mRNA_H-canaliculatus_F_contig1297.2466.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1297.2466.1
Unique NamemRNA_H-canaliculatus_F_contig1297.2466.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1297.2466.1 vs. uniprot
Match: D8LRM6_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRM6_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.780e-57
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFSTA 264
            MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGC+VTHEHTKFVYLYIGQ+GVCLFSTA
Sbjct:    1 MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA 88
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BLAST of mRNA_H-canaliculatus_F_contig1297.2466.1 vs. uniprot
Match: A0A836CI24_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI24_9STRA)

HSP 1 Score: 150 bits (380), Expect = 7.030e-46
Identity = 70/88 (79.55%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:    1 MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFSTA 264
            MSARPVIKTSTM  DMQEAAIQVAQDAI+DNNLEK+IA+A+K  FE +YPS+WHCFVGRNFG +VTHE +KF+Y YIGQ+GVCLFSTA
Sbjct:    1 MSARPVIKTSTMPADMQEAAIQVAQDAIKDNNLEKEIAHAIKTNFERIYPSVWHCFVGRNFGSFVTHEQSKFIYFYIGQMGVCLFSTA 88
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BLAST of mRNA_H-canaliculatus_F_contig1297.2466.1 vs. uniprot
Match: A0A7S2STQ1_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STQ1_9STRA)

HSP 1 Score: 121 bits (303), Expect = 8.870e-34
Identity = 55/88 (62.50%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFSTA 264
            M+ARPVIK S+M PDMQE AIQ AQDAI   N E++IA A++   E ++P+ WH  VGRNFGC+VTHE +KF+Y YIGQ+GVC+F+TA
Sbjct:   29 MAARPVIKHSSMTPDMQEMAIQCAQDAIAAKNTEQEIAMAIRQNIETMFPATWHVLVGRNFGCFVTHEASKFIYFYIGQVGVCMFATA 116
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BLAST of mRNA_H-canaliculatus_F_contig1297.2466.1 vs. uniprot
Match: A0A7S1UG18_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG18_9STRA)

HSP 1 Score: 120 bits (300), Expect = 3.120e-33
Identity = 51/82 (62.20%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:   16 VIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFST 261
            V+K S M  +MQ+AA+Q+AQDAIR++  E++IA+A+K  FE +Y + WHCFVGRNFGCYVTH+   FVY YIGQLG+CLF+T
Sbjct:   41 VVKASRMEQEMQDAAVQIAQDAIREHMTEQEIASAIKQQFESIYHTTWHCFVGRNFGCYVTHQENAFVYFYIGQLGICLFAT 122
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BLAST of mRNA_H-canaliculatus_F_contig1297.2466.1 vs. uniprot
Match: A0A7S1C452_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C452_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.950e-28
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:   16 VIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFST 261
            ++K + M   M E AI VA  AI+  N EK+ A+A+KA  E L+P +WHCFVGR FGCYVTHE +KF+Y Y+GQLGVCLFS+
Sbjct:   95 IVKLNQMETVMAERAIDVALRAIKSCNTEKETASAIKAQMEALFPGVWHCFVGRKFGCYVTHESSKFIYFYVGQLGVCLFSS 176
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BLAST of mRNA_H-canaliculatus_F_contig1297.2466.1 vs. uniprot
Match: A0A0R3WWJ5_HYDTA (Dynein light chain n=2 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WWJ5_HYDTA)

HSP 1 Score: 96.7 bits (239), Expect = 4.050e-24
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:   16 VIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFST 261
            V+K + MA DMQ+ A+  AQDA+   N+EKDIA  +K  F+ LY   WHC VGRNFG YVTHE   F+Y Y+GQ+ + LF +
Sbjct:   28 VVKNADMAEDMQQRAVDCAQDAMNKYNVEKDIAAHIKKEFDRLYSPTWHCIVGRNFGSYVTHETKHFIYFYMGQVAILLFKS 109
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BLAST of mRNA_H-canaliculatus_F_contig1297.2466.1 vs. uniprot
Match: K3WKC4_GLOUD (Dynein light chain n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKC4_GLOUD)

HSP 1 Score: 95.9 bits (237), Expect = 4.650e-24
Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:   10 RPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPS-LWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFSTA 264
            +PV+KTSTM PD+Q+  I VAQ A+     E+ IA  VK  FE  Y   LWHC VGRN  CYVTHE +KF+Y YIGQ+ V LF+TA
Sbjct:    5 KPVVKTSTMDPDLQDEVILVAQHAMDTEIDEQQIAAKVKQHFEQKYHGMLWHCCVGRNVACYVTHEQSKFLYFYIGQMAVVLFATA 90
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BLAST of mRNA_H-canaliculatus_F_contig1297.2466.1 vs. uniprot
Match: U4LB13_PYROM (Dynein light chain n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4LB13_PYROM)

