mRNA_H-canaliculatus_F_contig1293.2439.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1293.2439.1
Unique NamemRNA_H-canaliculatus_F_contig1293.2439.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1293.2439.1 vs. uniprot
Match: D8LFW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW7_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 3.700e-9
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 1 
Query: 1120 PELTIPEPDELDQTEPGGGXXXXXXXXXXGKGEWVHFYNRDGEKWWRNTVTDERLKYNP 1296
            P +  PE D LD  EPGGG          G G WVH+YNRDG+KWWRNTVT +RL ++P
Sbjct:  222 PAMLPPETDMLDVKEPGGGGGDL------GGGPWVHYYNRDGDKWWRNTVTGQRLNHDP 274
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BLAST of mRNA_H-canaliculatus_F_contig1293.2439.1 vs. uniprot
Match: A0A6H5JT46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT46_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 7.300e-8
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 1 
Query: 1120 PELTIPEPDELDQTEPGGGXXXXXXXXXXGKGEWVHFYNRDGEKWWRNTVTDERLKYNP 1296
            P +  PE D LD  EPGGG          G   WVH+YNRDG+KWWRNTVT +RL ++P
Sbjct:  377 PAMLPPEADMLDVKEPGGGGGDL------GGRHWVHYYNRDGDKWWRNTVTGQRLNHDP 429
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1293.2439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFW7_ECTSI3.700e-954.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT46_9PHAE7.300e-852.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1293contigH-canaliculatus_F_contig1293:675..2111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_005230.1
Exons2
Model size1305
Cds size1305
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929023.6370556-CDS-H-canaliculatus_F_contig1293:674..16771622929023.6370556-CDS-H-canaliculatus_F_contig1293:674..1677Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1293 675..1677 +
1696845651.328111-CDS-H-canaliculatus_F_contig1293:674..16771696845651.328111-CDS-H-canaliculatus_F_contig1293:674..1677Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1293 675..1677 +
1622929023.6526055-CDS-H-canaliculatus_F_contig1293:1809..21111622929023.6526055-CDS-H-canaliculatus_F_contig1293:1809..2111Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1293 1810..2111 +
1696845651.3361778-CDS-H-canaliculatus_F_contig1293:1809..21111696845651.3361778-CDS-H-canaliculatus_F_contig1293:1809..2111Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1293 1810..2111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1293.2439.1prot_H-canaliculatus_F_contig1293.2439.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1293 675..2111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1293.2439.1

>prot_H-canaliculatus_F_contig1293.2439.1 ID=prot_H-canaliculatus_F_contig1293.2439.1|Name=mRNA_H-canaliculatus_F_contig1293.2439.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=435bp
