mRNA_H-canaliculatus_F_contig12940.2449.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12940.2449.1
Unique NamemRNA_H-canaliculatus_F_contig12940.2449.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12940.2449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12940contigH-canaliculatus_F_contig12940:1052..2083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score60.1
Seed ortholog evalue2.4e-06
Seed eggNOG ortholog7159.AAEL002739-PA
EggNOG free text desc.C2H2-type zinc finger
EggNOG OGs39SN4@33154,3BQ0F@33208,3DFPE@33213,3SMDM@50557,422AH@6656,459MD@7147,45KIU@7148,KOG1721@1,KOG1721@2759
COG Functional cat.K
Best tax levelNematocera
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1032
Cds size1032
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929025.1626868-CDS-H-canaliculatus_F_contig12940:1051..20831622929025.1626868-CDS-H-canaliculatus_F_contig12940:1051..2083Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12940 1052..2083 +
1696845651.7043297-CDS-H-canaliculatus_F_contig12940:1051..20831696845651.7043297-CDS-H-canaliculatus_F_contig12940:1051..2083Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12940 1052..2083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12940.2449.1prot_H-canaliculatus_F_contig12940.2449.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12940 1052..2083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12940.2449.1

>prot_H-canaliculatus_F_contig12940.2449.1 ID=prot_H-canaliculatus_F_contig12940.2449.1|Name=mRNA_H-canaliculatus_F_contig12940.2449.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=344bp
GHCERLRKLRKRKNKITLDEAQRDFPCPFKDCNYKAYRADTLRTHEINEH
PYIPRFWCRICHNPFDTLQSLAVHINIEKHFACYFDGCPFTTRRLYHLER
HSRRHQNDRRFSCGTCPYKAFTASDMVVHESTHLINKPFACHVEWCKQSF
AQSNQLTMHKKTHTIEGQIRKKKQENRVNNKLKEWGFTVDCETIINAVAG
ECLKDAQRYFSRLDFRIVNCINAICILEVDEFQHYNYNLSCEASRMADVR
ASLVLAGYTLPIHWIRYSPCGKYKIGSNETKTPRPTREQVLKDHLAEVCS
PDYAPEKQERIHYLFYDLVSKSEGPEIMYDPDFPDAMKNLVSW*
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mRNA from alignment at H-canaliculatus_F_contig12940:1052..2083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12940.2449.1 ID=mRNA_H-canaliculatus_F_contig12940.2449.1|Name=mRNA_H-canaliculatus_F_contig12940.2449.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1032bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12940:1052..2083+ (Hapterophycus canaliculatus Oshoro5f female)
GGACACTGCGAAAGACTTCGAAAACTTCGAAAACGAAAGAACAAAATCAC
GCTCGACGAAGCCCAGCGTGATTTTCCATGTCCTTTCAAAGATTGTAATT
ACAAAGCATATAGGGCAGATACACTGAGGACACATGAAATAAATGAACAT
CCCTACATTCCTCGTTTTTGGTGTCGAATATGTCACAATCCTTTCGACAC
GTTACAGAGCCTCGCGGTACACATAAACATAGAGAAACATTTTGCGTGTT
ATTTCGATGGATGCCCTTTCACAACTCGTCGCCTTTACCATCTGGAACGA
CACTCGAGAAGGCATCAGAATGACAGACGGTTCTCATGTGGCACTTGTCC
GTACAAAGCTTTCACAGCGTCTGATATGGTCGTACACGAGAGCACGCATC
TGATCAACAAGCCATTTGCATGTCATGTGGAGTGGTGCAAACAGTCGTTT
GCACAATCAAATCAACTCACGATGCACAAAAAAACCCACACCATCGAGGG
TCAGATTCGCAAGAAGAAGCAGGAGAATCGGGTCAACAATAAGCTAAAGG
AATGGGGCTTCACTGTCGACTGCGAAACAATAATAAACGCCGTCGCGGGA
