mRNA_H-canaliculatus_F_contig1298.2469.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1298.2469.1
Unique NamemRNA_H-canaliculatus_F_contig1298.2469.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1298.2469.1 vs. uniprot
Match: A0A6H5KJL1_9PHAE (CCHC-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL1_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.130e-18
Identity = 52/149 (34.90%), Postives = 85/149 (57.05%), Query Frame = 1 
Query:   85 GFSRQQTPRVS--APIFKGKG--HSFTQFKAEFIQAAKALCLDEQFTGD-QPPIPVADRKKSRADLTREGHSPHAVELAFQAWSFLSSALPNAPEKTILLRCTSPKQAFEELEAAHNPTTEGARQTLLNEFQSFSIS--QSDDPIVRLH 510
            G+S     RV+  AP+  GK   H F  ++  F+QAAKA+ LD Q TGD +  IPV D     ++L R G++   V+   QA+ F+++A+    +K I+  CTS K+   ELE  ++P ++G++Q L+ +   F+I    + +PI  L+
Sbjct:  152 GYSSSHMKRVTVNAPLLDGKSRSHGFDSWRKSFVQAAKAIDLDGQLTGDAESSIPVGDPNLPTSELLRRGYTRAEVQRGLQAFHFITTAVVKEADKAIISNCTSAKEVLAELEKVYDPESQGSKQALMRKMFDFAIPTHSNSNPIEHLY 300
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BLAST of mRNA_H-canaliculatus_F_contig1298.2469.1 vs. uniprot
Match: A0A6H5J624_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J624_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.600e-17
Identity = 47/147 (31.97%), Postives = 78/147 (53.06%), Query Frame = 1 
Query:   70 FQNNGGFSRQQTPRVSAPIFKGKGHSFTQFKAEFIQAAKALCLDEQFTGDQPPIPVADRKKSRADLTREGHSPHAVELAFQAWSFLSSALPNAPEKTILLRCTSPKQAFEELEAAHNPTTEGARQTLLNEFQSFSISQSDDPIVRLH 510
            F   GG S+     V+ P  K     +  ++ + I  A  L + + F+G      + D  K +  L  +G S  A+   + AW+FLS+AL    +K IL RCT+P++A  +L+AA+ P T+GA+Q L  EFQ +   + ++P+  L+
Sbjct:    7 FTGGGGISKLAASHVNPPQLKKGAEQYPGWRQDMIVQAGILDIGDVFSGGGV---LPDINKPQTALLEQGFSYAAIRKTYLAWNFLSAALTTETDKAILRRCTNPREALRQLDAAYLPETQGAQQQLFREFQQYQTPRKENPVASLN 150
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BLAST of mRNA_H-canaliculatus_F_contig1298.2469.1 vs. uniprot
Match: A0A6H5K4W1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W1_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.340e-16
Identity = 45/142 (31.69%), Postives = 76/142 (53.52%), Query Frame = 1 
Query:   85 GFSRQQTPRVSAPIFKGKGHSFTQFKAEFIQAAKALCLDEQFTGDQPPIPVADRKKSRADLTREGHSPHAVELAFQAWSFLSSALPNAPEKTILLRCTSPKQAFEELEAAHNPTTEGARQTLLNEFQSFSISQSDDPIVRLH 510
            G S+     V+ P  K     +  ++ + I  A  L + + F+G      + D  K +  L  +G S  A+   + AW+FLS+AL    +K IL RCT+P++A  +L+AA+ P T+GA+Q L  EFQ +   + ++P+  L+
Sbjct:   83 GISKLAASHVNPPQLKKGAEQYPGWRQDMIVQAGILDIGDVFSGGGV---LPDINKPQTALLEQGFSYAAIRKTYLAWNFLSAALTTETDKAILRRCTNPREALRQLDAAYLPETQGAQQQLFREFQQYQTPRKENPVASLN 221
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BLAST of mRNA_H-canaliculatus_F_contig1298.2469.1 vs. uniprot
Match: A0A6H5KEL4_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.450e-16
Identity = 46/147 (31.29%), Postives = 77/147 (52.38%), Query Frame = 1 
Query:   70 FQNNGGFSRQQTPRVSAPIFKGKGHSFTQFKAEFIQAAKALCLDEQFTGDQPPIPVADRKKSRADLTREGHSPHAVELAFQAWSFLSSALPNAPEKTILLRCTSPKQAFEELEAAHNPTTEGARQTLLNEFQSFSISQSDDPIVRLH 510