HSP 1 Score: 94.7 bits (234), Expect = 2.020e-23
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:   19 IKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFSTA 264
            +K+  MA DM  AA +VA+ A+++NN+EKDIA  +K  F+  Y + WHC VGRNFG +VTHE   F+Y Y+G L V L+ TA
Sbjct:   24 VKSVDMAEDMAAAAQEVAKKAMKENNVEKDIAQMIKKEFDAKYGNTWHCIVGRNFGSFVTHETKHFIYFYVGNLAVLLYKTA 105
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BLAST of mRNA_H-canaliculatus_F_contig1297.2466.1 vs. uniprot
Match: A0A0R3WU97_HYDTA (Dynein light chain n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WU97_HYDTA)

HSP 1 Score: 94.4 bits (233), Expect = 2.050e-23
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   16 VIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFST 261
            VIK + M  +MQ+ A+  AQDA+   N+EKDIA  +K  F+ LY   WHC VGRNFG YVTHE   F+Y Y+GQ+ + LF +
Sbjct:   11 VIKNADMVDEMQQRAVDCAQDAMEKFNIEKDIAAHIKKEFDKLYSPTWHCIVGRNFGSYVTHESKHFIYFYMGQVAILLFKS 92
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BLAST of mRNA_H-canaliculatus_F_contig1297.2466.1 vs. uniprot
Match: A0A068WE66_ECHGR (Dynein light chain n=3 Tax=Echinococcus TaxID=6209 RepID=A0A068WE66_ECHGR)

HSP 1 Score: 94.7 bits (234), Expect = 2.330e-23
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:   16 VIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFST 261
            V+K + MA DMQ+ A+  AQDA+   ++EKDIA  +K  F+ LY   WHC VGRNFG YVTHE   F+Y Y+GQ+ + LF +
Sbjct:   28 VVKNADMAEDMQQRAVDCAQDAMNKYSVEKDIAAHIKKEFDRLYSPTWHCIVGRNFGSYVTHETKHFIYFYMGQVAILLFKS 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1297.2466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM6_ECTSI1.780e-5797.73Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A836CI24_9STRA7.030e-4679.55Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2STQ1_9STRA8.870e-3462.50Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A7S1UG18_9STRA3.120e-3362.20Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A7S1C452_9STRA4.950e-2858.54Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014... [more]
A0A0R3WWJ5_HYDTA4.050e-2452.44Dynein light chain n=2 Tax=Hydatigena taeniaeformi... [more]
K3WKC4_GLOUD4.650e-2456.98Dynein light chain n=1 Tax=Globisporangium ultimum... [more]
U4LB13_PYROM2.020e-2351.22Dynein light chain n=1 Tax=Pyronema omphalodes (st... [more]
A0A0R3WU97_HYDTA2.050e-2351.22Dynein light chain n=1 Tax=Hydatigena taeniaeformi... [more]
A0A068WE66_ECHGR2.330e-2351.22Dynein light chain n=3 Tax=Echinococcus TaxID=6209... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1297contigH-canaliculatus_F_contig1297:22007..23516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue4.8e-44
Seed eggNOG ortholog2880.D8LRM6
KEGG koko:K10418
KEGG Pathwayko04962,map04962
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDynein light chain, type 1/2
Ec32 orthologEc-12_000380.1
Exons3
Model size267
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1297.2466.1prot_H-canaliculatus_F_contig1297.2466.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1297 22007..23516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.5341825-CDS-H-canaliculatus_F_contig1297:22006..220571622929027.5341825-CDS-H-canaliculatus_F_contig1297:22006..22057Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1297 22007..22057 +
1696845652.8286316-CDS-H-canaliculatus_F_contig1297:22006..220571696845652.8286316-CDS-H-canaliculatus_F_contig1297:22006..22057Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1297 22007..22057 +
1622929027.5596025-CDS-H-canaliculatus_F_contig1297:22626..227301622929027.5596025-CDS-H-canaliculatus_F_contig1297:22626..22730Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1297 22627..22730 +
1696845652.855839-CDS-H-canaliculatus_F_contig1297:22626..227301696845652.855839-CDS-H-canaliculatus_F_contig1297:22626..22730Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1297 22627..22730 +
1622929027.581177-CDS-H-canaliculatus_F_contig1297:23404..235161622929027.581177-CDS-H-canaliculatus_F_contig1297:23404..23516Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1297 23405..23516 +
1696845652.868063-CDS-H-canaliculatus_F_contig1297:23404..235161696845652.868063-CDS-H-canaliculatus_F_contig1297:23404..23516Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1297 23405..23516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1297.2466.1