HNPVTNEWTYGGSSVGQPQMMGYDYASPASPGVMYAWPGATPGMMPLYPQ
SPQQHAGSYIYGGAAPGMMMPDVPFGVDPAQQQQMMYMQQVQQMQQMQQQ
QQQQQEMMMAGYQPGYDDASGGGMFGGPAYMAAAAGAGAAAGAGFAGMAG
GFVPTMPDPNGPDAHLLVGALRSKDGTKPYPKSHKARGSVSGAMPFDPTS
MAPAWMGGAAAGVASGTAGAAVVGDAVAAEGGAAAVGAGVPGGFPGFFGG
VVPNSFMPNGFMPNGFMPDGMAVPAGLAGKKEGKKSKDKKKDEGEKESEK
KEGDGGGDGDGDGGGDGGGDGGGEGGGDGGREGGDGEDDGDGEDIVKEVV
DASAAAAAAASGIAASVARSAHSPELTIPEPDELDQTEPGGGGGEGADGS
GGGKGEWVHFYNRDGEKWWRNTVTDERLKYNPSK*
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mRNA from alignment at H-canaliculatus_F_contig1293:675..2111+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1293.2439.1 ID=mRNA_H-canaliculatus_F_contig1293.2439.1|Name=mRNA_H-canaliculatus_F_contig1293.2439.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1437bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1293:675..2111+ (Hapterophycus canaliculatus Oshoro5f female)
CACAACCCAGTGACGAACGAGTGGACGTACGGTGGCAGCAGCGTTGGCCA
GCCGCAGATGATGGGCTACGATTACGCCAGCCCGGCCTCTCCAGGTGTGA
TGTATGCCTGGCCGGGAGCGACACCAGGGATGATGCCCTTGTATCCCCAG
TCACCGCAGCAGCACGCGGGGTCGTATATCTACGGCGGCGCGGCTCCGGG
CATGATGATGCCCGACGTTCCGTTCGGCGTAGATCCGGCACAGCAGCAGC
AGATGATGTACATGCAGCAGGTGCAGCAGATGCAACAGATGCAGCAGCAG
CAGCAGCAGCAGCAGGAGATGATGATGGCGGGGTATCAGCCCGGCTACGA
CGACGCCAGCGGCGGCGGCATGTTCGGGGGGCCGGCGTACATGGCGGCTG
CGGCCGGCGCTGGAGCCGCCGCCGGCGCAGGTTTCGCTGGTATGGCCGGC
GGCTTTGTTCCCACAATGCCCGACCCCAACGGACCGGACGCGCATCTACT
AGTCGGCGCCCTCAGGTCCAAGGACGGTACCAAACCGTATCCCAAAAGCC
ACAAAGCCCGCGGATCCGTCTCAGGAGCGATGCCGTTCGATCCGACGTCG
ATGGCGCCGGCTTGGATGGGCGGTGCAGCGGCAGGGGTGGCGAGCGGCAC
GGCAGGAGCGGCGGTGGTCGGGGACGCCGTGGCAGCGGAGGGAGGGGCCG
CCGCCGTCGGCGCGGGTGTGCCGGGAGGGTTTCCAGGCTTCTTCGGGGGC
GTGGTGCCCAACAGCTTCATGCCCAACGGCTTTATGCCCAACGGCTTCAT
GCCCGACGGGATGGCGGTGCCCGCCGGCCTTGCGGGGAAGAAGGAGGGGA
AGAAGTCGAAGGACAAGAAGAAGGACGAGGGCGAGAAAGAGTCCGAAAAA
AAGGAGGGGGACGGCGGGGGGGACGGCGACGGTGACGGCGGGGGGGACGG
CGGGGGGGACGGTGGGGGGGAAGGCGGGGGGGACGGCGGGCGGGAAGGCG
GGGGTGACGGCGAGGAGGGAGAGCGCAGCGAGTCGACGTCGCCGCCCACG
GTGATCGCCGACGGCGGCAGCAGCAGCGGGAACGAAGCTGCTGCTACTGC
TGCTGCTGCCGACGCTCCCACGAGCAGCGACGAAGACGGCGAGGACGACG
GCGACGGCGAGGATATCGTCAAGGAAGTCGTGGATGCTTCGGCTGCCGCA
GCCGCTGCAGCGTCGGGCATCGCCGCTTCCGTGGCCCGCTCCGCGCACAG
CCCGGAGCTCACCATCCCCGAGCCGGACGAGCTCGACCAAACAGAACCTG
GCGGGGGTGGTGGCGAGGGCGCCGACGGAAGCGGCGGCGGGAAGGGTGAG
TGGGTGCACTTCTACAACAGAGACGGTGAAAAGTGGTGGCGCAATACTGT
CACAGATGAACGGCTCAAGTACAACCCGAGCAAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1293:675..2111+

>mRNA_H-canaliculatus_F_contig1293.2439.1 ID=mRNA_H-canaliculatus_F_contig1293.2439.1|Name=mRNA_H-canaliculatus_F_contig1293.2439.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2610bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1293:675..2111+ (Hapterophycus canaliculatus Oshoro5f female)
