mRNA_H-canaliculatus_F_contig1294.2448.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1294.2448.1
Unique NamemRNA_H-canaliculatus_F_contig1294.2448.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1294.2448.1 vs. uniprot
Match: D7FTT7_ECTSI (Aldo_ket_red domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT7_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 6.240e-49
Identity = 123/217 (56.68%), Postives = 143/217 (65.90%), Query Frame = -1 
Query:  376 QALSEILAWGSGSRSISNSNDKDGRDDRLHDPWHLYQNKLLAELQAVARKHGRGLSPADVATAFQLYRAPVTSYLTETPPGSSGIHRPGTEDPGKPEENMGNRISSASESSAAAISIPVRVNSSGSLSARRSAEADEDRVAGRRGAELAEMLDVEDVERIAAAVAEGCTTSAADLEGFALGWEQELPGGVEGGREGDEERMLQGVE-VGWEGPTIFL 1023
            QALS+ILAWG   RS  N+   DG      DPW LYQN+LL ELQAVARKHG G+SPADVATAF LYR PV  +      GSS        DPG   E         + +SAAA+S+PVRVNS+GS+SARR+AEADEDRVAGRRGAELA  LD ED++RIAAAV  G    A ++ G A+GWE E    + GG EG+EE  L   + VG EGPTIFL
Sbjct:  282 QALSDILAWG---RSNGNAR-LDG------DPWALYQNRLLPELQAVARKHGGGISPADVATAFHLYRRPVPPF------GSSRT------DPGTASETQ-------AVNSAAAVSLPVRVNSAGSVSARRAAEADEDRVAGRRGAELANALDPEDIQRIAAAVGAGSEREAIEVGG-AVGWEDEQ---LLGGAEGEEEGALWAEQGVGLEGPTIFL 465
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BLAST of mRNA_H-canaliculatus_F_contig1294.2448.1 vs. uniprot
Match: A0A6H5L0E9_9PHAE (Aldo_ket_red domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E9_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 1.030e-48
Identity = 122/217 (56.22%), Postives = 141/217 (64.98%), Query Frame = -1 
Query:  376 QALSEILAWGSGSRSISNSNDKDGRDDRLHDPWHLYQNKLLAELQAVARKHGRGLSPADVATAFQLYRAPVTSYLTETPPGSSGIHRPGTEDPGKPEENMGNRISSASESSAAAISIPVRVNSSGSLSARRSAEADEDRVAGRRGAELAEMLDVEDVERIAAAVAEGCTTSAADLEGFALGWEQELPGGVEGGREGDEERMLQGVE-VGWEGPTIFL 1023
            QALS+ILAWG   RS       +G DD   DPW LYQNKLL ELQAVARKHG G+SPADVATAF LYR PV  +      GSS        DPG   E         + +SA A+S+PVRVNS+GS+SARR+AEADEDRVAGRRGAELA+ LD ED++RIA AV  G    A  + G ALGWE E    + GG EG++E  L   + VG EGPTIFL
Sbjct:  426 QALSDILAWG---RS-------NGNDDLKGDPWALYQNKLLPELQAVARKHGGGISPADVATAFHLYRRPVPPF------GSSRT------DPGTASETQ-------AVNSAVAVSLPVRVNSAGSVSARRAAEADEDRVAGRRGAELADALDPEDIQRIATAVGAGSEREAIQVGG-ALGWEDEE---LLGGAEGEDEGALWAEQGVGLEGPTIFL 609
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1294.2448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTT7_ECTSI6.240e-4956.68Aldo_ket_red domain-containing protein n=1 Tax=Ect... [more]
A0A6H5L0E9_9PHAE1.030e-4856.22Aldo_ket_red domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1294contigH-canaliculatus_F_contig1294:25627..26649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1023
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1294.2448.1prot_H-canaliculatus_F_contig1294.2448.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1294 25764..26288 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929025.0658984-UTR-H-canaliculatus_F_contig1294:25626..257631622929025.0658984-UTR-H-canaliculatus_F_contig1294:25626..25763Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1294 25627..25763 +
1696845651.67404-UTR-H-canaliculatus_F_contig1294:25626..257631696845651.67404-UTR-H-canaliculatus_F_contig1294:25626..25763Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1294 25627..25763 +
1622929025.1099958-UTR-H-canaliculatus_F_contig1294:26288..266491622929025.1099958-UTR-H-canaliculatus_F_contig1294:26288..26649Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1294 26289..26649 +
1696845651.6930075-UTR-H-canaliculatus_F_contig1294:26288..266491696845651.6930075-UTR-H-canaliculatus_F_contig1294:26288..26649Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1294 26289..26649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929025.087709-CDS-H-canaliculatus_F_contig1294:25763..262881622929025.087709-CDS-H-canaliculatus_F_contig1294:25763..26288Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1294 25764..26288 +
