mRNA_H-canaliculatus_F_contig12944.2451.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12944.2451.1
Unique NamemRNA_H-canaliculatus_F_contig12944.2451.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12944.2451.1 vs. uniprot
Match: A0A6H5JPB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB4_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 4.460e-70
Identity = 109/145 (75.17%), Postives = 124/145 (85.52%), Query Frame = 1 
Query:    1 ATCDDTRHFSYWIRPGGSWHPEYLTLDHLPLVLNATEFYIRKVEESRGSKPLLDVLDLMRAGTPIEDTLFILRAWLNRKEADGVTLAAEGGPIMEFPEDGTAEEALAELSRRQSGDAETKRCLFLEGHMRRSRKRAEASRAAAAL 435
            ATC+DTRHFSYWIRPGGSWHPEYLTLDH PLV NATEFYIRKVE++RGSKPLLD LD++RAG P++  L IL+AWLNRK  DGV+L AEGGPIM FPEDGT +EA+AEL RRQS  AE++RC+FL G  RRS KRAEA  AAAA+
Sbjct:  149 ATCNDTRHFSYWIRPGGSWHPEYLTLDHFPLVYNATEFYIRKVEDARGSKPLLDTLDILRAGHPLDAALPILKAWLNRKGEDGVSLGAEGGPIMPFPEDGTVDEAMAELHRRQSEYAESRRCMFLAGIARRSGKRAEAGAAAAAI 293
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12944.2451.1 vs. uniprot
Match: D8LSR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR7_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 5.260e-70
Identity = 111/145 (76.55%), Postives = 126/145 (86.90%), Query Frame = 1 
Query:    1 ATCDDTRHFSYWIRPGGSWHPEYLTLDHLPLVLNATEFYIRKVEESRGSKPLLDVLDLMRAGTPIEDTLFILRAWLNRKEADGVTLAAEGGPIMEFPEDGTAEEALAELSRRQSGDAETKRCLFLEGHMRRSRKRAEASRAAAAL 435
            ATC+DTRHFSYWIRPGGSWHPEYLTLDH PLV NATEFYIRKVE++RGSKPLLD LD++RAG P++ TL IL+AWLNRK  DGV+L AEGGPIM FPEDGT +EA+AEL RRQS  AE++RC+FL G  RRSRKRAEA  AAAA+
Sbjct:  264 ATCNDTRHFSYWIRPGGSWHPEYLTLDHFPLVHNATEFYIRKVEDARGSKPLLDTLDILRAGHPLDATLPILKAWLNRKGEDGVSLGAEGGPIMPFPEDGTVDEAMAELYRRQSEYAESRRCMFLAGIARRSRKRAEAGAAAAAI 408
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12944.2451.1 vs. uniprot
Match: A0A6T5PXW9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PXW9_HETAK)

HSP 1 Score: 92.8 bits (229), Expect = 2.680e-19
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:    1 ATCDDTRHFSYWIRPGGSWHPEYLTLDHLPLVLNATEFYIRKVE-ESRGSKPLLDVLDLMRAGTPIEDT--LFILRAWLNRKEADGV 252
            ATCDDTRHFS+WIRPGGSWHPEYL ++HL LVL++ +F++RK + +S G   LLD LD +R G  +E    L   R W + ++  G+
Sbjct:  287 ATCDDTRHFSHWIRPGGSWHPEYLRIEHLKLVLDSGKFFLRKTDGDSAG---LLDALDALRGGRALETLGDLVYERVWEDARKEAGI 370
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12944.2451.1 vs. uniprot
Match: A0A7S2UWP2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWP2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.870e-16
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 ATCDDTRHFSYWIRPGGSWHPEYLTLDHLPLVLNATEFYIRKVEESRGSKPLLDVLDLM 177
            ATCDDTRHFS+WIRPGGSWHPEYL L HLPL+L + +F+ RK+  +  S PL+  L+++
Sbjct:  304 ATCDDTRHFSHWIRPGGSWHPEYLQLMHLPLLLKSDKFFARKISHNE-SLPLVTALNVL 361
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12944.2451.1 vs. uniprot
