mRNA_H-canaliculatus_F_contig12924.2437.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12924.2437.1
Unique NamemRNA_H-canaliculatus_F_contig12924.2437.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12924.2437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12924contigH-canaliculatus_F_contig12924:819..1975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size747
Cds size747
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929023.4811769-CDS-H-canaliculatus_F_contig12924:818..11501622929023.4811769-CDS-H-canaliculatus_F_contig12924:818..1150Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12924 819..1150 -
1696845651.2707918-CDS-H-canaliculatus_F_contig12924:818..11501696845651.2707918-CDS-H-canaliculatus_F_contig12924:818..1150Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12924 819..1150 -
1622929023.4921658-CDS-H-canaliculatus_F_contig12924:1560..19751622929023.4921658-CDS-H-canaliculatus_F_contig12924:1560..1975Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12924 1561..1975 -
1696845651.2819653-CDS-H-canaliculatus_F_contig12924:1560..19751696845651.2819653-CDS-H-canaliculatus_F_contig12924:1560..1975Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12924 1561..1975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12924.2437.1prot_H-canaliculatus_F_contig12924.2437.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12924 819..1975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12924.2437.1

>prot_H-canaliculatus_F_contig12924.2437.1 ID=prot_H-canaliculatus_F_contig12924.2437.1|Name=mRNA_H-canaliculatus_F_contig12924.2437.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=249bp
QGAPQNSSALSGLLRFPMCLVPLLSYHELASAICIYCLLWPSNILHSPSG
CMSVGNSGFVCDCGRRWRRQRERDLCRGCGGSSSGDPFSIRHETSPTRQN
RSQGAQVEHPPSPQFDAPGRIGQVLSGAGEQQQSVLGPGDSEAVDHGPQD
IPAGGAEEPPLTCPGTADDANDDPRPLLDRVETRLAINAHDSGPDVDDAE
DDPGIPTRDHGWGSDDEIVESVRDEGSSVAGDLPQPCDDSEAADANTPP
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mRNA from alignment at H-canaliculatus_F_contig12924:819..1975-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12924.2437.1 ID=mRNA_H-canaliculatus_F_contig12924.2437.1|Name=mRNA_H-canaliculatus_F_contig12924.2437.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1157bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12924:819..1975- (Hapterophycus canaliculatus Oshoro5f female)
CAGGGGGCTCCGCAGAATTCCTCTGCTCTGTCGGGACTGCTTCGCTTTCC
TATGTGTCTTGTTCCTCTCCTGTCCTACCACGAGCTCGCCTCTGCTATCT
GCATCTATTGTCTTCTGTGGCCATCCAACATCTTGCATAGTCCGTCAGGC
TGTATGTCGGTGGGGAATTCGGGGTTTGTCTGCGATTGCGGGCGCCGATG
GCGAAGGCAACGTGAGAGGGATTTGTGCAGAGGCTGCGGTGGAAGTTCAA
GTGGAGATCCTTTCTCCATCCGCCACGAAACATCGCCGACACGACAGAAT
AGGAGTCAGGGGGCGCAGGTGGAGCATCCTCCTTCTCCACAATTTGATGC
GCCTGGAAGGATCGGACAGGTTTTGTCCGGAGCTGGAGAGCAGCAGCAGT
