prot_H-canaliculatus_F_contig12964.2463.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig12964.2463.1
Unique Nameprot_H-canaliculatus_F_contig12964.2463.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length314
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12964.2463.1 vs. uniprot
Match: A0A6H5KXF7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF7_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 3.470e-96
Identity = 181/359 (50.42%), Postives = 211/359 (58.77%), Query Frame = 0 
Query:    1 MDEQQQVDVVDKMIRSAGKFDGTGFDKWYNHAQDCFILRCHGIAEIIAGYKCPEPVHRRARGRPAATRPNTPSE--------------------------------------------SSAVGEPIEGDSEQPPSLTDQPTADAAAXXXXXXXXXXXXXXXXXXXXXXXXTVPTSILWTMPDTVTNRDEIRQWHIENRMLGTFLSMCTTGAAKKFLAKFKPKKGMMSNGILAWEALVTKYRNPSRQRQRILTKKLMYMTMSADQDPDAFLQEMSELRDEYHEMGSVMSDNQFMDIILECLPESLYSGIKCEAETKDDLTLEQVMYTMRNLYVNRQDA-GSSRTARGRSSAMVASTPKHC 314
            MDEQ+Q D+VDKMIRSAGKF G+GF +WY  A DCF LR  GI  II G KCPEP ++  R   + +R                                                  S A  +                      XXXXXX                   +P +ILW MP T+ NRDEI  WH  N MLG FLSMCTTGAAKKF+A FKPK  MM +GI+AW+ALV KYRNPSRQRQ+IL KKL  MTM  D DPDAF+ +M+ELRDE   +GS + D+QFM+IIL+CLPE LYSGIK EAETKDDLTLEQ +YTMRNLY+NR++A GSSR A+GRSSAMVAST K C
Sbjct:    1 MDEQKQADIVDKMIRSAGKFSGSGFTEWYEQAMDCFRLRGQGILSIIQGQKCPEPKYQAVRRGRSLSRERRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDAALQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSDAPSDVPVQFTYATTTELPAAILWEMPVTIINRDEIIAWHSSNTMLGAFLSMCTTGAAKKFVATFKPKPDMMFHGIVAWKALVKKYRNPSRQRQKILFKKLYNMTMDVDMDPDAFMHDMTELRDELQLLGSPIPDDQFMNIILDCLPEELYSGIKYEAETKDDLTLEQALYTMRNLYINRKEASGSSRAAKGRSSAMVASTTKTC 359
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12964.2463.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXF7_9PHAE3.470e-9650.42Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 188..290
e-value: 1.2E-12
score: 47.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12964contigH-canaliculatus_F_contig12964:1623..2564 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12964.2463.1mRNA_H-canaliculatus_F_contig12964.2463.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig12964 1612..2564 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig12964.2463.1 ID=prot_H-canaliculatus_F_contig12964.2463.1|Name=mRNA_H-canaliculatus_F_contig12964.2463.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=314bp
MDEQQQVDVVDKMIRSAGKFDGTGFDKWYNHAQDCFILRCHGIAEIIAGY
KCPEPVHRRARGRPAATRPNTPSESSAVGEPIEGDSEQPPSLTDQPTADA
AAAASSASATTSTQATPATSASASTATVPTSILWTMPDTVTNRDEIRQWH
IENRMLGTFLSMCTTGAAKKFLAKFKPKKGMMSNGILAWEALVTKYRNPS
RQRQRILTKKLMYMTMSADQDPDAFLQEMSELRDEYHEMGSVMSDNQFMD
IILECLPESLYSGIKCEAETKDDLTLEQVMYTMRNLYVNRQDAGSSRTAR
GRSSAMVASTPKHC
back to top