prot_H-canaliculatus_F_contig1299.2474.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1299.2474.1
Unique Nameprot_H-canaliculatus_F_contig1299.2474.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length185
Homology
BLAST of mRNA_H-canaliculatus_F_contig1299.2474.1 vs. uniprot
Match: A0A6H5LIG4_9PHAE (HRDC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIG4_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.780e-33
Identity = 79/184 (42.93%), Postives = 106/184 (57.61%), Query Frame = 0
Query:    2 RMKKPHQEALSDALSEWRNKRAEMFGTPYFNILPAPELMDIIHKVPTTVEELCTIGRWRADKKRANHGDSLLALITGFLEENCITLGGEFPWGD-EMQPLVFSQEPETSNGNHGHDEGGYSDEXXXXXXGQGPHGGYDQANDEDVFGAPTAAPTSSRYFPSSPQHGGSQGGGDEIGDDILDLQL 184
            RM   H+    DAL +WR++RAE F   YF I P  EL+++IHKVP T EELC IG WR ++K A HG+SLL+LI G++++N ITL G+FPWGD E++P  F+Q    S G    D+G  +D+      G G               A     TSS++FP    H G   G D  GD+I++LQL
Sbjct:   89 RMSDEHRARFKDALIKWRDERAEQFSLRYFYIFPETELLEVIHKVPITSEELCDIGSWRGNQKLATHGESLLSLIKGYIDDNNITLQGQFPWGDQEIKPPEFTQGGGMS-GISDRDDGD-NDDGLPCSFGAGTDXXXXXXXXXXXXDAGYGTTTSSKFFPQP--HSGDNIGDD--GDEIMELQL 266          
BLAST of mRNA_H-canaliculatus_F_contig1299.2474.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.150e-27
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = 0
Query:    2 RMKKPHQEALSDALSEWRNKRAEMFGTPYFNILPAPELMDIIHKVPTTVEELCTIGRWRADKKRANHGDSLLALITGFLEENCITLGGEFPWGDE 96
            RM   H+    DAL +WR++RAE F   YF I P  EL+++IHKVP T EELC IG WR ++K A HG+SLL+LI G++++N ITL G+FPWGD+
Sbjct: 1295 RMSDEHRARFKDALIKWRDERAEQFSLRYFYIFPETELLEVIHKVPVTSEELCDIGSWRGNQKLATHGESLLSLIKGYIDDNNITLQGQFPWGDQ 1389          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1299.2474.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LIG4_9PHAE1.780e-3342.93HRDC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FR28_ECTSI2.150e-2754.74DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.150.80coord: 1..84
e-value: 9.2E-12
score: 46.5
IPR002121HRDC domainPFAMPF00570HRDCcoord: 8..76
e-value: 7.0E-9
score: 35.6
IPR002121HRDC domainPROSITEPS50967HRDCcoord: 5..86
score: 14.249
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 4..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1299contigH-canaliculatus_F_contig1299:22768..26010 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1299.2474.1mRNA_H-canaliculatus_F_contig1299.2474.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1299 20487..27664 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1299.2474.1 ID=prot_H-canaliculatus_F_contig1299.2474.1|Name=mRNA_H-canaliculatus_F_contig1299.2474.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=185bp
MRMKKPHQEALSDALSEWRNKRAEMFGTPYFNILPAPELMDIIHKVPTTV
EELCTIGRWRADKKRANHGDSLLALITGFLEENCITLGGEFPWGDEMQPL
VFSQEPETSNGNHGHDEGGYSDEEEEEEEGQGPHGGYDQANDEDVFGAPT
AAPTSSRYFPSSPQHGGSQGGGDEIGDDILDLQL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010997HRDC-like_sf
IPR002121HRDC_dom