CAGTCCTCGGGCCAGGTATGATACCTTGAAGAGTCAACATGTTTTTTTTT
GTTACACTTGCAGCAGTTGAAAGTCGTTCCCACTTGAAAATAAACTACTT
TACTTTCAGTAGTCAATATTGTATGTACGCCGACATACGTGCAGCCTCCT
CGGTACCTCTTGTCCCTGACCAACACAGTAGTGCTATGAATATACTTCAA
AAGATGAAAATTATTGCCCTGTCGTATGATGTTGTATTGGTGATCACACA
AGATTCATTGAGGGCAACTGCCGTCATCCTGAACATCCAAACAATCGCAA
CAAATGACCGGCCGCCATCTTTATGGGTCGACAAACTTCGACCAACGCGA
ATAACGAAAGCCACCAGTAGATCAATCGTCGGCGACGTGCATATTTCCCT
GCTTCTCCAAAACTTTGTCACGCAGGGGACAGCGAGGCTGTAGATCATGG
GCCACAAGATATCCCAGCTGGCGGAGCCGAGGAGCCGCCACTGACTTGTC
CTGGAACAGCCGACGACGCGAACGACGACCCTCGGCCCCTTCTTGATCGA
GTAGAAACTCGGCTCGCGATCAACGCCCATGACTCAGGCCCCGACGTCGA
CGACGCGGAGGACGACCCGGGAATCCCGACCCGTGATCACGGGTGGGGGT
CGGACGACGAGATCGTTGAATCCGTCCGTGACGAAGGATCCTCCGTCGCC
GGAGACCTACCCCAGCCGTGCGATGACTCCGAAGCCGCAGATGCGAATAC
GCCGCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12924:819..1975-

>mRNA_H-canaliculatus_F_contig12924.2437.1 ID=mRNA_H-canaliculatus_F_contig12924.2437.1|Name=mRNA_H-canaliculatus_F_contig12924.2437.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1494bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12924:819..1975- (Hapterophycus canaliculatus Oshoro5f female)
CAGGGGGCTCCGCAGAATTCCTCTGCTCTGTCGGGACTGCTTCGCTTTCC
TATGTGTCTTGTTCCTCTCCTGTCCTACCACGAGCTCGCCTCTGCTATCT
GCATCTATTGTCTTCTGTGGCCATCCAACATCTTGCATAGTCCGTCAGGC
TGTATGTCGGTGGGGAATTCGGGGTTTGTCTGCGATTGCGGGCGCCGATG
GCGAAGGCAACGTGAGAGGGATTTGTGCAGAGGCTGCGGTGGAAGTTCAA
GTGGAGATCCTTTCTCCATCCGCCACGAAACATCGCCGACACGACAGAAT
AGGAGTCAGGGGGCGCAGGTGGAGCATCCTCCTTCTCCACAATTTGATGC
GCCTGGAAGGATCGGACAGGTTTTGTCCGGAGCTGGAGAGCAGCAGCAGT
CAGTCCTCGGGCCAGCAGGGGGCTCCGCAGAATTCCTCTGCTCTGTCGGG
ACTGCTTCGCTTTCCTATGTGTCTTGTTCCTCTCCTGTCCTACCACGAGC
TCGCCTCTGCTATCTGCATCTATTGTCTTCTGTGGCCATCCAACATCTTG
CATAGTCCGTCAGGCTGTATGTCGGTGGGGAATTCGGGGTTTGTCTGCGA
TTGCGGGCGCCGATGGCGAAGGCAACGTGAGAGGGATTTGTGCAGAGGCT
GCGGTGGAAGTTCAAGTGGAGATCCTTTCTCCATCCGCCACGAAACATCG
CCGACACGACAGAATAGGAGTCAGGGGGCGCAGGTGGAGCATCCTCCTTC
TCCACAATTTGATGCGCCTGGAAGGATCGGACAGGTTTTGTCCGGAGCTG
GAGAGCAGCAGCAGTCAGTCCTCGGGCCAGGGGACAGCGAGGCTGTAGAT
CATGGGCCACAAGATATCCCAGCTGGCGGAGCCGAGGAGCCGCCACTGAC
TTGTCCTGGAACAGCCGACGACGCGAACGACGACCCTCGGCCCCTTCTTG
ATCGAGTAGAAACTCGGCTCGCGATCAACGCCCATGACTCAGGCCCCGAC
GTCGACGACGCGGAGGACGACCCGGGAATCCCGACCCGTGATCACGGGTG
GGGGTCGGACGACGAGATCGTTGAATCCGTCCGTGACGAAGGATCCTCCG
TCGCCGGAGACCTACCCCAGCCGTGCGATGACTCCGAAGCCGCAGATGCG
AATACGCCGCCCGGGACAGCGAGGCTGTAGATCATGGGCCACAAGATATC
CCAGCTGGCGGAGCCGAGGAGCCGCCACTGACTTGTCCTGGAACAGCCGA
CGACGCGAACGACGACCCTCGGCCCCTTCTTGATCGAGTAGAAACTCGGC
TCGCGATCAACGCCCATGACTCAGGCCCCGACGTCGACGACGCGGAGGAC
GACCCGGGAATCCCGACCCGTGATCACGGGTGGGGGTCGGACGACGAGAT
CGTTGAATCCGTCCGTGACGAAGGATCCTCCGTCGCCGGAGACCTACCCC
AGCCGTGCGATGACTCCGAAGCCGCAGATGCGAATACGCCGCCC
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