            F   GG  +     V+ P  K     +  ++ + I  A  L + + F+G      + D  K +  L  +G S  A+   + AW+FLS+AL    +K IL RCT+P++A  +L+AA+ P T+GA+Q L  EFQ +   + ++P+  L+
Sbjct:  158 FTGGGGIPKLAASHVNPPQLKKGAEQYPGWRQDMIVQAGILDIGDVFSGGGV---LPDINKPQTALLEQGFSYAAIRKTYLAWNFLSAALTTETDKAILRRCTNPREALRQLDAAYLPETQGAQQQLFREFQQYQTPRKENPVASLN 301
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BLAST of mRNA_H-canaliculatus_F_contig1298.2469.1 vs. uniprot
Match: A0A6H5JAJ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ1_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.100e-10
Identity = 30/92 (32.61%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:  235 VADRKKSRADLTREGHSPHAVELAFQAWSFLSSALPNAPEKTILLRCTSPKQAFEELEAAHNPTTEGARQTLLNEFQSFSISQSDDPIVRLH 510
            + D  + +  L  +G S  A+   + AW+FLS+A  +  +K IL RCT+P++A  +L+AA+   T+GA+Q L  E + +   + ++P+  L+
Sbjct:   20 LPDINEPQTALLEQGFSYAAIRKTYLAWNFLSAASTSETDKAILRRCTNPREALRQLDAAYLQETQGAQQQLFRELRQYQTPRKENPVASLN 111
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1298.2469.1 vs. uniprot
Match: A0A6H5JQ40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ40_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.620e-9
Identity = 37/118 (31.36%), Postives = 60/118 (50.85%), Query Frame = 1 
Query:   85 GFSRQQTPRVSAPIFKGKGHSFTQFKAEFIQAAKALCLDEQFTGDQPPIPVADRKKSRADLTREGHSPHAVELAFQAWSFLSSALPNAPEKTILLRCTSPKQAFEELEAAHNPTTEGA 438
            G S+     V+ P  K     +  ++ + I  A  L + + F+G      + D  K +  L  +G S  A+   + AW+FLS+ L     K IL RCT+P++A  +L+AA+ P T+GA
Sbjct:  148 GISKLAASHVNPPQLKKGAEQYPGWRQDMIVQAGILDIGDVFSGGGV---LPDINKPQTALLEQGFSYAAIRKTYLAWNFLSATLTTETNKAILSRCTNPREALRQLDAAYLPETQGA 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1298.2469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KJL1_9PHAE2.130e-1834.90CCHC-type domain-containing protein n=3 Tax=Ectoca... [more]
A0A6H5J624_9PHAE1.600e-1731.97CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K4W1_9PHAE1.340e-1631.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEL4_9PHAE1.450e-1631.29CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JAJ1_9PHAE1.100e-1032.61Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQ40_9PHAE1.620e-931.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1298contigH-canaliculatus_F_contig1298:24155..24664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size512
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.7817686-CDS-H-canaliculatus_F_contig1298:24154..246641622929027.7817686-CDS-H-canaliculatus_F_contig1298:24154..24664Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1298 24155..24664 +
1696845652.9707649-CDS-H-canaliculatus_F_contig1298:24154..246641696845652.9707649-CDS-H-canaliculatus_F_contig1298:24154..24664Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1298 24155..24664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1298.2469.1prot_H-canaliculatus_F_contig1298.2469.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1298 24155..24664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1298.2469.1

