mRNA_H-canaliculatus_F_contig12958.2458.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12958.2458.1
Unique NamemRNA_H-canaliculatus_F_contig12958.2458.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12958.2458.1 vs. uniprot
Match: A0A6H5KW63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW63_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.760e-27
Identity = 53/82 (64.63%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:   31 RASSMWICPETKLREEQLASRTSSDLPPTGRFRHMWLDETETIVNKERSLLFCAPPNAGSLQFRMLAKRMQGISHWSVHDDR 276
            R++ MW CPET+L EE LA RTS+ LPP       WL E+ETIV  E SLLFCA PN GSLQFRMLAKRMQGI HWS  ++R
Sbjct:    2 RSADMWTCPETRLEEEMLAPRTSAQLPPLTNETREWLAESETIVVMEPSLLFCAAPNTGSLQFRMLAKRMQGIPHWSTSNNR 83
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12958.2458.1 vs. uniprot
Match: D8LQ23_ECTSI (Exostosin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ23_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.740e-26
Identity = 56/94 (59.57%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 AGDGTGEDGGRASSMWICP--ETKLREEQLASRTSSDLPPTGRFRHMWLDETETIVNKERSLLFCAPPNAGSLQFRMLAKRMQGISHWSVHDDR 276
            AG G  E  GR++ MW C   + K  E   A RT++ LPP       WL ETETIVN+ERSLLFCAPPN GSLQFRMLAKRMQG+ HW+V +DR
Sbjct:  518 AGGGGTEGEGRSADMWTCNRYDPKGEEVDAAPRTTAKLPPPAGATRQWLAETETIVNEERSLLFCAPPNTGSLQFRMLAKRMQGLPHWAVSNDR 611
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12958.2458.1 vs. uniprot
Match: A0A6H5JMN7_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMN7_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 7.140e-15
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:  136 WLDETETIVNKERSLLFCAPPNAGSLQFRMLAKRMQGISHWSVHDDR 276
            WL E+ETIV  ERSLLFCA PN GSLQFRMLAKRMQGI HW V ++R
Sbjct:  305 WLTESETIVVMERSLLFCAAPNTGSLQFRMLAKRMQGIPHWGVSNNR 351
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12958.2458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KW63_9PHAE1.760e-2764.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ23_ECTSI1.740e-2659.57Exostosin domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JMN7_9PHAE7.140e-1576.60Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12958contigH-canaliculatus_F_contig12958:116..2373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue1.1e-22
Seed eggNOG ortholog2880.D8LQ23
EggNOG free text desc.macromolecule glycosylation
EggNOG OGsKOG1021@1,KOG1021@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionExostosin-like
Ec32 orthologEc-15_001230.1
Exons3
Model size276
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12958.2458.1prot_H-canaliculatus_F_contig12958.2458.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12958 116..2373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929026.2713764-CDS-H-canaliculatus_F_contig12958:115..2431622929026.2713764-CDS-H-canaliculatus_F_contig12958:115..243Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12958 116..243 +
1696845652.1417665-CDS-H-canaliculatus_F_contig12958:115..2431696845652.1417665-CDS-H-canaliculatus_F_contig12958:115..243Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12958 116..243 +
1622929026.2854266-CDS-H-canaliculatus_F_contig12958:699..8141622929026.2854266-CDS-H-canaliculatus_F_contig12958:699..814Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12958 700..814 +
1696845652.1574602-CDS-H-canaliculatus_F_contig12958:699..8141696845652.1574602-CDS-H-canaliculatus_F_contig12958:699..814Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12958 700..814 +
1622929026.2976592-CDS-H-canaliculatus_F_contig12958:2340..23731622929026.2976592-CDS-H-canaliculatus_F_contig12958:2340..2373Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12958 2341..2373 +
1696845652.1720738-CDS-H-canaliculatus_F_contig12958:2340..23731696845652.1720738-CDS-H-canaliculatus_F_contig12958:2340..2373Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12958 2341..2373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12958.2458.1

>prot_H-canaliculatus_F_contig12958.2458.1 ID=prot_H-canaliculatus_F_contig12958.2458.1|Name=mRNA_H-canaliculatus_F_contig12958.2458.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=92bp
AGDGTGEDGGRASSMWICPETKLREEQLASRTSSDLPPTGRFRHMWLDET
ETIVNKERSLLFCAPPNAGSLQFRMLAKRMQGISHWSVHDDR
back to top

