prot_H-canaliculatus_F_contig12953.2456.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig12953.2456.1
Unique Nameprot_H-canaliculatus_F_contig12953.2456.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length215
Homology
BLAST of mRNA_H-canaliculatus_F_contig12953.2456.1 vs. uniprot
Match: A0A6H5KUQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUQ6_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 8.090e-29
Identity = 113/233 (48.50%), Postives = 127/233 (54.51%), Query Frame = 0
Query:    1 MSTLTDIFKVQDKVSTKKNKEEKEKDKGFKVASLFD-GL-AGAPPTTTARXXXXXXXXXXXXXXXXXXXXXSTVTTLSNGLEGTAAKGGTGEGPPAPETAGGVILSVGGLSSKNPGPVPSLAAAQPLT---------DAAASHDPAASAAVPLSETGK---------VLWRPLSDVVAFAARFVRTGKREDVESAWLGERRALTQDFKRKHKDAVKGRRGAGAGRGAASKKRR 213
            MS LTDIF V+DKVS+KKN+EEK+KDKGFK+ SLFD GL AG        XXXXXXXXXX   XXXXXXXX                                      L      P  SL++              DA     P  +  +P+S              LWRPL +VVA AARF+RTGKREDVE+AW+GERRALTQDFKRKHKDAVKGRRGA  G   ASKKRR
Sbjct:    1 MSALTDIFTVKDKVSSKKNREEKDKDKGFKITSLFDAGLTAGXXXXXXXXXXXXXXXXXXAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLVEGQARPAASLSSXXXXXXXXXXXXXGDAGGESQPGGT--LPVSXXXXXXXXVVVETALWRPLDEVVAIAARFMRTGKREDVEAAWIGERRALTQDFKRKHKDAVKGRRGAAGGGHRASKKRR 231          
BLAST of mRNA_H-canaliculatus_F_contig12953.2456.1 vs. uniprot
Match: D7FS94_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS94_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 2.680e-14
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 0
Query:  153 LSDVVAFAARFVRTGKREDVESAWLGERRALTQDFKRKHKDAVKGRRGA 201
            L D +A   RF+RTGKREDVE+AWLGERRALTQDFKRKHKDAVKGRRGA
Sbjct:  429 LDDRLAELLRFMRTGKREDVEAAWLGERRALTQDFKRKHKDAVKGRRGA 477          
BLAST of mRNA_H-canaliculatus_F_contig12953.2456.1 vs. uniprot
Match: A0A835YZR3_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.890e-8
Identity = 79/198 (39.90%), Postives = 101/198 (51.01%), Query Frame = 0
Query:    1 MSTLTDIFKVQDKVSTKKNKEEKEKDKGFKVASLFDGLAGAPPTTTARXXXXXXXXXXXXXXXXXXXXXSTVTTLSNGLEGTAAKGGTGEGPPAPETAGGVILSVGGLSSKNPGPVPSLAAAQPLTDAAASHDPAASAAVPLSETGKVLWRPLSDVVAFAARFVRTGKREDVESAWLGERRALTQDFKRKHKDAVKGR 198
            + TLTDIF VQDKV+TK + EEK +  GFK++SLF G           XXXXXXXXXXXXXXXXXX   +TV T + G      KGG  E   + +      L       +    V      +   +         +AA PL      +W  +  + A AA+F R G   ++E  WL  RR LT DFKRKHK+A+K R
Sbjct:  568 VGTLTDIFSVQDKVTTKLSAEEKARATGFKLSSLFGG-------DXXXXXXXXXXXXXXXXXXXXXAGEATVHTFAFGGIAEDGKGGD-ESKTSKQKR--TALEQAEPQQRRQQRV------EDKENVDVKRGSKGAAAAPLPPAELRIWGDMDAIRARAAQFCRQGTDAEIEERWLQSRRNLTVDFKRKHKEALKSR 749          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12953.2456.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KUQ6_9PHAE8.090e-2948.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS94_ECTSI2.680e-1483.67RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YZR3_9STRA4.890e-839.90RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12953contigH-canaliculatus_F_contig12953:1423..2067 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12953.2456.1mRNA_H-canaliculatus_F_contig12953.2456.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig12953 1005..2245 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig12953.2456.1 ID=prot_H-canaliculatus_F_contig12953.2456.1|Name=mRNA_H-canaliculatus_F_contig12953.2456.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=215bp
MSTLTDIFKVQDKVSTKKNKEEKEKDKGFKVASLFDGLAGAPPTTTARAA
AADAGAGFSFAFGGGNGPGSTVTTLSNGLEGTAAKGGTGEGPPAPETAGG
VILSVGGLSSKNPGPVPSLAAAQPLTDAAASHDPAASAAVPLSETGKVLW
RPLSDVVAFAARFVRTGKREDVESAWLGERRALTQDFKRKHKDAVKGRRG
AGAGRGAASKKRRR*
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