CACAACCCAGTGACGAACGAGTGGACGTACGGTGGCAGCAGCGTTGGCCA
GCCGCAGATGATGGGCTACGATTACGCCAGCCCGGCCTCTCCAGGTGTGA
TGTATGCCTGGCCGGGAGCGACACCAGGGATGATGCCCTTGTATCCCCAG
TCACCGCAGCAGCACGCGGGGTCGTATATCTACGGCGGCGCGGCTCCGGG
CATGATGATGCCCGACGTTCCGTTCGGCGTAGATCCGGCACAGCAGCAGC
AGATGATGTACATGCAGCAGGTGCAGCAGATGCAACAGATGCAGCAGCAG
CAGCAGCAGCAGCAGGAGATGATGATGGCGGGGTATCAGCCCGGCTACGA
CGACGCCAGCGGCGGCGGCATGTTCGGGGGGCCGGCGTACATGGCGGCTG
CGGCCGGCGCTGGAGCCGCCGCCGGCGCAGGTTTCGCTGGTATGGCCGGC
GGCTTTGTTCCCACAATGCCCGACCCCAACGGACCGGACGCGCATCTACT
AGTCGGCGCCCTCAGGTCCAAGGACGGTACCAAACCGTATCCCAAAAGCC
ACAAAGCCCGCGGATCCGTCTCAGGAGCGATGCCGTTCGATCCGACGTCG
ATGGCGCCGGCTTGGATGGGCGGTGCAGCGGCAGGGGTGGCGAGCGGCAC
GGCAGGAGCGGCGGTGGTCGGGGACGCCGTGGCAGCGGAGGGAGGGGCCG
CCGCCGTCGGCGCGGGTGTGCCGGGAGGGTTTCCAGGCTTCTTCGGGGGC
GTGGTGCCCAACAGCTTCATGCCCAACGGCTTTATGCCCAACGGCTTCAT
GCCCGACGGGATGGCGGTGCCCGCCGGCCTTGCGGGGAAGAAGGAGGGGA
AGAAGTCGAAGGACAAGAAGAAGGACGAGGGCGAGAAAGAGTCCGAAAAA
AAGGAGGGGGACGGCGGGGGGGACGGCGACGGTGACGGCGGGGGGGACGG
CGGGGGGGACGGTGGGGGGGAAGGCGGGGGGGACGGCGGGCGGGAAGGCG
GGGCACAACCCAGTGACGAACGAGTGGACGTACGGTGGCAGCAGCGTTGG
CCAGCCGCAGATGATGGGCTACGATTACGCCAGCCCGGCCTCTCCAGGTG
TGATGTATGCCTGGCCGGGAGCGACACCAGGGATGATGCCCTTGTATCCC
CAGTCACCGCAGCAGCACGCGGGGTCGTATATCTACGGCGGCGCGGCTCC
GGGCATGATGATGCCCGACGTTCCGTTCGGCGTAGATCCGGCACAGCAGC
AGCAGATGATGTACATGCAGCAGGTGCAGCAGATGCAACAGATGCAGCAG
CAGCAGCAGCAGCAGCAGGAGATGATGATGGCGGGGTATCAGCCCGGCTA
CGACGACGCCAGCGGCGGCGGCATGTTCGGGGGGCCGGCGTACATGGCGG
CTGCGGCCGGCGCTGGAGCCGCCGCCGGCGCAGGTTTCGCTGGTATGGCC
GGCGGCTTTGTTCCCACAATGCCCGACCCCAACGGACCGGACGCGCATCT
ACTAGTCGGCGCCCTCAGGTCCAAGGACGGTACCAAACCGTATCCCAAAA
GCCACAAAGCCCGCGGATCCGTCTCAGGAGCGATGCCGTTCGATCCGACG
TCGATGGCGCCGGCTTGGATGGGCGGTGCAGCGGCAGGGGTGGCGAGCGG
CACGGCAGGAGCGGCGGTGGTCGGGGACGCCGTGGCAGCGGAGGGAGGGG
CCGCCGCCGTCGGCGCGGGTGTGCCGGGAGGGTTTCCAGGCTTCTTCGGG
GGCGTGGTGCCCAACAGCTTCATGCCCAACGGCTTTATGCCCAACGGCTT
CATGCCCGACGGGATGGCGGTGCCCGCCGGCCTTGCGGGGAAGAAGGAGG
GGAAGAAGTCGAAGGACAAGAAGAAGGACGAGGGCGAGAAAGAGTCCGAA
AAAAAGGAGGGGGACGGCGGGGGGGACGGCGACGGTGACGGCGGGGGGGA
CGGCGGGGGGGACGGTGGGGGGGAAGGCGGGGGGGACGGCGGGCGGGAAG
GCGGGGACGGCGAGGACGACGGCGACGGCGAGGATATCGTCAAGGAAGTC
GTGGATGCTTCGGCTGCCGCAGCCGCTGCAGCGTCGGGCATCGCCGCTTC
CGTGGCCCGCTCCGCGCACAGCCCGGAGCTCACCATCCCCGAGCCGGACG
AGCTCGACCAAACAGAACCTGGCGGGGGTGGTGGCGAGGGCGCCGACGGA
AGCGGCGGCGGGAAGGGTGAGTGGGTGCACTTCTACAACAGAGACGGTGA
AAAGTGGTGGCGCAATACTGTCACAGATGAACGGCTCAAGTACAACCCGA
GCAAGTGAACGGCGAGGACGACGGCGACGGCGAGGATATCGTCAAGGAAG
TCGTGGATGCTTCGGCTGCCGCAGCCGCTGCAGCGTCGGGCATCGCCGCT
TCCGTGGCCCGCTCCGCGCACAGCCCGGAGCTCACCATCCCCGAGCCGGA
CGAGCTCGACCAAACAGAACCTGGCGGGGGTGGTGGCGAGGGCGCCGACG
GAAGCGGCGGCGGGAAGGGTGAGTGGGTGCACTTCTACAACAGAGACGGT
GAAAAGTGGTGGCGCAATACTGTCACAGATGAACGGCTCAAGTACAACCC
GAGCAAGTGA
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