mRNA_H-canaliculatus_F_contig12983.2471.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12983.2471.1
Unique NamemRNA_H-canaliculatus_F_contig12983.2471.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12983.2471.1 vs. uniprot
Match: D7G3F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F6_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.720e-7
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = -3 
Query:  409 THESYSSSTFNTLGVEGIGVTTVMLQSVELLPEEWISLIEVSI 537
            THESY+ STFN LGV   G+++VML+SV+LL  EWISLIEV I
Sbjct:  179 THESYAGSTFNPLGVSATGISSVMLESVDLLENEWISLIEVLI 221
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BLAST of mRNA_H-canaliculatus_F_contig12983.2471.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.680e-7
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = -3 
Query:  409 THESYSSSTFNTLGVEGIGVTTVMLQSVELLPEEWISLIEVSI 537
            THESY+ +TFNTLGV    V+TVML+SV LL +EWISLIEV I
Sbjct:  191 THESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEVLI 233
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BLAST of mRNA_H-canaliculatus_F_contig12983.2471.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.190e-7
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = -3 
Query:  415 THESYSSSTFNTLGVEGIGVTTVMLQSVELLPEEWISLIEV 537
            THESY+ STFN+LGV   G+ TVML+SV+LL  EWISLIEV
Sbjct:  585 THESYAGSTFNSLGVSATGIGTVMLESVDLLENEWISLIEV 625
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BLAST of mRNA_H-canaliculatus_F_contig12983.2471.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 5.520e-7
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = -3 
Query:  409 THESYSSSTFNTLGVEGIGVTTVMLQSVELLPEEWISLIEVSI 537
            THESY+ +TFNTLGV    V+TVML+SV LL +EWISLIEV I
Sbjct:  442 THESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEVLI 484
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12983.2471.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 5.600e-7
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = -3 
Query:  409 THESYSSSTFNTLGVEGIGVTTVMLQSVELLPEEWISLIEVSI 537
            THESY+ +TFNTLGV    V+TVML+SV LL +EWISLIEV I
Sbjct:  469 THESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEVLI 511
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BLAST of mRNA_H-canaliculatus_F_contig12983.2471.1 vs. uniprot
Match: D7FI81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI81_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 5.770e-7
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = -3 
Query:  409 THESYSSSTFNTLGVEGIGVTTVMLQSVELLPEEWISLIEVSI 537
            THESY+ STFNTLGV     +TVML+SV+LL +EWISL+EV I
Sbjct:  263 THESYADSTFNTLGVTATEASTVMLESVDLLSDEWISLLEVLI 305
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BLAST of mRNA_H-canaliculatus_F_contig12983.2471.1 vs. uniprot
Match: D7FI77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI77_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.630e-6
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = -3 
Query:  409 THESYSSSTFNTLGVEGIGVTTVMLQSVELLPEEWISLIEVSI 537
            THESY+ STFNTLGV     +TVML+S  LL +EWISLIEV I
Sbjct:  127 THESYTDSTFNTLGVTANEASTVMLESTALLSDEWISLIEVLI 169
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12983.2471.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.940e-6
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = -3 
Query:  412 THESYSSSTFNTLGVEGIGVTTVMLQSVELLPEEWISLIEVS 537
            THESY+ +TFN LGV    V+TVML+SV LL +EWISLIEVS
Sbjct:  418 THESYADATFNMLGVTATDVSTVMLESVALLSDEWISLIEVS 459
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12983.2471.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.970e-6
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = -3 
Query:  409 THESYSSSTFNTLGVEGIGVTTVMLQSVELLPEEWISLIEVSI 537
            THESY+ STFNTLGV     +TVML+SV LL +EWISL+EV I
Sbjct:  565 THESYADSTFNTLGVTATEASTVMLESVALLSDEWISLLEVLI 607
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12983.2471.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.100e-6
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = -3 
Query:  412 THESYSSSTFNTLGVEGIGVTTVMLQSVELLPEEWISLIEVS 537
            THESY+ +TFN LGV    V+TVML+SV LL +EWISLIEVS
Sbjct:  797 THESYTDATFNMLGVTATDVSTVMLESVALLSDEWISLIEVS 838
