mRNA_H-canaliculatus_F_contig12960.2462.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12960.2462.1 vs. uniprot
Match: D7FX21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX21_ECTSI) HSP 1 Score: 300 bits (767), Expect = 1.910e-91 Identity = 183/258 (70.93%), Postives = 207/258 (80.23%), Query Frame = 1
Query: 1 NALAIQSIYDEADQTPGVSMKKIKKKCQRWLNKKAGEDQKMQQANQPAVVRTAGAGXXXXXXXXXLAAQRPTQLVMFCPNNIAPQVIGRGGQTINKLMKDSKAKIVVKPFPDKSG-DIIITGTANTVNTAKRLLEDFYLSKGYEPATLPPPFSAANQQQQLGHLGLARGAAPRAAAARPLAGGGFXXXXXXGPAPGPVVVEDGAWGGELRQLLKVAGCEHHLDGFRRDQLDGEVLLMMERRDFARMGVTEVGLMVRLL 771
N LA+QSIYDEADQTPG SMKKIKKKCQR+LNKKAGEDQK+QQA+QPA VR A XXXXXXXX AQRPTQ MFCPNNIAPQ+IG+ GQT+NKLMKDS+AKIVVKP+PD+SG D+IITGT N V TAKRL+E+FY SKG +P+ LPPP SA ++ A GA RA A+P+ GG XXXXXX VVVEDGAWGGELRQLL+VAGCEHHL+ FR DQLDGEVLLMM+RRDF RMGVTE G +R+L
Sbjct: 697 NTLAVQSIYDEADQTPGASMKKIKKKCQRYLNKKAGEDQKLQQASQPAPVRGAXXXXXXXXXXX---AQRPTQHDMFCPNNIAPQLIGKQGQTVNKLMKDSRAKIVVKPYPDRSGNDVIITGTPNAVKTAKRLVEEFYRSKGCQPSALPPPSSAVAARK-------AEGA--RARPAQPVTGGPXXXXXXXXXX---VVVEDGAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVTE-GEQIRIL 938
BLAST of mRNA_H-canaliculatus_F_contig12960.2462.1 vs. uniprot
Match: A0A6H5J8V2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8V2_9PHAE) HSP 1 Score: 228 bits (581), Expect = 6.180e-65 Identity = 147/299 (49.16%), Postives = 174/299 (58.19%), Query Frame = 1
Query: 1 NALAIQSIYDEADQTPGVSMKKIKKKCQRWLNKKAGE----DQKMQQANQPAV-----VRTAGAGXXXXXXXXXLAA--QRPTQLVMFCPNNIAPQVIGRGGQTINKLMKDSKAKIVVKPFPDKSG-DIIITGTANTVNTAKRLLEDFYLSKGYEPATLPP-------------------------PFSAANQQQQLGHLGLARG---AAPRAAAARPLAGGGFXXXXXXGPAPGPVVVEDGAW----------GGELRQLLKVAGCEHHLDGFRRDQLDGEVLLMMERRDFARMGVTE 747
NALA+Q+I+DEADQTPG MKK+KKKC++WLNKK GE Q++ QANQP +R AG G AA QRPTQ MFCPN IA QVIGRGGQT+N+LMK+S+A+IV+KP+ DK+G D++ITG+ TA+RL+EDFY SKG EP LPP P + +GHLG R A P AAAA + P PVV G GGEL QLL+ A CEHHL+ F RDQLDGEVLL MERRDF RMGVTE
Sbjct: 649 NALAVQAIHDEADQTPGADMKKMKKKCKKWLNKKEGEMREEQQRLLQANQPPPNPALGLRQAGPGFGVPTPPVAAAAAAQRPTQYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKPYADKTGHDVVITGSPQA--TARRLVEDFYRSKGIEPTHLPPXXXXXXXXXXXXXGRPGGVAPRARLPDPMMPTEAMIGHLGRGRTMAVAGPAAAAAAGMRAPSGAIPQGARPVAQPVVYGGGXXXXXXXXVDVSGGELPQLLRAARCEHHLERFLRDQLDGEVLLEMERRDFDRMGVTE 945
BLAST of mRNA_H-canaliculatus_F_contig12960.2462.1 vs. uniprot
Match: D7FX18_ECTSI (KH domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX18_ECTSI) HSP 1 Score: 223 bits (569), Expect = 1.010e-63 Identity = 144/299 (48.16%), Postives = 173/299 (57.86%), Query Frame = 1
Query: 1 NALAIQSIYDEADQTPGVSMKKIKKKCQRWLNKKAGE----DQKMQQANQPAVVRTAG---AGXXXXXXXXXLAAQRPTQLVMFCPNNIAPQVIGRGGQTINKLMKDSKAKIVVKPFPDKSG-DIIITGTANTVNTAKRLLEDFYLSKGYEPATLPPPFSAANQ---------------------------QQQLGHLGLAR---GAAPRAAA------------ARPLAGGGFXXXXXXGPAPGPVVVEDGAWGGELRQLLKVAGCEHHLDGFRRDQLDGEVLLMMERRDFARMGVTE 747
NALA+Q+I+DEADQTPG MKKIKKKC++WLNKK GE Q++ QANQP G AG +AAQRPT+ MFCPN IA QVIGRGGQT+N+LMK+S+A+IV+K + DK+G D++ITG+ V T +RL+EDFY SKG EP L PP + +GHLG R GA P AA ARP+A XXX G G EL QLL+ A CEHHL+ F+RDQLDGEVLL MERR+F RMGVTE
