mRNA_H-canaliculatus_F_contig12964.2463.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12964.2463.1
Unique NamemRNA_H-canaliculatus_F_contig12964.2463.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12964.2463.1 vs. uniprot
Match: A0A6H5KXF7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF7_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 5.460e-96
Identity = 181/359 (50.42%), Postives = 211/359 (58.77%), Query Frame = 3 
Query:   12 MDEQQQVDVVDKMIRSAGKFDGTGFDKWYNHAQDCFILRCHGIAEIIAGYKCPEPVHRRARGRPAATRPNTPSE--------------------------------------------SSAVGEPIEGDSEQPPSLTDQPTADAAAXXXXXXXXXXXXXXXXXXXXXXXXTVPTSILWTMPDTVTNRDEIRQWHIENRMLGTFLSMCTTGAAKKFLAKFKPKKGMMSNGILAWEALVTKYRNPSRQRQRILTKKLMYMTMSADQDPDAFLQEMSELRDEYHEMGSVMSDNQFMDIILECLPESLYSGIKCEAETKDDLTLEQVMYTMRNLYVNRQDA-GSSRTARGRSSAMVASTPKHC 953
            MDEQ+Q D+VDKMIRSAGKF G+GF +WY  A DCF LR  GI  II G KCPEP ++  R   + +R                                                  S A  +                      XXXXXX                   +P +ILW MP T+ NRDEI  WH  N MLG FLSMCTTGAAKKF+A FKPK  MM +GI+AW+ALV KYRNPSRQRQ+IL KKL  MTM  D DPDAF+ +M+ELRDE   +GS + D+QFM+IIL+CLPE LYSGIK EAETKDDLTLEQ +YTMRNLY+NR++A GSSR A+GRSSAMVAST K C
Sbjct:    1 MDEQKQADIVDKMIRSAGKFSGSGFTEWYEQAMDCFRLRGQGILSIIQGQKCPEPKYQAVRRGRSLSRERRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDAALQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSDAPSDVPVQFTYATTTELPAAILWEMPVTIINRDEIIAWHSSNTMLGAFLSMCTTGAAKKFVATFKPKPDMMFHGIVAWKALVKKYRNPSRQRQKILFKKLYNMTMDVDMDPDAFMHDMTELRDELQLLGSPIPDDQFMNIILDCLPEELYSGIKYEAETKDDLTLEQALYTMRNLYINRKEASGSSRAAKGRSSAMVASTTKTC 359
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12964.2463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXF7_9PHAE5.460e-9650.42Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12964contigH-canaliculatus_F_contig12964:1612..2564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size954
Cds size942
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.2258244-UTR-H-canaliculatus_F_contig12964:1611..16221622929027.2258244-UTR-H-canaliculatus_F_contig12964:1611..1622Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12964 1612..1622 +
1696845652.6594174-UTR-H-canaliculatus_F_contig12964:1611..16221696845652.6594174-UTR-H-canaliculatus_F_contig12964:1611..1622Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12964 1612..1622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.241063-CDS-H-canaliculatus_F_contig12964:1622..25641622929027.241063-CDS-H-canaliculatus_F_contig12964:1622..2564Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12964 1623..2564 +
1696845652.6675413-CDS-H-canaliculatus_F_contig12964:1622..25641696845652.6675413-CDS-H-canaliculatus_F_contig12964:1622..2564Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12964 1623..2564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12964.2463.1prot_H-canaliculatus_F_contig12964.2463.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12964 1623..2564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12964.2463.1

>prot_H-canaliculatus_F_contig12964.2463.1 ID=prot_H-canaliculatus_F_contig12964.2463.1|Name=mRNA_H-canaliculatus_F_contig12964.2463.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=314bp
MDEQQQVDVVDKMIRSAGKFDGTGFDKWYNHAQDCFILRCHGIAEIIAGY
KCPEPVHRRARGRPAATRPNTPSESSAVGEPIEGDSEQPPSLTDQPTADA
AAAASSASATTSTQATPATSASASTATVPTSILWTMPDTVTNRDEIRQWH
IENRMLGTFLSMCTTGAAKKFLAKFKPKKGMMSNGILAWEALVTKYRNPS
RQRQRILTKKLMYMTMSADQDPDAFLQEMSELRDEYHEMGSVMSDNQFMD
IILECLPESLYSGIKCEAETKDDLTLEQVMYTMRNLYVNRQDAGSSRTAR
GRSSAMVASTPKHC