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12983.2471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7G3F6_ECTSI1.720e-767.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5F4_ECTSI2.680e-769.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE3.190e-770.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4F9_ECTSI5.520e-769.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3F4_ECTSI5.600e-769.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI81_ECTSI5.770e-767.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI77_ECTSI1.630e-667.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB04_9PHAE1.940e-669.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI87_ECTSI1.970e-667.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR2_9PHAE2.100e-669.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12983contigH-canaliculatus_F_contig12983:2634..3172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size541
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.8679395-CDS-H-canaliculatus_F_contig12983:2633..30921622929027.8679395-CDS-H-canaliculatus_F_contig12983:2633..3092Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12983 2634..3092 +
1696845652.9965017-CDS-H-canaliculatus_F_contig12983:2633..30921696845652.9965017-CDS-H-canaliculatus_F_contig12983:2633..3092Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12983 2634..3092 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.8792531-UTR-H-canaliculatus_F_contig12983:3092..31721622929027.8792531-UTR-H-canaliculatus_F_contig12983:3092..3172Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12983 3093..3172 +
1696845653.0079038-UTR-H-canaliculatus_F_contig12983:3092..31721696845653.0079038-UTR-H-canaliculatus_F_contig12983:3092..3172Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12983 3093..3172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12983.2471.1prot_H-canaliculatus_F_contig12983.2471.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12983 2634..3092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12983.2471.1

>prot_H-canaliculatus_F_contig12983.2471.1 ID=prot_H-canaliculatus_F_contig12983.2471.1|Name=mRNA_H-canaliculatus_F_contig12983.2471.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=153bp
YFYHPCLKVNSSRSYDPGPGAQTCYSDNHGSDSATRKVYVQPCEGRIVAS
RCVLRKALVRKTFENIHGKSYDGAASCAACLLLPVRCVPGRESTRIQFGC
SSVRHRCKRVLLLHHTRPHLGIGMRCTLWFEKGICCDTDLDEADPLFRQQ
LD*
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mRNA from alignment at H-canaliculatus_F_contig12983:2634..3172+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12983.2471.1 ID=mRNA_H-canaliculatus_F_contig12983.2471.1|Name=mRNA_H-canaliculatus_F_contig12983.2471.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=539bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12983:2634..3172+ (Hapterophycus canaliculatus Oshoro5f female)
TATTTTTATCACCCTTGCCTAAAGGTGAACAGTTCGAGGAGCTACGATCC
TGGACCCGGCGCGCAGACCTGCTACAGCGACAACCACGGCTCGGATTCCG
CAACACGGAAAGTTTATGTACAACCATGCGAAGGGAGGATAGTTGCGAGC
AGATGCGTTCTGAGGAAAGCCTTGGTGAGAAAGACATTTGAGAATATACA
TGGTAAAAGCTACGACGGGGCAGCTTCGTGCGCGGCGTGCCTCTTGCTTC
CTGTGAGATGCGTGCCTGGCCGAGAATCTACTCGCATTCAATTTGGGTGT
AGTTCCGTGCGACACCGCTGCAAGCGCGTGCTCCTTTTGCACCATACGCG
CCCACACTTGGGCATCGGGATGAGATGTACGCTTTGGTTCGAGAAAGGCA
TCTGTTGTGATACTGACCTCGATGAGGCTGATCCACTCTTCCGGCAGCAG
CTCGACTGACTGCAGCATCACTGTGGTGACACCTATGCCTTCCACGCCGA
GCGTGTTGAAGGTGGAGCTGGAGTAGGACTCGTGCGTGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12983:2634..3172+

>mRNA_H-canaliculatus_F_contig12983.2471.1 ID=mRNA_H-canaliculatus_F_contig12983.2471.1|Name=mRNA_H-canaliculatus_F_contig12983.2471.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=918bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12983:2634..3172+ (Hapterophycus canaliculatus Oshoro5f female)
TATTTTTATCACCCTTGCCTAAAGGTGAACAGTTCGAGGAGCTACGATCC
TGGACCCGGCGCGCAGACCTGCTACAGCGACAACCACGGCTCGGATTCCG
CAACACGGAAAGTTTATGTACAACCATGCGAAGGGAGGATAGTTGCGAGC
AGATGCGTTCTGAGGAAAGCCTTGGTGAGAAAGACATTTGAGAATATACA
TGGTAAAAGCTACGACGGGGCAGCTTCGTGCGCGGCGTGCCTCTTGCTTC
CTGTGAGATGCGTGCCTGGCCGAGAATCTACTCGCATTCAATTTGGGTGT
AGTTCCGTGCGACACCGCTGCAAGCGCGTGCTCCTTTTGCACCATACGCG
CCCACACTTGGGCATCGGGATGAGATGTACGCTTTGGTTCGAGAAAGGCA
TCTGTTGTGATACTGACCTCGATGAGGCTGATCCACTCTTCCGGCAGCAG
CTCGACTGATATTTTTATCACCCTTGCCTAAAGGTGAACAGTTCGAGGAG
CTACGATCCTGGACCCGGCGCGCAGACCTGCTACAGCGACAACCACGGCT
CGGATTCCGCAACACGGAAAGTTTATGTACAACCATGCGAAGGGAGGATA
GTTGCGAGCAGATGCGTTCTGAGGAAAGCCTTGGTGAGAAAGACATTTGA
GAATATACATGGTAAAAGCTACGACGGGGCAGCTTCGTGCGCGGCGTGCC
TCTTGCTTCCTGTGAGATGCGTGCCTGGCCGAGAATCTACTCGCATTCAA
TTTGGGTGTAGTTCCGTGCGACACCGCTGCAAGCGCGTGCTCCTTTTGCA
CCATACGCGCCCACACTTGGGCATCGGGATGAGATGTACGCTTTGGTTCG
AGAAAGGCATCTGTTGTGATACTGACCTCGATGAGGCTGATCCACTCTTC
CGGCAGCAGCTCGACTGA
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