mRNA from alignment at H-canaliculatus_F_contig12958:116..2373+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12958.2458.1 ID=mRNA_H-canaliculatus_F_contig12958.2458.1|Name=mRNA_H-canaliculatus_F_contig12958.2458.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2258bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12958:116..2373+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGGCGATGGGACGGGCGAGGACGGGGGGAGGGCCAGCAGCATGTGGAT
CTGTCCGGAGACTAAGCTACGCGAAGAGCAGCTGGCCTCGAGAACGTCCA
GCGACCTTCCACCCACCGGGAGGTTCAGGTTCGCGGCGTTGGTTGTTTCT
TTCATTGAGTACTTGCTGCTTTCAACGCGTTTCGTTCCGGTGCTGCTAGT
TCTTGACTCTTGTTGTTCATGCAATGGGACACATAGAACCGCCGCAAGGC
GTCTCGGCTACCGCGGGGGTCCGCAAACCACAACCAGGGCGTTGCGTGGA
TAATTCTTGAGTCTGGATCGCCACACGCGAGACAATCTCGTAGCACCCGC
TTACCGCGCATGCGAGTACGTGAGCAAGTGGGTGTGGTCTCGAACATGGT
GCCCTCAAAGTGCAGACAACGCAAATGCCTTCCTTAACTTAATTGAATTA
CACCTCGTCGACTTGCCTCGATAAGGGGCGTCGCCTGTGTAGCGATGCCC
GCCCCTCCCCGCCCATCACATGCGTGATTGTAAACATACCCTCCTCCCCC
CATGCACTCGCACAATGGGGTGTCGATTGAGCAGGCATATGTGGCTGGAT
GAGACGGAGACAATCGTCAACAAGGAGCGATCTCTGCTGTTCTGCGCCCC
TCCCAATGCTGGGTCGCTGCAGTTCAGGATGCTCGCCAAGCGGATGCAGG
TGTAATGCGTGCGCATCTCTGTTCATTTCCTAAGTGCGATGGGTAGCTCT
TGACGGGACAAAAATGTTGAGTCCTGTCTAAGAGGGTATTCCTTTCGTGT
TGTTGGTCATTTTCTTGGAAAGGTTCACTCTTCAGATCGAGAGAACATCA
GCCAGAGGGCCATCGTTATCCATCAAGACCACCATTGTTTCTGAAGGACA
CCCTTGGAAAGGTGCCGCCTCCTTATCGTCTTTCAAGGACGACGCCCTCT
TTTCACATTTGGCGTCGACGAATTCCACTCATTCTTGTCGAACGCGAGAA
GTGCACATTTAACACCGATGGACTTTTGGCGCACAGAGCGGGGGGTGATG
TGGGAAGGCACGTGCAGGAAAGAAAAGATCGCCTGTGCACATACAAAGTA
TCGGTAGATACGACCCCGGCCGGGGTAACTTGCCGACCGGTTGTGTGTGG
GAAGAACCACTGTTGGAGATTCAGCTCTCCCGTGGTCAGGTGCAATATTT
CGAGAGCAAGGGAAGAGCCATCGACCCTTCCATTCCCTCGGAGAGCGCCA
CTCTGTAAACTCTATCTCTCCTTGCTAAATATCACGAAAGGGAAGCTAGT
CACCCTTAGCAGTGGGTGAATACTGCAATAGTACCGGGCTTTGTGTCTGG
CAGGAGCCAATGTCCTCACTGCTGTGCTTGTTTGTGTTTACCCGGGCGTC
CTTTGATTTGCTCGCAGCCACCAATAACATCGCTGCACGTGTGGCTGTGA
GCGGTGTAGCATCAATTGATAGCCATCCGTTCGTGGGGAAGGCCTGTACC
GCCTGGGACAGGGGCGGAGGGACAGGTGCAAGTTCGCAGCAAGGAGCCCC
TACGCTGCTCTATATGCAAGGGTCCGAACGCTATGACGTGTCCCTGCCAC
TGGTCGACTGGAATGGCCTCGTTGATGTGGCTCAAAGATCGCTGCAGTTA
ACTCCCCTGCCCTTTCCAAATGCACTCCTCTATTTGACCGTTGCTGCCCA
TTGCAGTACCCCCTCCTTCCGTTCCGTGGACCAAAAATCACGTGGAGATG
AGAGAAACCCTGATTAACGGATACTACCCGAATCCTTTGCTTCCCACATG
CCGGTTGCTGGTGCTGTCTAATCAGTCCACCTCGGGGGTGTGAAGCTGCC
AACCAACGCCAACGCCATTTTTTGCCACACAACACCACCAAATTACTTTT
GTTCACGGCTGCGCATCGCCTCCCCCCCCATCCGCACACAAACTCTCATC
GCGCGTTGGAAAACGTTCACAGATACACGAACCAACGAGTTGAACCAACG
AGTCCCCGCTCCGCAGCGAGGAATATAGAAGTCCTCCTTGGCTCACTATC
AAATACTCGGAGCACCAATATTCCACGCACTACGGAACCAAAAGCTTTTC
ATCCAGCTTTCTGGCTATAATGTTCCTTTCCTACCGATGCCTCGCCCCCC
ATCATTCTCGAACCATGCAATCGCGCGTAACACGCACCGTACTCGTGCCC
TCCATTCGGACGACCCAAAACCCAGGGAATCTCGCACTGGTCAGTTCACG
ACGACCGT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12958:116..2373+

>mRNA_H-canaliculatus_F_contig12958.2458.1 ID=mRNA_H-canaliculatus_F_contig12958.2458.1|Name=mRNA_H-canaliculatus_F_contig12958.2458.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=552bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12958:116..2373+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGGCGATGGGACGGGCGAGGACGGGGGGAGGGCCAGCAGCATGTGGAT
CTGTCCGGAGACTAAGCTACGCGAAGAGCAGCTGGCCTCGAGAACGTCCA
GCGACCTTCCACCCACCGGGAGGTTCAGGCCGGCGATGGGACGGGCGAGG
ACGGGGGGAGGGCCAGCAGCATGTGGATCTGTCCGGAGACTAAGCTACGC
GAAGAGCAGCTGGCCTCGAGAACGTCCAGCGACCTTCCACCCACCGGGAG
GTTCAGGCATATGTGGCTGGATGAGACGGAGACAATCGTCAACAAGGAGC
GATCTCTGCTGTTCTGCGCCCCTCCCAATGCTGGGTCGCTGCAGTTCAGG
ATGCTCGCCAAGCGGATGCAGGCATATGTGGCTGGATGAGACGGAGACAA
TCGTCAACAAGGAGCGATCTCTGCTGTTCTGCGCCCCTCCCAATGCTGGG
TCGCTGCAGTTCAGGATGCTCGCCAAGCGGATGCAGGGAATCTCGCACTG
GTCAGTTCACGACGACCGTGGAATCTCGCACTGGTCAGTTCACGACGACC
GT
back to top