mRNA_H-canaliculatus_F_contig12925.2438.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12925.2438.1
Unique NamemRNA_H-canaliculatus_F_contig12925.2438.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12925.2438.1 vs. uniprot
Match: D8LM08_ECTSI (SPX domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM08_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 5.640e-5
Identity = 22/31 (70.97%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:  268 AYGKIKRMLKRYHFVKMGRQQGEEDAELLFA 360
            AYGK+KRM+ RY+FV+M R++GEEDAEL FA
Sbjct:   21 AYGKMKRMINRYNFVRMERREGEEDAELQFA 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12925.2438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM08_ECTSI5.640e-570.97SPX domain-containing protein (Fragment) n=2 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12925contigH-canaliculatus_F_contig12925:1085..3357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size362
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12925.2438.1prot_H-canaliculatus_F_contig12925.2438.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12925 1085..3271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929023.5311484-CDS-H-canaliculatus_F_contig12925:1084..11791622929023.5311484-CDS-H-canaliculatus_F_contig12925:1084..1179Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12925 1085..1179 -
1696845651.2918-CDS-H-canaliculatus_F_contig12925:1084..11791696845651.2918-CDS-H-canaliculatus_F_contig12925:1084..1179Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12925 1085..1179 -
1622929023.5741668-CDS-H-canaliculatus_F_contig12925:3090..32711622929023.5741668-CDS-H-canaliculatus_F_contig12925:3090..3271Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12925 3091..3271 -
1696845651.3018165-CDS-H-canaliculatus_F_contig12925:3090..32711696845651.3018165-CDS-H-canaliculatus_F_contig12925:3090..3271Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12925 3091..3271 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929023.590724-UTR-H-canaliculatus_F_contig12925:3271..33571622929023.590724-UTR-H-canaliculatus_F_contig12925:3271..3357Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12925 3272..3357 -
1696845651.3123422-UTR-H-canaliculatus_F_contig12925:3271..33571696845651.3123422-UTR-H-canaliculatus_F_contig12925:3271..3357Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12925 3272..3357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12925.2438.1

>prot_H-canaliculatus_F_contig12925.2438.1 ID=prot_H-canaliculatus_F_contig12925.2438.1|Name=mRNA_H-canaliculatus_F_contig12925.2438.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=92bp
MTTSSMHSPGVYPMRTHGTLSHAYHLASCNPGLQKITVSATTGSPLQVFR
TKSSFAYRKSRVRQDQADAEAVPFRQDGAAAGGRGRRAPVR*
back to top