>prot_H-canaliculatus_F_contig1297.2466.1 ID=prot_H-canaliculatus_F_contig1297.2466.1|Name=mRNA_H-canaliculatus_F_contig1297.2466.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=89bp
MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYP
SLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFSTA*
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mRNA from alignment at H-canaliculatus_F_contig1297:22007..23516+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1297.2466.1 ID=mRNA_H-canaliculatus_F_contig1297.2466.1|Name=mRNA_H-canaliculatus_F_contig1297.2466.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1510bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1297:22007..23516+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGGCGCGACCGGTAATCAAGACGAGCACAATGGCACCCGATATGCA
GGTCAGCGTACAGCAGGTCTAGACACAGTCGGCAAGCCGGTTGCAGTTGT
TCCTTTCTCTTCTCTTTCGCCATATTCGTGAACCAAACAACCACTAGTCG
TCAGCTGGCATCTTTACCCAGACGGGGAATACAAGGGGTTCACGTAATTT
AGGGAAGATAAATCGAAGACGCCCCCGAGCCAGCCGGACATCGTCGGGGG
GGGGAAGTCGGGCATCGTCGGGGGGGGGAAGTGTAAAGCCATACCCGTAG
TTTGGACAAAACAGTAGACGCAGATGATTTCAACGGCTAACTCATTGGTG
GGCTTGCTTGTAAAAATATCACAAATGTTTCATTTGATGGAGTTGAAACC
CAGATAACGTTATTGCACCGACTTTTGTCTACCTAACCTACATATCGGTG
GCTGTTTTGCCTTTTTTCGACTAGCGTACTGTAGTGGGGTGCATGGAGTA
AGAAAGAGTTTACATATCTGAGGAAAGCCAGCAGGATAGACCTAGCCTAC
AGCGCCTCTCCTTCTTGTATCCTAGGAGGCTGAACCCGACTGTAACTTAC
TTCACTTCATCTCCAATCAGGAGGCTGCAATCCAGGTTGCGCAGGACGCA
ATCCGTGATAACAACCTGGAGAAAGACATCGCAAACGCAGTTAAAGCTGC
GTTCGAAGGGCTCTATCCATCTCTGTGAGTAGCGAGTCTAGTTGAACAAC
GCTCGAAATTGCTATGTGGCTTTCTGAGGGAGCGATCGTTTGTTTCATGA
GGCTACGGTGTAAGCTCTTCGCGAAATCGTTCGACGAGCCTAGGAATCTG
CACATGAAGGTAGGCGAAGGGTTCTGCCCCTGAATACTCTGTTCGTATGT
CGAGCCTGTAGCAGGGGAATCAATCGTGATTCGAGGCATGGAATATTCTC
CAGCAGCTCTCAGCACTGCTGCTGCTCTGCACCATGATCGATTATGGATG
TAGAACTTTTCTCGGAAGGTGACAAATGTATCGTGGCATCGCCTCACACG
TGGCATTCTTCAGATCCGTTTACTCAACTCGGAAATAGGGACGAAAAGGG
GCTCCGTATACAACAAGGTTGCCATTCCACTCGTCGTTCGTAGGGCGCCA
GGAATACGGACGAATATTTAAGCTGGCTACGAAGCGCAAACGATTCCGTC
ATATTGCCAGTCAATTTCGCGTAAGTGTGATGCCACTTGACATCTTCCTG
CCGAAGCGAAGCGTGGCGGGAATAGCTTCGCGTGACGTAACTGAAGGGTC
TTTTTCAGACAGCGATGACAAACCGCCCACATAAACATCAAGCCTAACAT
CGATCGATTATTGCCGAACGGCGTGCACGAATGGGTGTAAACGTACAGGT
GGCACTGCTTCGTCGGTCGAAATTTTGGGTGTTACGTAACGCATGAGCAC
ACGAAATTCGTCTACCTGTACATCGGCCAGCTGGGTGTTTGCCTGTTTTC
GACGGCATAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1297:22007..23516+

>mRNA_H-canaliculatus_F_contig1297.2466.1 ID=mRNA_H-canaliculatus_F_contig1297.2466.1|Name=mRNA_H-canaliculatus_F_contig1297.2466.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=534bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1297:22007..23516+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGGCGCGACCGGTAATCAAGACGAGCACAATGGCACCCGATATGCA
GATGTCGGCGCGACCGGTAATCAAGACGAGCACAATGGCACCCGATATGC
AGGAGGCTGCAATCCAGGTTGCGCAGGACGCAATCCGTGATAACAACCTG
GAGAAAGACATCGCAAACGCAGTTAAAGCTGCGTTCGAAGGGCTCTATCC
ATCTCTGAGGCTGCAATCCAGGTTGCGCAGGACGCAATCCGTGATAACAA
CCTGGAGAAAGACATCGCAAACGCAGTTAAAGCTGCGTTCGAAGGGCTCT
ATCCATCTCTGTGGCACTGCTTCGTCGGTCGAAATTTTGGGTGTTACGTA
ACGCATGAGCACACGAAATTCGTCTACCTGTACATCGGCCAGCTGGGTGT
TTGCCTGTTTTCGACGGCATAAGTGGCACTGCTTCGTCGGTCGAAATTTT
GGGTGTTACGTAACGCATGAGCACACGAAATTCGTCTACCTGTACATCGG
CCAGCTGGGTGTTTGCCTGTTTTCGACGGCATAA
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