Match: A0A835YXC2_9STRA (Core-2/I-branching enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC2_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.420e-15
Identity = 48/132 (36.36%), Postives = 66/132 (50.00%), Query Frame = 1 
Query:    1 ATCDDTRHFSYWIRPGGSWHPEYLTLDHLPLVLNATEF-------YIRKVEESRGSKPLLDVLDLMRAGTPIEDTLFILRAWLNRKEADGVTLAAEGGPIMEFPEDGTAEEALAELSRRQSGDAETKRCLFL 375
            ATCD T H+S+WIRPG SWHPEYL L HL L+L    +       + RKV+    S  LL V+D +  G  +E  L ++  WL           A+G  + +        E L+EL+RR+    +  R  FL
Sbjct:  272 ATCDSTLHYSHWIRPGHSWHPEYLDLTHLELLLGGRPWVGRGDVLFFRKVDFGSKSAALLSVIDALNGGKSLESCLPVMLNWLR----------AQGSSLSDTS---ALSEVLSELTRRRVAHDQAVRSAFL 390
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12944.2451.1 vs. uniprot
Match: A0A4D9D7W1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7W1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.170e-13
Identity = 45/112 (40.18%), Postives = 56/112 (50.00%), Query Frame = 1 
Query:    1 ATCDDTRHFSYWIRPGGSWHPEYLTLDHLPLVLNAT--------EFYIRKVEESRGSKPLLDVLDLMRAGTPIEDTLFILRAWLNRKEADGVTLAAEGGPIMEFPEDGTAEE 312
            ATC+ T HFS+WIRPGGSWHPEYLT  HLPL+L            F+ RK +  +GS  L+  LD +R   P  D       W     A  +  A E G  +   E G  E+
Sbjct:  309 ATCNSTLHFSHWIRPGGSWHPEYLTPLHLPLLLEKIGASSPSFPAFWARKFDVGKGSSALMAALDYLRECRPARDQAAKSLEW-----APAIVFAKEMGQYIVDRELGDGED 415
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12944.2451.1 vs. uniprot
Match: A0A7S1UIP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIP0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.850e-11
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:   22 HFSYWIRPGGSWHPEYLTLDHLPLVLNATEFYIRKVEESRGSKPLLDVLDLMRAGTPIEDTLFILRAWL 228
            H++YW+RPGGSWHPEYL L HL  +L +   ++RKV+    S+  +  +D +R G  I+       AWL
Sbjct:    5 HYTYWVRPGGSWHPEYLDLRHLYDMLQSDAIFVRKVDIGGASRDFVKAVDALRTGGEIDG------AWL 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12944.2451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JPB4_9PHAE4.460e-7075.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LSR7_ECTSI5.260e-7076.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6T5PXW9_HETAK2.680e-1951.72Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UWP2_9STRA3.870e-1661.02Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YXC2_9STRA3.420e-1536.36Core-2/I-branching enzyme-domain-containing protei... [more]
A0A4D9D7W1_9STRA1.170e-1340.18Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1UIP0_9STRA4.850e-1142.03Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12944contigH-canaliculatus_F_contig12944:1328..3372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size438
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12944.2451.1prot_H-canaliculatus_F_contig12944.2451.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12944 1328..3372 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929025.3092976-CDS-H-canaliculatus_F_contig12944:1327..13701622929025.3092976-CDS-H-canaliculatus_F_contig12944:1327..1370Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12944 1328..1370 -
