mRNA_H-canaliculatus_F_contig12931.2443.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12931.2443.1
Unique NamemRNA_H-canaliculatus_F_contig12931.2443.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12931.2443.1 vs. uniprot
Match: A0A6H5KD93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD93_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.480e-34
Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    1 RFCQDCKYNVVQAHDILMGKIDLEGSENEEEYDEDIFLPFEDRVFEGESGNSEDKVLICDVLDVEDLIYSHE 216
            +FC DCKYNVVQAHDILMGKI LEGS+NEEEYDE+IFLP EDRVFEGESG SEDK+LICDV+DVEDLIY HE
Sbjct:  181 KFCPDCKYNVVQAHDILMGKIGLEGSDNEEEYDEEIFLPIEDRVFEGESGTSEDKMLICDVMDVEDLIYFHE 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12931.2443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KD93_9PHAE2.480e-3486.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12931contigH-canaliculatus_F_contig12931:2486..3368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929024.066374-CDS-H-canaliculatus_F_contig12931:2485..25991622929024.066374-CDS-H-canaliculatus_F_contig12931:2485..2599Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12931 2486..2599 -
1696845651.4855144-CDS-H-canaliculatus_F_contig12931:2485..25991696845651.4855144-CDS-H-canaliculatus_F_contig12931:2485..2599Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12931 2486..2599 -
1622929024.0861397-CDS-H-canaliculatus_F_contig12931:3266..33681622929024.0861397-CDS-H-canaliculatus_F_contig12931:3266..3368Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12931 3267..3368 -
1696845651.494011-CDS-H-canaliculatus_F_contig12931:3266..33681696845651.494011-CDS-H-canaliculatus_F_contig12931:3266..3368Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12931 3267..3368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12931.2443.1prot_H-canaliculatus_F_contig12931.2443.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12931 2486..3368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12931.2443.1

>prot_H-canaliculatus_F_contig12931.2443.1 ID=prot_H-canaliculatus_F_contig12931.2443.1|Name=mRNA_H-canaliculatus_F_contig12931.2443.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=72bp
RFCQDCKYNVVQAHDILMGKIDLEGSENEEEYDEDIFLPFEDRVFEGESG
NSEDKVLICDVLDVEDLIYSHE
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mRNA from alignment at H-canaliculatus_F_contig12931:2486..3368-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12931.2443.1 ID=mRNA_H-canaliculatus_F_contig12931.2443.1|Name=mRNA_H-canaliculatus_F_contig12931.2443.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=883bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12931:2486..3368- (Hapterophycus canaliculatus Oshoro5f female)
AGGTTCTGCCAGGACTGCAAGTACAACGTGGTACAGGCTCACGACATCCT
AATGGGCAAGATTGACCTCGAGGGCTCGGAAAACGAGGAGGAGTACGACG
AGGTAAAACGAAATCTATCCCCAACTTTCCTTCAAGATTTGTTGCCGCGC
TTCGCCTGAAATCGAAGAAGGAGCACGACTCGACCCGGCCGAATGATGAT
GGCTGGAAGAAGCCTTGCATCGTTGGGCGAAGTGTTCAGCTTGTATTGCC
AAGTTATCTCCCGTCGCGGTCTTGGGTGTGTGCGCATGGAGCTTGCGAAA
TTTGGCCCTCCAGTTGCGAAAGGGTGTTGTCGGAGTGCTCGCAGAAGCCA
TGATCGCTCCCGCGGAGAGTGCTCATTGTGAGGGAGGGTGGGGCACTGAG
TGCTGCGTCGGCGGGAGGGGTAAGCCCACGGCCACTCCCAAGCGCCGCCC
TAGAGTAGTTATGCCGTACCGTTGTAGCGTGGACGTACTTGTATTCCTTC
CGGAATGTTGTCACGACGGGCGTGCGTCCGTCAACGTTCCCCTCCCTTCG
CCGTGCAAGAACCTTTCGCAAGCGAAATCGTGCTTGCCGGCAGAGCGTTC
AGCGCTTGCGTCGACCCCTGGAACAGGATGCCAGCTCGCCTCAGGGTGAT
TATACTGGGTGGTTAAACTATTAATACGAAGTAGCACGAGTAGCCAATAC
CGACACAGGAGTGTGTAACGAAGGCCGCCCCAATTTCTGCCACTCCTCCT
CGGAATTCGTCCCGCCCAGGATATCTTCCTTCCTTTTGAGGACCGCGTGT
TCGAAGGGGAGAGCGGCAACTCGGAGGACAAGGTCCTCATCTGCGACGTG
CTGGACGTGGAAGACCTTATCTACTCTCACGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12931:2486..3368-

>mRNA_H-canaliculatus_F_contig12931.2443.1 ID=mRNA_H-canaliculatus_F_contig12931.2443.1|Name=mRNA_H-canaliculatus_F_contig12931.2443.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=432bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12931:2486..3368- (Hapterophycus canaliculatus Oshoro5f female)
AGGTTCTGCCAGGACTGCAAGTACAACGTGGTACAGGCTCACGACATCCT
AATGGGCAAGATTGACCTCGAGGGCTCGGAAAACGAGGAGGAGTACGACG
AGAGGTTCTGCCAGGACTGCAAGTACAACGTGGTACAGGCTCACGACATC
CTAATGGGCAAGATTGACCTCGAGGGCTCGGAAAACGAGGAGGAGTACGA
CGAGGATATCTTCCTTCCTTTTGAGGACCGCGTGTTCGAAGGGGAGAGCG
GCAACTCGGAGGACAAGGTCCTCATCTGCGACGTGCTGGACGTGGAAGAC
CTTATCTACTCTCACGAGGATATCTTCCTTCCTTTTGAGGACCGCGTGTT
CGAAGGGGAGAGCGGCAACTCGGAGGACAAGGTCCTCATCTGCGACGTGC
TGGACGTGGAAGACCTTATCTACTCTCACGAG
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