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mRNA from alignment at H-canaliculatus_F_contig12964:1612..2564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12964.2463.1 ID=mRNA_H-canaliculatus_F_contig12964.2463.1|Name=mRNA_H-canaliculatus_F_contig12964.2463.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=953bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12964:1612..2564+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGTGAAACCATGGACGAACAACAGCAAGTGGACGTCGTCGACAAAATG
ATCCGATCAGCAGGAAAGTTCGACGGCACCGGGTTTGACAAGTGGTATAA
TCATGCCCAGGACTGCTTCATACTGCGTTGCCACGGTATTGCCGAAATTA
TTGCCGGGTACAAGTGCCCCGAGCCCGTTCATCGACGGGCACGGGGACGC
CCAGCGGCGACTAGGCCTAATACGCCCTCTGAATCTTCGGCGGTTGGCGA
ACCCATCGAGGGAGACAGCGAACAGCCTCCTTCGCTCACCGACCAGCCAA
CGGCTGACGCTGCTGCAGCAGCCTCTTCGGCGTCGGCGACGACCTCAACA
CAGGCAACTCCTGCGACTTCCGCTTCAGCATCAACAGCGACCGTTCCCAC
TTCAATCTTGTGGACGATGCCCGACACCGTCACCAACAGGGACGAGATTC
GGCAGTGGCACATCGAGAACCGGATGCTGGGTACGTTTTTATCAATGTGC
ACCACCGGAGCGGCAAAGAAGTTTCTAGCGAAGTTCAAGCCAAAAAAGGG
CATGATGTCGAACGGTATATTAGCATGGGAGGCTCTCGTGACAAAATATC
GCAACCCTTCGCGCCAACGGCAGCGCATCCTCACTAAAAAGCTCATGTAT
ATGACTATGAGTGCGGACCAAGACCCGGATGCCTTTCTGCAGGAAATGTC
GGAGTTACGGGACGAATATCATGAAATGGGGAGCGTCATGAGCGACAACC
AGTTTATGGACATCATTCTGGAGTGTCTCCCGGAGTCGCTGTATTCCGGG
ATTAAGTGTGAGGCTGAGACCAAGGACGATCTCACCCTCGAACAAGTTAT
GTACACGATGCGCAACCTGTACGTAAACCGGCAAGACGCCGGATCTTCGC
GTACTGCACGGGGTCGCTCTTCCGCAATGGTGGCATCCACTCCGAAGCAT
TGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12964:1612..2564+

>mRNA_H-canaliculatus_F_contig12964.2463.1 ID=mRNA_H-canaliculatus_F_contig12964.2463.1|Name=mRNA_H-canaliculatus_F_contig12964.2463.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1884bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12964:1612..2564+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGAACAACAGCAAGTGGACGTCGTCGACAAAATGATCCGATCAGC
AGGAAAGTTCGACGGCACCGGGTTTGACAAGTGGTATAATCATGCCCAGG
ACTGCTTCATACTGCGTTGCCACGGTATTGCCGAAATTATTGCCGGGTAC
AAGTGCCCCGAGCCCGTTCATCGACGGGCACGGGGACGCCCAGCGGCGAC
TAGGCCTAATACGCCCTCTGAATCTTCGGCGGTTGGCGAACCCATCGAGG
GAGACAGCGAACAGCCTCCTTCGCTCACCGACCAGCCAACGGCTGACGCT
GCTGCAGCAGCCTCTTCGGCGTCGGCGACGACCTCAACACAGGCAACTCC
TGCGACTTCCGCTTCAGCATCAACAGCGACCGTTCCCACTTCAATCTTGT
GGACGATGCCCGACACCGTCACCAACAGGGACGAGATTCGGCAGTGGCAC
ATCGAGAACCGGATGCTGGGTACGTTTTTATCAATGTGCACCACCGGAGC
GGCAAAGAAGTTTCTAGCGAAGTTCAAGCCAAAAAAGGGCATGATGTCGA
ACGGTATATTAGCATGGGAGGCTCTCGTGACAAAATATCGCAACCCTTCG
CGCCAACGGCAGCGCATCCTCACTAAAAAGCTCATGTATATGACTATGAG
TGCGGACCAAGACCCGGATGCCTTTCTGCAGGAAATGTCGGAGTTACGGG
ACGAATATCATGAAATGGGGAGCGTCATGAGCGACAACCAGTTTATGGAC
ATCATTCTGGAGTGTCTCCCGGAGTCGCTGTATTCCGGGATTAAGTGTGA
GGCTGAGACCAAGGACGATCTCACCCTCGAACAAGTTATGTACACGATGC
GCAACCTGTACGTAAACCGGCAAGACGCCGGATCTTCGCGTACTGCACGG
GGTCGCTCTTCCGCAATGGTGGCATCCACTCCGAAGCATTGTATGGACGA
ACAACAGCAAGTGGACGTCGTCGACAAAATGATCCGATCAGCAGGAAAGT
TCGACGGCACCGGGTTTGACAAGTGGTATAATCATGCCCAGGACTGCTTC
ATACTGCGTTGCCACGGTATTGCCGAAATTATTGCCGGGTACAAGTGCCC
CGAGCCCGTTCATCGACGGGCACGGGGACGCCCAGCGGCGACTAGGCCTA
ATACGCCCTCTGAATCTTCGGCGGTTGGCGAACCCATCGAGGGAGACAGC
GAACAGCCTCCTTCGCTCACCGACCAGCCAACGGCTGACGCTGCTGCAGC
AGCCTCTTCGGCGTCGGCGACGACCTCAACACAGGCAACTCCTGCGACTT
CCGCTTCAGCATCAACAGCGACCGTTCCCACTTCAATCTTGTGGACGATG
CCCGACACCGTCACCAACAGGGACGAGATTCGGCAGTGGCACATCGAGAA
CCGGATGCTGGGTACGTTTTTATCAATGTGCACCACCGGAGCGGCAAAGA
AGTTTCTAGCGAAGTTCAAGCCAAAAAAGGGCATGATGTCGAACGGTATA
TTAGCATGGGAGGCTCTCGTGACAAAATATCGCAACCCTTCGCGCCAACG
GCAGCGCATCCTCACTAAAAAGCTCATGTATATGACTATGAGTGCGGACC
AAGACCCGGATGCCTTTCTGCAGGAAATGTCGGAGTTACGGGACGAATAT
CATGAAATGGGGAGCGTCATGAGCGACAACCAGTTTATGGACATCATTCT
GGAGTGTCTCCCGGAGTCGCTGTATTCCGGGATTAAGTGTGAGGCTGAGA
CCAAGGACGATCTCACCCTCGAACAAGTTATGTACACGATGCGCAACCTG
TACGTAAACCGGCAAGACGCCGGATCTTCGCGTACTGCACGGGGTCGCTC
TTCCGCAATGGTGGCATCCACTCCGAAGCATTGT
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