1696845651.7457173-CDS-H-canaliculatus_F_contig12944:1327..13701696845651.7457173-CDS-H-canaliculatus_F_contig12944:1327..1370Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12944 1328..1370 -
1622929025.3467124-CDS-H-canaliculatus_F_contig12944:2001..21751622929025.3467124-CDS-H-canaliculatus_F_contig12944:2001..2175Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12944 2002..2175 -
1696845651.7542777-CDS-H-canaliculatus_F_contig12944:2001..21751696845651.7542777-CDS-H-canaliculatus_F_contig12944:2001..2175Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12944 2002..2175 -
1622929025.3627362-CDS-H-canaliculatus_F_contig12944:2823..29511622929025.3627362-CDS-H-canaliculatus_F_contig12944:2823..2951Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12944 2824..2951 -
1696845651.7635083-CDS-H-canaliculatus_F_contig12944:2823..29511696845651.7635083-CDS-H-canaliculatus_F_contig12944:2823..2951Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12944 2824..2951 -
1622929025.3776846-CDS-H-canaliculatus_F_contig12944:3279..33721622929025.3776846-CDS-H-canaliculatus_F_contig12944:3279..3372Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12944 3280..3372 -
1696845651.7717612-CDS-H-canaliculatus_F_contig12944:3279..33721696845651.7717612-CDS-H-canaliculatus_F_contig12944:3279..3372Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12944 3280..3372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12944.2451.1

>prot_H-canaliculatus_F_contig12944.2451.1 ID=prot_H-canaliculatus_F_contig12944.2451.1|Name=mRNA_H-canaliculatus_F_contig12944.2451.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=146bp
ATCDDTRHFSYWIRPGGSWHPEYLTLDHLPLVLNATEFYIRKVEESRGSK
PLLDVLDLMRAGTPIEDTLFILRAWLNRKEADGVTLAAEGGPIMEFPEDG
TAEEALAELSRRQSGDAETKRCLFLEGHMRRSRKRAEASRAAAALA
back to top

mRNA from alignment at H-canaliculatus_F_contig12944:1328..3372-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12944.2451.1 ID=mRNA_H-canaliculatus_F_contig12944.2451.1|Name=mRNA_H-canaliculatus_F_contig12944.2451.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2045bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12944:1328..3372- (Hapterophycus canaliculatus Oshoro5f female)
GCTACGTGCGACGATACGAGGCATTTCTCGTACTGGATAAGACCAGGAGG
CAGCTGGCATCCGGAGTACCTTACGCTTGACCACCTTCCTCTGGTAAGCT
TTCTGCTGCCTGCTGCCTGCTGCCTGCTGCAGCTGCTGTCCTAGTGGTGG
CTTCCTTTTTTTGTGCGCGCTCATTTGTTTACTTGCTGGAAGAATAGAGT
TTTCCGTACGACGCGAAGTTTTTTGGTATATTCTCAGTGTGCCGTGGCAA
TGTGTGTCTCGGATCGCTGTTTCTTTCGGCGCACCTGCGCAAAGGCGCCA
AGCTGCGTATCCCCCTCGTAAGCTGATGCAAGGGCGACACATGGCCTTCG
GCACCCACGCCTCTACGGTAACTGACTCCTCGTTTTCTCTCTTCCCTGCA
TCTTTCCGCGTCCACGACAAGGTGCTCAACGCGACCGAGTTCTACATCCG
CAAGGTGGAGGAGAGCCGCGGGTCAAAGCCGCTGTTGGACGTGCTGGACT