1696845651.6847217-CDS-H-canaliculatus_F_contig1294:25763..262881696845651.6847217-CDS-H-canaliculatus_F_contig1294:25763..26288Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1294 25764..26288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1294.2448.1

>prot_H-canaliculatus_F_contig1294.2448.1 ID=prot_H-canaliculatus_F_contig1294.2448.1|Name=mRNA_H-canaliculatus_F_contig1294.2448.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=175bp
MLTKSRQRSHGALGPGLGADVNGTIAKRDSSHRRTAHKTFPLTITTMAER
SLDPHTRNCMQHISNGNTKWGTHTNNEYVTEKSSAPPNQPQLPATSSPRP
LPVLPLLPLAALAPNRARTLRGRQHSLCTPLQPPQRFAPRPRRRASLPIR
HPGGPPPDPRRPQPTSSRTDFQKS*
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mRNA from alignment at H-canaliculatus_F_contig1294:25627..26649+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1294.2448.1 ID=mRNA_H-canaliculatus_F_contig1294.2448.1|Name=mRNA_H-canaliculatus_F_contig1294.2448.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1023bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1294:25627..26649+ (Hapterophycus canaliculatus Oshoro5f female)
TCAGTTTTCACGGGTGCAGAACGCAGACTACCAAGAAGAGCGCACGTTCG
TTCTACGTAAGAGTGCAGATAGTTTCACGTACGTTCCACAGCTTCGAGCG
ATGCAGTCGTGTATGGCGTGTAATCGTTGGTGGGCACATGTTAACGAAAT
CAAGACAACGTTCGCATGGAGCACTGGGCCCCGGCCTTGGCGCTGACGTG
AACGGAACCATCGCCAAGCGTGATTCGAGCCACCGCCGTACTGCACACAA
GACATTTCCACTGACAATAACCACGATGGCAGAACGCTCCTTGGACCCCC
ACACTCGCAATTGCATGCAACACATCTCAAATGGAAACACAAAATGGGGG
ACCCACACAAATAACGAATACGTCACAGAAAAATCGTCGGCCCCTCCCAA
CCAACCTCAACTCCCTGCAACATCCTCTCCTCGTCCCCTTCCCGTCCTCC
CTCTACTCCCCCTGGCAGCTCTTGCTCCCAACCGAGCGCGAACCCTTCGA
GGTCGGCAGCACTCGTTGTGCACCCCTCTGCAACCGCCGCAGCGATTCGC
TCCACGTCCTCGACGTCGAGCATCTCTGCCAATTCGGCACCCCGGCGGCC
CGCCACCCGATCCTCGTCGGCCTCAGCCGACCTCCTCGCGGACAGACTTC
CAGAAGAGTTGACCCGAACTGGTATCGAAATCGCCGCAGCTGAACTTTCT
GAAGCGCTACTGATGCGGTTTCCCATGTTTTCTTCTGGTTTTCCGGGGTC
TTCCGTTCCGGGCCGATGGATTCCGGAGGAGCCGGGTGGTGTTTCCGTCA
AATAAGATGTGACGGGTGCTCTGTACAGCTGGAAGGCTGTCGCGACGTCC
GCCGGGGATAGGCCCCGGCCATGCTTGCGAGCGACAGCTTGCAGCTCCGC
GAGAAGCTTGTTCTGGTAAAGGTGCCACGGATCATGAAGGCGGTCGTCTC
TGCCGTCCTTATCGTTGCTGTTGCTGATGCTCCTGCTACCGCTACCCCAC
GCGAGAATTTCCGACAGAGCCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1294:25627..26649+

>mRNA_H-canaliculatus_F_contig1294.2448.1 ID=mRNA_H-canaliculatus_F_contig1294.2448.1|Name=mRNA_H-canaliculatus_F_contig1294.2448.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1050bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1294:25627..26649+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTAACGAAATCAAGACAACGTTCGCATGGAGCACTGGGCCCCGGCCT
TGGCGCTGACGTGAACGGAACCATCGCCAAGCGTGATTCGAGCCACCGCC
GTACTGCACACAAGACATTTCCACTGACAATAACCACGATGGCAGAACGC
TCCTTGGACCCCCACACTCGCAATTGCATGCAACACATCTCAAATGGAAA
CACAAAATGGGGGACCCACACAAATAACGAATACGTCACAGAAAAATCGT
CGGCCCCTCCCAACCAACCTCAACTCCCTGCAACATCCTCTCCTCGTCCC
CTTCCCGTCCTCCCTCTACTCCCCCTGGCAGCTCTTGCTCCCAACCGAGC
GCGAACCCTTCGAGGTCGGCAGCACTCGTTGTGCACCCCTCTGCAACCGC
CGCAGCGATTCGCTCCACGTCCTCGACGTCGAGCATCTCTGCCAATTCGG
CACCCCGGCGGCCCGCCACCCGATCCTCGTCGGCCTCAGCCGACCTCCTC
GCGGACAGACTTCCAGAAGAGTTGAATGTTAACGAAATCAAGACAACGTT
CGCATGGAGCACTGGGCCCCGGCCTTGGCGCTGACGTGAACGGAACCATC
GCCAAGCGTGATTCGAGCCACCGCCGTACTGCACACAAGACATTTCCACT
GACAATAACCACGATGGCAGAACGCTCCTTGGACCCCCACACTCGCAATT
GCATGCAACACATCTCAAATGGAAACACAAAATGGGGGACCCACACAAAT
AACGAATACGTCACAGAAAAATCGTCGGCCCCTCCCAACCAACCTCAACT
CCCTGCAACATCCTCTCCTCGTCCCCTTCCCGTCCTCCCTCTACTCCCCC
TGGCAGCTCTTGCTCCCAACCGAGCGCGAACCCTTCGAGGTCGGCAGCAC
TCGTTGTGCACCCCTCTGCAACCGCCGCAGCGATTCGCTCCACGTCCTCG
ACGTCGAGCATCTCTGCCAATTCGGCACCCCGGCGGCCCGCCACCCGATC
CTCGTCGGCCTCAGCCGACCTCCTCGCGGACAGACTTCCAGAAGAGTTGA
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