACAGCGAGGTCTCTCGACAGAGCGAATCTTCCGCGACGGCAGGTTCGGCA
CCAGAATCGTCTCCCGACCCCGACGCCTTGCCACTCGTGCCGTCTACCCG
GAACCATCCGGATACTACAGAACACCAAGACGCCAAGACATCGTTACCGA
CAAGATACAGTCCCTCGCCCGCGTTGCCAGGAACTGGGTCTTCGTTTTCC
GTTTTTTGAAAGGAAGCGAATACAGGTATTTTGA
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