TGATGCGGGCGGGGACTCCCATCGAGGACACACTTTTCATCTTGAGAGCG
TGAGTGCCCCTCGGCGGCGCGTTGCGACTGCCGCCGCTGTCGCCGCTTCT
GTCGCCTCCGCTGCTGTAGTGTTTGCCGGAAAGAAATCACGGCATCTGGG
GTCGGAAATCACCAGCATGTTCCACGGGGCAAGGCCCGACCGCGTGCCGA
ATCAGCTCGGTTCCATGTGTCACAAATGTGGTCAGGCCCGGTCAAGATAG
CTCACACTTTACGCTTTCTGCGGGGGAAGGACCGGGTTGGATTGGATCAT
GGGACCATGGAAGTAGGCTGCCACGCGCCGGGCATGCGGCCATGGCCTTC
GCAGCAATTTCTCGCGGGTCGGGACGGGTGACGACGAACGGAAGCGACCA
AGAAAAAAGGCCTCAAGCAGGGTACTGACCCCATCGGTGGCAACTGGCCC
GTGGAAAGCCCCGCTTTTTTTCCTCCGACGGCTGCCTGCACAAGCCACCC
GAGACCCCGCCCACCCTCTCGGCTCGCTGACGGGTGGGCCTCAAGTGCAC
CCTTGCCACCAACGCGCGCCTTGGATCCTCGACGGTGCCGTCCACCCGCC
CGCATGCCCACGGCAAGGCTCCGTGGATTTCGTTCGACCTTCGCTCCCTC
CCTCGCTGCCTCCCTCCCTCGCTGCCTCCTTCGCCTGGTTGTCGCAGGTG
GCTGAACAGGAAGGAGGCAGACGGGGTCACCCTCGCGGCAGAAGGGGGCC
CCATCATGGAGTTCCCGGAGGACGGCACGGCGGAGGAAGCCCTGGCGGAG
CTGTCGCGGAGGCAGTCCGGGGACGCGGAGACGAAGCGGTGCCTCTTCTT
GGAAGGCCACATGCGAAGAAGGTGCATCGTTGTGCGCCCCCTGCGCGCGT
GCGCCTGCCTGTTGGGCGCGTGATCTTTTTTTTTTTTTTTTCATGTTTTG
GTGTCGCCACCGGAAAACTTCGTGCCGCGAGCGGGATGTGCGATATTTGG
TGGTTTTTATCGGAGAAGACCCTCCAGTGTGTGCGAGCGGTTCGTCCCCG
AGTCTTTCGCCCCCCAAGGCTGGAGAAGGAGGAGCGGAACGGGTGGTTGT
CGGGGTTGATCGTTTTTTCTTGGGAGTACGCTGCGAGTGGACAAACGGAG
GAGCGCGGCTTGCTTTCGTGTCGGGGGTTGAAACGTGACAAGCGGTCTGT
ACGTGGGTTGCGTGTCCGTGAATCTCCGTGGATGCACGATGCACACCTGC
TCCATGCCTCTGTAGCCCTGTTGGAAGTCCCCGATGGTTGGAATCTGGGT
GCTTCCCCGGAGATCACCGGCTGACCGCTTTTTACGTGCCCGTTTATCGA
GCGTTGCCGTGCAAATCTCTCCATGCCTCGGCACCACGCGGCGTGCGTCG
TCGACCTCTTGCCAATGACACCCTTGGGGTATATGCCATATGCCTACTTT
CCTCAACACGACCCCCTGATAACCCCCCGGACGACGACAACAATAACGAC
AGTCGGAAGAGAGCGGAGGCGAGCCGGGCAGCGGCGGCACTTGCG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12944:1328..3372-

>mRNA_H-canaliculatus_F_contig12944.2451.1 ID=mRNA_H-canaliculatus_F_contig12944.2451.1|Name=mRNA_H-canaliculatus_F_contig12944.2451.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=876bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12944:1328..3372- (Hapterophycus canaliculatus Oshoro5f female)
GCTACGTGCGACGATACGAGGCATTTCTCGTACTGGATAAGACCAGGAGG
CAGCTGGCATCCGGAGTACCTTACGCTTGACCACCTTCCTCTGGCTACGT
GCGACGATACGAGGCATTTCTCGTACTGGATAAGACCAGGAGGCAGCTGG
CATCCGGAGTACCTTACGCTTGACCACCTTCCTCTGGTGCTCAACGCGAC
CGAGTTCTACATCCGCAAGGTGGAGGAGAGCCGCGGGTCAAAGCCGCTGT
TGGACGTGCTGGACTTGATGCGGGCGGGGACTCCCATCGAGGACACACTT
TTCATCTTGAGAGCGTGCTCAACGCGACCGAGTTCTACATCCGCAAGGTG
GAGGAGAGCCGCGGGTCAAAGCCGCTGTTGGACGTGCTGGACTTGATGCG
GGCGGGGACTCCCATCGAGGACACACTTTTCATCTTGAGAGCGTGGCTGA
ACAGGAAGGAGGCAGACGGGGTCACCCTCGCGGCAGAAGGGGGCCCCATC
ATGGAGTTCCCGGAGGACGGCACGGCGGAGGAAGCCCTGGCGGAGCTGTC
GCGGAGGCAGTCCGGGGACGCGGAGACGAAGCGGTGCCTCTTCTTGGAAG
GCCACATGCGAAGAAGGTGGCTGAACAGGAAGGAGGCAGACGGGGTCACC
CTCGCGGCAGAAGGGGGCCCCATCATGGAGTTCCCGGAGGACGGCACGGC
GGAGGAAGCCCTGGCGGAGCTGTCGCGGAGGCAGTCCGGGGACGCGGAGA
CGAAGCGGTGCCTCTTCTTGGAAGGCCACATGCGAAGAAGTCGGAAGAGA
GCGGAGGCGAGCCGGGCAGCGGCGGCACTTGCGTCGGAAGAGAGCGGAGG
CGAGCCGGGCAGCGGCGGCACTTGCG
back to top