mRNA_H-canaliculatus_F_contig12990.2475.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12990.2475.1
Unique NamemRNA_H-canaliculatus_F_contig12990.2475.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12990.2475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12990contigH-canaliculatus_F_contig12990:1944..3068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929028.68691-CDS-H-canaliculatus_F_contig12990:1943..22581622929028.68691-CDS-H-canaliculatus_F_contig12990:1943..2258Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12990 1944..2258 +
1696845653.3342843-CDS-H-canaliculatus_F_contig12990:1943..22581696845653.3342843-CDS-H-canaliculatus_F_contig12990:1943..2258Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12990 1944..2258 +
1622929028.6967776-CDS-H-canaliculatus_F_contig12990:2996..30681622929028.6967776-CDS-H-canaliculatus_F_contig12990:2996..3068Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12990 2997..3068 +
1696845653.3449328-CDS-H-canaliculatus_F_contig12990:2996..30681696845653.3449328-CDS-H-canaliculatus_F_contig12990:2996..3068Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12990 2997..3068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12990.2475.1prot_H-canaliculatus_F_contig12990.2475.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12990 1944..3068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12990.2475.1

>prot_H-canaliculatus_F_contig12990.2475.1 ID=prot_H-canaliculatus_F_contig12990.2475.1|Name=mRNA_H-canaliculatus_F_contig12990.2475.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=129bp
MERASKGALARSFRAKDLVERHEDALLAAAGREQDLKSTVGKLRVRIVAL
EAEVKGKRKNAANGGNELGSGAEARRNGIDHSILIGKSVTGCRALCGLSS
HEAVMKLYAFLNAEDAAENMVFYDQRARG
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mRNA from alignment at H-canaliculatus_F_contig12990:1944..3068+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12990.2475.1 ID=mRNA_H-canaliculatus_F_contig12990.2475.1|Name=mRNA_H-canaliculatus_F_contig12990.2475.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1125bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12990:1944..3068+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGCGTGCTTCGAAGGGAGCCCTGGCCCGGAGTTTTCGAGCCAAAGA
CCTGGTCGAACGACACGAGGATGCGCTGCTGGCTGCAGCGGGCCGTGAAC
AGGATCTAAAGTCGACGGTCGGGAAGCTGAGGGTGAGGATTGTAGCCCTC
GAGGCGGAGGTAAAGGGGAAGAGAAAGAATGCGGCGAACGGAGGCAATGA
ATTGGGGTCCGGAGCAGAAGCGAGGAGGAATGGAATCGACCACAGCATCT
TGATCGGCAAGAGCGTCACGGGATGTCGCGCGCTTTGCGGGTTGAGCAGT
CACGAGGCCGTTATGGTGAGTTTCAATCCAGATTTCAAAATCAAGAGTGG
TGTTTGCGCTGCACTCCTTGTTGCGAGGGTTCCGTTCGGCGAGAAGTTAT
GTCGAATTGTGAGACAGAGACGTTCCATGCGTGCAAGTAGAGGCGAATGA
CGACCTAGAAGTAGTAAGGCGCCTATTCAAATTTCCTGTCATGAGGCGCT
ACGGTACGTGAGCGTTTCTTAGCCCTGTATTTTTGGAGACACACGGCTCG
TTTCCCGCATCGGGAACAGGTTGTTTAGGTTTGGGACCACGTGGTGACTA
TGATCGTGGGCTACCAACGTGGCACCTCCCGCCTCTTGTTATTTTGTACG
GTGTTGCGTGTGTTTGGGTGTTGGGCTACTCCGTCGATGTTGTTGAAAGC
CCTTCTCGTCGTTTGTTCCGTTCGGCTGTTCAGCTGTGCGAGGTGGCACA
CGTGTGGGCGTGAAGGGTGAGAACACGAAGGCAAAAGTGCATGCAACTTG
TAGGGTTGTATGATCGGGTGTTGTAGTTGTTTTGCGTGGGTATGTTGGAG
GGTCACTGTGCTTCGGTTTGGCGGACGGGGAGTGTTTAAGGGCAAACGCG
ACTAAATGTCCCTTCGTAATCTGCGAACGTAAAGCGATATCGCGTGTGGG
CTTAGTCGGCTCGTTGTCGCCGAAATGTGACGCTCGCCAGATGTCTAACG
CTCTGTCTTGATCCGTGTTTGTAAACACCCCACGTCGCGTCATACCTCGA
CAGAAGCTGTACGCGTTCCTGAACGCAGAGGACGCTGCGGAGAACATGGT
CTTCTACGACCAGCGAGCAAGAGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12990:1944..3068+

>mRNA_H-canaliculatus_F_contig12990.2475.1 ID=mRNA_H-canaliculatus_F_contig12990.2475.1|Name=mRNA_H-canaliculatus_F_contig12990.2475.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=774bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12990:1944..3068+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGCGTGCTTCGAAGGGAGCCCTGGCCCGGAGTTTTCGAGCCAAAGA
CCTGGTCGAACGACACGAGGATGCGCTGCTGGCTGCAGCGGGCCGTGAAC
AGGATCTAAAGTCGACGGTCGGGAAGCTGAGGGTGAGGATTGTAGCCCTC
GAGGCGGAGGTAAAGGGGAAGAGAAAGAATGCGGCGAACGGAGGCAATGA
ATTGGGGTCCGGAGCAGAAGCGAGGAGGAATGGAATCGACCACAGCATCT
TGATCGGCAAGAGCGTCACGGGATGTCGCGCGCTTTGCGGGTTGAGCAGT
CACGAGGCCGTTATGATGGAGCGTGCTTCGAAGGGAGCCCTGGCCCGGAG
TTTTCGAGCCAAAGACCTGGTCGAACGACACGAGGATGCGCTGCTGGCTG
CAGCGGGCCGTGAACAGGATCTAAAGTCGACGGTCGGGAAGCTGAGGGTG
AGGATTGTAGCCCTCGAGGCGGAGGTAAAGGGGAAGAGAAAGAATGCGGC
GAACGGAGGCAATGAATTGGGGTCCGGAGCAGAAGCGAGGAGGAATGGAA
TCGACCACAGCATCTTGATCGGCAAGAGCGTCACGGGATGTCGCGCGCTT
TGCGGGTTGAGCAGTCACGAGGCCGTTATGAAGCTGTACGCGTTCCTGAA
CGCAGAGGACGCTGCGGAGAACATGGTCTTCTACGACCAGCGAGCAAGAG
GCAAGCTGTACGCGTTCCTGAACGCAGAGGACGCTGCGGAGAACATGGTC
TTCTACGACCAGCGAGCAAGAGGC
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