mRNA from alignment at H-canaliculatus_F_contig12925:1085..3357-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12925.2438.1 ID=mRNA_H-canaliculatus_F_contig12925.2438.1|Name=mRNA_H-canaliculatus_F_contig12925.2438.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2273bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12925:1085..3357- (Hapterophycus canaliculatus Oshoro5f female)
TGTATTTCTGTATTTCTCGTTCGTCGCCTCAGTCGTCGCGCTTTGCGCTT
GTGTAGGAAAGGTGCACGCACACCGGAGAAAGATGCATGACCACATCTTC
AATGCACTCGCCGGGGGTGTATCCCATGCGCACCCACGGCACGCTCAGTC
ACGCATATCACTTGGCGTCGTGCAATCCTGGTCTCCAGAAGATCACGGTC
AGTGCTACCACTGGATCCCCCCTACAAGTGTTCCGGACCAAATCCAGCTT
CGCATATCGGAAATCCCGCGAGTATCATTCCGTCGTACTCCAAACGACGC
TACTGCCAAGGCTTGTGCGGTACCATCTGTTTCCAAGCTTACGGCGGAAA
ATAAACTCGAAGCGCGCACAACGGCGCTCCACGGTGTGGAAGCGCGACCG
GCGGTATCAAATGGAATCCACGCACAGTAACAGCGCAGCAAGCCGCTCGT
TCCCATTCCAAAACCGCAACACCCCGGAAACGCGCAGTTTCTTAATTGTG
CTCGGCTTGATTACCAACCAAAGGGTGCTTACTTAAGGCTTCAAATCCAG
CATGCGGTTTTCTAATTTACCGTTTCTCAACCCAAGCGACACCGACGGAA
GTCGCGCGGCGTAGGGCCGTAGAAAAAAGCTGTTACGATTAAGATTCCTG
GAGAGCCCCTACCTGTACCTGTGCAATCCGGTTACCGTAATACATATCCG
GACTGTTCCGACGGAGAAGTACGGTTGCCGTCTACTATGCACTTTTCGTG
CGTTGATCAAGGCGATCGACACCATCTACATGTTCCCTCCTAAATTTTAC
GCACAAACGAACACCCCCGCAAATCGCCCTGATGGACGTCGCTCAAAAGC
ACGGCATGAAGAACGCGGCCGCCATCAGCCAGCGACTGTGGTAGCACCTC
AGGCAGATAGATAAGGCGTTAGTCTTCGCCACTACCACTGTTGCGGTGAT
AGAGATGGTCAGAGGGCTTCGAGACCCGCCGGTCGCCTGCCTGGCATCGA
TTTCAGCATGGTTTGTTTCTTTCCGTTCGCTCGTGTTGAGATGCGGCAAC
CGCCGGCACAGACAAAGACGTTATGTACGCTCGGGCGGGGTTTGTCCTGC
TCGATGACCACGCACGATTATAGTTGATTAAATCTTATCCTAAGGCGGTG
CGAAATGGGTATGTGTGTGGGCGCAGCAGTTTACATGGCGTGCAAAGAAA
GAGCGTGCGTGAAATTTCCAAATCTCCTGGAAACGTCTCGTTGTTTTTTT
CACGGTTTGATGAGCGAATGTTGGCCTATATTGTACGGCTGTAGCACCGC
CGTGCGAACGTCCGTTCCCGCGAGTGCCTGGTACGGAACATGCTGACGGA
AGCACCTCCAGAGCTGCACCTGTCGGAAATCCATCCGGACTCGTGCGCCC
GTCCCATGCCATCTCTCAGGGCTCGCACGAGTCGTTGTGCTTCATGTGTG
TGTGTGTGTGTGTGCGTGCGTGTGTCTCCTCCCACAGCAGCAGCGTGTGC
TACTCTGTGGCCTCCTCGAAGCCGCCGTTCCTTGCCGAGCCCGGTGGACC
ACGCCGAACGTGGTTCTTGATGCTGCAATACTGCGGCAAAAACACACATC
TTTGCCGTCCATGCTTCCGATTTTTTTGTTGCGGCCAGTCGTCTTTGGCG
ATACGCGCCCCGCTGCCCTACATCTGCGGGAAACTTGAAATTTGTGTACC
AGTCGCCCGCCGTGGCCCGGGATAAGGAAAAGCAGCCGAGGGTAACTACG
TATGTATGCGTGAGGGTGGTTTCCATGTCGCACACGCCTGTGCACGATCA
TGTGCGCGCGCTCGGGCTTCCTCTTGCTTTGAAATCTACCCAGTGGCGTA
TGGTATGCGAGCCCAACAGCTGGCGAGGTGAGAGAGAACATCGACCGAGA
TATTGTAGGTTGCTTTTGAAGCGTGTGTCTCGTGTGGTGTTGTATGACTC
TCTTTCGCCCCGTGTCTCCTCCGCCTCCTGTACACACGATCCTGCCATGA
AAGCTGCTTGGCGGTCGATAGAGCACCCCCTCCCCCTCCCCCGCCCCGAC
TGCCACTTAACCCGACACAAGTCGAAGAAGACACGAAAATCTCAAAATCT
CCCCGTGAATCATCCTACACCCTCCTCCTTCCCTCGCTACCACGGCCGCT
GCTTCCGGCCCGCCCAACGTTCGCTCAGGCGTACGGCAAGATCAAGCGGA
TGCTGAAGCGGTACCATTTCGTCAAGATGGGGCGGCAGCAGGGGGAAGAG
GACGCAGAGCTCCTGTTCGCTAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12925:1085..3357-

>mRNA_H-canaliculatus_F_contig12925.2438.1 ID=mRNA_H-canaliculatus_F_contig12925.2438.1|Name=mRNA_H-canaliculatus_F_contig12925.2438.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=552bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12925:1085..3357- (Hapterophycus canaliculatus Oshoro5f female)
ATGACCACATCTTCAATGCACTCGCCGGGGGTGTATCCCATGCGCACCCA
CGGCACGCTCAGTCACGCATATCACTTGGCGTCGTGCAATCCTGGTCTCC
AGAAGATCACGGTCAGTGCTACCACTGGATCCCCCCTACAAGTGTTCCGG
ACCAAATCCAGCTTCGCATATCGGAAATCCCATGACCACATCTTCAATGC
ACTCGCCGGGGGTGTATCCCATGCGCACCCACGGCACGCTCAGTCACGCA
TATCACTTGGCGTCGTGCAATCCTGGTCTCCAGAAGATCACGGTCAGTGC
TACCACTGGATCCCCCCTACAAGTGTTCCGGACCAAATCCAGCTTCGCAT
ATCGGAAATCCCGCGTACGGCAAGATCAAGCGGATGCTGAAGCGGTACCA
TTTCGTCAAGATGGGGCGGCAGCAGGGGGAAGAGGACGCAGAGCTCCTGT
TCGCTAGGCGTACGGCAAGATCAAGCGGATGCTGAAGCGGTACCATTTCG
TCAAGATGGGGCGGCAGCAGGGGGAAGAGGACGCAGAGCTCCTGTTCGCT
AG
back to top