>prot_H-canaliculatus_F_contig1298.2469.1 ID=prot_H-canaliculatus_F_contig1298.2469.1|Name=mRNA_H-canaliculatus_F_contig1298.2469.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=170bp
GFSAGGFGPESGGFGPGAIGPEFFQNNGGFSRQQTPRVSAPIFKGKGHSF
TQFKAEFIQAAKALCLDEQFTGDQPPIPVADRKKSRADLTREGHSPHAVE
LAFQAWSFLSSALPNAPEKTILLRCTSPKQAFEELEAAHNPTTEGARQTL
LNEFQSFSISQSDDPIVRLH
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mRNA from alignment at H-canaliculatus_F_contig1298:24155..24664+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1298.2469.1 ID=mRNA_H-canaliculatus_F_contig1298.2469.1|Name=mRNA_H-canaliculatus_F_contig1298.2469.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=510bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1298:24155..24664+ (Hapterophycus canaliculatus Oshoro5f female)
GGTTTTAGCGCAGGAGGATTTGGACCAGAATCAGGAGGTTTTGGCCCAGG
CGCTATCGGCCCAGAATTCTTCCAGAACAACGGAGGATTTTCGAGACAGC
AAACACCTCGTGTCTCCGCCCCCATTTTCAAGGGGAAGGGACACTCGTTC
ACTCAGTTCAAGGCCGAGTTCATACAGGCTGCGAAAGCCCTTTGTCTGGA
CGAGCAATTCACTGGAGACCAGCCTCCCATCCCGGTCGCGGACCGAAAGA
AATCGCGTGCTGATCTAACGCGCGAAGGGCACAGCCCCCATGCCGTCGAG
CTCGCTTTTCAGGCGTGGAGCTTTCTCTCCTCCGCGCTTCCAAATGCCCC
CGAAAAGACGATCCTGCTAAGATGTACCTCGCCGAAACAGGCATTCGAGG
AGCTGGAGGCAGCCCACAACCCAACAACAGAGGGGGCAAGGCAGACCCTT
CTCAACGAATTCCAATCATTCTCCATTTCACAAAGCGATGACCCCATCGT
TCGCCTCCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1298:24155..24664+

>mRNA_H-canaliculatus_F_contig1298.2469.1 ID=mRNA_H-canaliculatus_F_contig1298.2469.1|Name=mRNA_H-canaliculatus_F_contig1298.2469.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1020bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1298:24155..24664+ (Hapterophycus canaliculatus Oshoro5f female)
GGTTTTAGCGCAGGAGGATTTGGACCAGAATCAGGAGGTTTTGGCCCAGG
CGCTATCGGCCCAGAATTCTTCCAGAACAACGGAGGATTTTCGAGACAGC
AAACACCTCGTGTCTCCGCCCCCATTTTCAAGGGGAAGGGACACTCGTTC
ACTCAGTTCAAGGCCGAGTTCATACAGGCTGCGAAAGCCCTTTGTCTGGA
CGAGCAATTCACTGGAGACCAGCCTCCCATCCCGGTCGCGGACCGAAAGA
AATCGCGTGCTGATCTAACGCGCGAAGGGCACAGCCCCCATGCCGTCGAG
CTCGCTTTTCAGGCGTGGAGCTTTCTCTCCTCCGCGCTTCCAAATGCCCC
CGAAAAGACGATCCTGCTAAGATGTACCTCGCCGAAACAGGCATTCGAGG
AGCTGGAGGCAGCCCACAACCCAACAACAGAGGGGGCAAGGCAGACCCTT
CTCAACGAATTCCAATCATTCTCCATTTCACAAAGCGATGACCCCATCGT
TCGCCTCCACGGTTTTAGCGCAGGAGGATTTGGACCAGAATCAGGAGGTT
TTGGCCCAGGCGCTATCGGCCCAGAATTCTTCCAGAACAACGGAGGATTT
TCGAGACAGCAAACACCTCGTGTCTCCGCCCCCATTTTCAAGGGGAAGGG
ACACTCGTTCACTCAGTTCAAGGCCGAGTTCATACAGGCTGCGAAAGCCC
TTTGTCTGGACGAGCAATTCACTGGAGACCAGCCTCCCATCCCGGTCGCG
GACCGAAAGAAATCGCGTGCTGATCTAACGCGCGAAGGGCACAGCCCCCA
TGCCGTCGAGCTCGCTTTTCAGGCGTGGAGCTTTCTCTCCTCCGCGCTTC
CAAATGCCCCCGAAAAGACGATCCTGCTAAGATGTACCTCGCCGAAACAG
GCATTCGAGGAGCTGGAGGCAGCCCACAACCCAACAACAGAGGGGGCAAG
GCAGACCCTTCTCAACGAATTCCAATCATTCTCCATTTCACAAAGCGATG
ACCCCATCGTTCGCCTCCAC
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