mRNA_H-canaliculatus_F_contig12935.2444.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12935.2444.1
Unique NamemRNA_H-canaliculatus_F_contig12935.2444.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12935.2444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12935contigH-canaliculatus_F_contig12935:2704..3281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size580
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929024.1326864-CDS-H-canaliculatus_F_contig12935:2703..30181622929024.1326864-CDS-H-canaliculatus_F_contig12935:2703..3018Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12935 2704..3018 +
1696845651.5043716-CDS-H-canaliculatus_F_contig12935:2703..30181696845651.5043716-CDS-H-canaliculatus_F_contig12935:2703..3018Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12935 2704..3018 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929024.1499724-UTR-H-canaliculatus_F_contig12935:3018..32811622929024.1499724-UTR-H-canaliculatus_F_contig12935:3018..3281Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12935 3019..3281 +
1696845651.5127995-UTR-H-canaliculatus_F_contig12935:3018..32811696845651.5127995-UTR-H-canaliculatus_F_contig12935:3018..3281Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12935 3019..3281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12935.2444.1prot_H-canaliculatus_F_contig12935.2444.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12935 2704..3018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12935.2444.1

>prot_H-canaliculatus_F_contig12935.2444.1 ID=prot_H-canaliculatus_F_contig12935.2444.1|Name=mRNA_H-canaliculatus_F_contig12935.2444.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=105bp
SCSSCLSFSPALLLLRTPPPPLSLPLPLPLPLPPRRSPLSTTTPPRSEAA
AAAAAAAASAASATISPDKRWSSSSSSSESSRSIITSGDSDENPAAPARG
GGGG*
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mRNA from alignment at H-canaliculatus_F_contig12935:2704..3281+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12935.2444.1 ID=mRNA_H-canaliculatus_F_contig12935.2444.1|Name=mRNA_H-canaliculatus_F_contig12935.2444.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=578bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12935:2704..3281+ (Hapterophycus canaliculatus Oshoro5f female)
TCCTGCTCCTCGTGCCTCTCGTTTTCGCCTGCGCTACTACTGTTGAGGAC
TCCACCACCGCCACTGTCGCTGCCGCTGCCGCTGCCGCTACCGCTGCCGC
CGCGGCGATCACCGCTCTCTACAACTACCCCGCCCCGCTCTGAAGCCGCC
GCCGCCGCCGCCGCTGCTGCTGCTTCTGCCGCCTCTGCCACTATCTCCCC
TGACAAGAGGTGGTCGTCATCGTCGTCGTCGTCAGAATCCTCGAGATCTA
TTATTACCAGCGGCGACAGCGACGAGAATCCTGCCGCTCCTGCCCGCGGC
GGTGGTGGCGGCTGATGACGAGGAGCTGACGGCGAAAATTGCCGTTCCGT
CGAACCGGTCGCCGATGTTGGTGGCGTCGGCATCACCGAGGTATCCATCG
CTGCGTGGGCCAAGCCGCTGCGGTTGCCGAGCACCATGTCCTCCGCTCCG
CCGCCGCCTTCCGTTCCCGGACGAAGCGAAACCTGAGGAGAAGCCATTTT
CTCGTTTCGGGCGTTGCGTAATCTGGTCTGGACTGCTACACGCGAATCTT
GGAACCTTTCTTAGCTTCCAGTCCTGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12935:2704..3281+

>mRNA_H-canaliculatus_F_contig12935.2444.1 ID=mRNA_H-canaliculatus_F_contig12935.2444.1|Name=mRNA_H-canaliculatus_F_contig12935.2444.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=630bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12935:2704..3281+ (Hapterophycus canaliculatus Oshoro5f female)
TCCTGCTCCTCGTGCCTCTCGTTTTCGCCTGCGCTACTACTGTTGAGGAC
TCCACCACCGCCACTGTCGCTGCCGCTGCCGCTGCCGCTACCGCTGCCGC
CGCGGCGATCACCGCTCTCTACAACTACCCCGCCCCGCTCTGAAGCCGCC
GCCGCCGCCGCCGCTGCTGCTGCTTCTGCCGCCTCTGCCACTATCTCCCC
TGACAAGAGGTGGTCGTCATCGTCGTCGTCGTCAGAATCCTCGAGATCTA
TTATTACCAGCGGCGACAGCGACGAGAATCCTGCCGCTCCTGCCCGCGGC
GGTGGTGGCGGCTGATCCTGCTCCTCGTGCCTCTCGTTTTCGCCTGCGCT
ACTACTGTTGAGGACTCCACCACCGCCACTGTCGCTGCCGCTGCCGCTGC
CGCTACCGCTGCCGCCGCGGCGATCACCGCTCTCTACAACTACCCCGCCC
CGCTCTGAAGCCGCCGCCGCCGCCGCCGCTGCTGCTGCTTCTGCCGCCTC
TGCCACTATCTCCCCTGACAAGAGGTGGTCGTCATCGTCGTCGTCGTCAG
AATCCTCGAGATCTATTATTACCAGCGGCGACAGCGACGAGAATCCTGCC
GCTCCTGCCCGCGGCGGTGGTGGCGGCTGA
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