GAGTGTTTGAAGGACGCCCAGAGGTACTTCTCACGACTGGACTTCCGGAT
CGTCAACTGCATCAACGCCATCTGTATTCTTGAGGTAGACGAGTTTCAGC
ACTACAATTACAATTTGTCATGTGAAGCGAGCAGAATGGCGGACGTTAGG
GCATCACTAGTACTTGCTGGGTACACGCTACCAATCCACTGGATTCGCTA
CAGTCCATGTGGCAAGTATAAAATCGGGTCAAACGAGACCAAGACTCCGC
GGCCAACACGGGAACAGGTGCTGAAAGACCATCTCGCTGAAGTTTGTTCA
CCGGACTATGCACCAGAAAAGCAAGAACGCATCCACTATTTGTTTTACGA
TTTGGTGTCTAAGAGTGAAGGCCCCGAGATTATGTACGACCCGGACTTTC
CGGATGCCATGAAGAACTTGGTTTCGTGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12940:1052..2083+

>mRNA_H-canaliculatus_F_contig12940.2449.1 ID=mRNA_H-canaliculatus_F_contig12940.2449.1|Name=mRNA_H-canaliculatus_F_contig12940.2449.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2064bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12940:1052..2083+ (Hapterophycus canaliculatus Oshoro5f female)
GGACACTGCGAAAGACTTCGAAAACTTCGAAAACGAAAGAACAAAATCAC
GCTCGACGAAGCCCAGCGTGATTTTCCATGTCCTTTCAAAGATTGTAATT
ACAAAGCATATAGGGCAGATACACTGAGGACACATGAAATAAATGAACAT
CCCTACATTCCTCGTTTTTGGTGTCGAATATGTCACAATCCTTTCGACAC
GTTACAGAGCCTCGCGGTACACATAAACATAGAGAAACATTTTGCGTGTT
ATTTCGATGGATGCCCTTTCACAACTCGTCGCCTTTACCATCTGGAACGA
CACTCGAGAAGGCATCAGAATGACAGACGGTTCTCATGTGGCACTTGTCC
GTACAAAGCTTTCACAGCGTCTGATATGGTCGTACACGAGAGCACGCATC
TGATCAACAAGCCATTTGCATGTCATGTGGAGTGGTGCAAACAGTCGTTT
GCACAATCAAATCAACTCACGATGCACAAAAAAACCCACACCATCGAGGG
TCAGATTCGCAAGAAGAAGCAGGAGAATCGGGTCAACAATAAGCTAAAGG
AATGGGGCTTCACTGTCGACTGCGAAACAATAATAAACGCCGTCGCGGGA
GAGTGTTTGAAGGACGCCCAGAGGTACTTCTCACGACTGGACTTCCGGAT
CGTCAACTGCATCAACGCCATCTGTATTCTTGAGGTAGACGAGTTTCAGC
ACTACAATTACAATTTGTCATGTGAAGCGAGCAGAATGGCGGACGTTAGG
GCATCACTAGTACTTGCTGGGTACACGCTACCAATCCACTGGATTCGCTA
CAGTCCATGTGGCAAGTATAAAATCGGGTCAAACGAGACCAAGACTCCGC
GGCCAACACGGGAACAGGTGCTGAAAGACCATCTCGCTGAAGTTTGTTCA
CCGGACTATGCACCAGAAAAGCAAGAACGCATCCACTATTTGTTTTACGA
TTTGGTGTCTAAGAGTGAAGGCCCCGAGATTATGTACGACCCGGACTTTC
CGGATGCCATGAAGAACTTGGTTTCGTGGTGAGGACACTGCGAAAGACTT
CGAAAACTTCGAAAACGAAAGAACAAAATCACGCTCGACGAAGCCCAGCG
TGATTTTCCATGTCCTTTCAAAGATTGTAATTACAAAGCATATAGGGCAG
ATACACTGAGGACACATGAAATAAATGAACATCCCTACATTCCTCGTTTT
TGGTGTCGAATATGTCACAATCCTTTCGACACGTTACAGAGCCTCGCGGT
ACACATAAACATAGAGAAACATTTTGCGTGTTATTTCGATGGATGCCCTT
TCACAACTCGTCGCCTTTACCATCTGGAACGACACTCGAGAAGGCATCAG
AATGACAGACGGTTCTCATGTGGCACTTGTCCGTACAAAGCTTTCACAGC
GTCTGATATGGTCGTACACGAGAGCACGCATCTGATCAACAAGCCATTTG
CATGTCATGTGGAGTGGTGCAAACAGTCGTTTGCACAATCAAATCAACTC
ACGATGCACAAAAAAACCCACACCATCGAGGGTCAGATTCGCAAGAAGAA
GCAGGAGAATCGGGTCAACAATAAGCTAAAGGAATGGGGCTTCACTGTCG
ACTGCGAAACAATAATAAACGCCGTCGCGGGAGAGTGTTTGAAGGACGCC
CAGAGGTACTTCTCACGACTGGACTTCCGGATCGTCAACTGCATCAACGC
CATCTGTATTCTTGAGGTAGACGAGTTTCAGCACTACAATTACAATTTGT
CATGTGAAGCGAGCAGAATGGCGGACGTTAGGGCATCACTAGTACTTGCT
GGGTACACGCTACCAATCCACTGGATTCGCTACAGTCCATGTGGCAAGTA
TAAAATCGGGTCAAACGAGACCAAGACTCCGCGGCCAACACGGGAACAGG
TGCTGAAAGACCATCTCGCTGAAGTTTGTTCACCGGACTATGCACCAGAA
AAGCAAGAACGCATCCACTATTTGTTTTACGATTTGGTGTCTAAGAGTGA
AGGCCCCGAGATTATGTACGACCCGGACTTTCCGGATGCCATGAAGAACT
TGGTTTCGTGGTGA
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