Sbjct: 507 NALAVQAIHDEADQTPGADMKKIKKKCKKWLNKKEGEMREEQQRLLQANQPPPNPALGLRQAGPGFGVPTPPMAAQRPTEYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKTYADKTGHDVVITGSPQAVLTGRRLVEDFYRSKGIEPTLLQPPSXXXXXXXXXXXXXGRPGGVAPRARLPDPMMPTEAMIGHLGRGRTMAGAGPAAAVGMRAPSGAIPQGARPVAQXXXXXXMFGGXXXXXXXXXVDVSGVELPQLLRAARCEHHLERFKRDQLDGEVLLEMERREFDRMGVTE 805
BLAST of mRNA_H-canaliculatus_F_contig12960.2462.1 vs. uniprot
Match: A0A6H5JKP4_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKP4_9PHAE) HSP 1 Score: 160 bits (405), Expect = 1.130e-43 Identity = 114/255 (44.71%), Postives = 139/255 (54.51%), Query Frame = 1
Query: 199 AAQRPTQLVMFCPNNIAPQVIGRGGQTINKLMKDSKAKIVVKPFPDKSG-DIIITGTANTVNTAK---------------------------------------------------------------RLLEDFYLSKGYEPATLPPPFSAANQQQQLGHLGLARGAAPRAAAARPLAGGGFXXXXXXGPAPGPVVVEDGAWGGELRQLLKVAGCEHHLDGFRRDQLDGEVLLMMERRDFARMGVTEVGLMVRLL 771
A P+ + NIAPQ+IG+ GQT++KLMK+S+AKIVVKP+PD+SG D++ITGT N V +K R+ E+FY SKG +P LPPP SA ++ A GA RA A+P+ G XXXXXX VVVEDGAWGGELRQLL+VAGCEHHL+ FR DQLDGEVLLMM+RRDF RMGVT VG +R+L
Sbjct: 38 AVLAPSPSPLLRAQNIAPQLIGKQGQTVSKLMKESRAKIVVKPYPDRSGNDVVITGTPNAVKVSKSRVLGSTLDCCRGCVRVRCLAIPLYFQAVVVGRCDGVGAGCFVVVVNALSLRHPLQCTRRVTMRVEEEFYRSKGCQPTALPPPSSAVAAARK------AEGA--RARPAQPVTGXXXXXXXXXXXX---VVVEDGAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVT-VGEQIRIL 280
BLAST of mRNA_H-canaliculatus_F_contig12960.2462.1 vs. uniprot
Match: A0A6H5JGK6_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK6_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 2.450e-9 Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1
Query: 1 NALAIQSIYDEADQTPGVSMKKIKKKCQRWLNKKAGED 114
N LA+QSIYDEADQTPG S+KKIKKKC++WLNKK GE+
Sbjct: 1099 NTLAVQSIYDEADQTPGASIKKIKKKCKKWLNKKEGEN 1136 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12960.2462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12960.2462.1 >prot_H-canaliculatus_F_contig12960.2462.1 ID=prot_H-canaliculatus_F_contig12960.2462.1|Name=mRNA_H-canaliculatus_F_contig12960.2462.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=257bp NALAIQSIYDEADQTPGVSMKKIKKKCQRWLNKKAGEDQKMQQANQPAVVback to top mRNA from alignment at H-canaliculatus_F_contig12960:716..2968+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12960.2462.1 ID=mRNA_H-canaliculatus_F_contig12960.2462.1|Name=mRNA_H-canaliculatus_F_contig12960.2462.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2253bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12960:716..2968+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12960:716..2968+ >mRNA_H-canaliculatus_F_contig12960.2462.1 ID=mRNA_H-canaliculatus_F_contig12960.2462.1|Name=mRNA_H-canaliculatus_F_contig12960.2462.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1542bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12960:716..2968+ (Hapterophycus canaliculatus Oshoro5f female)back to top |