mRNA_H-canaliculatus_F_contig129.2418.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig129.2418.1
Unique NamemRNA_H-canaliculatus_F_contig129.2418.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig129.2418.1 vs. uniprot
Match: D8LHH9_ECTSI (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHH9_ECTSI)

HSP 1 Score: 423 bits (1087), Expect = 7.900e-143
Identity = 206/225 (91.56%), Postives = 214/225 (95.11%), Query Frame = 3 
Query:  318 SSKPSVALLLGDTFPDFEAETTQGPIKLHEYLGSSWGLVVSHPADFTPVCTTELGMCAKLNVEGGDFPKRDVKVLAISCDPLESHQGWIGDIKAHTGHEVNFPIIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVINPEKILKLALTYPASTGRNFDEIIRTIDSLQLTAAHSLATPANWQKGGSCMVLPTVSAEDAAVKFPEHETMEVPSGKGYLRVTPTS 992
            SS P VALLLGD FPDFEAETT GPIKLH+YLGSSWGL+ SHPADFTPVCTTELG CAKLNVEGG+FPKRDVK+LAISCDPLESHQGWIGDIKAHTGHEVNFP+IADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVI+PEKILKLALTYPASTGRNFDEIIR IDSLQLTA  SLATPA+WQKGGSCMVLPTVS EDAA KFPEH+TMEVPSGKGYLRVTPTS
Sbjct:    2 SSDP-VALLLGDKFPDFEAETTAGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTPTS 225
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BLAST of mRNA_H-canaliculatus_F_contig129.2418.1 vs. uniprot
Match: C5H3W2_ERISI (Glutathione peroxidase n=1 Tax=Eriocheir sinensis TaxID=95602 RepID=C5H3W2_ERISI)

HSP 1 Score: 270 bits (691), Expect = 1.700e-83
Identity = 128/218 (58.72%), Postives = 167/218 (76.61%), Query Frame = 3 
Query:  345 LGDTFPDFEAETTQGPIKLHEYLGSSWGLVVSHPADFTPVCTTELGMCAKLNVEGGDFPKRDVKVLAISCDPLESHQGWIGDIKAHTGHEVN----FPIIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVINPEKILKLALTYPASTGRNFDEIIRTIDSLQLTAAHSLATPANWQKGGSCMVLPTVSAEDAAVKFPEHETMEVPSGKGYLRVTP 986
            LGD FP+F A++T+GPIKLH YLG  WG++ SHP+D+TPVCTTELG  AK+  E   F KR+VKV+AISCD +E H GWI DI+A+  H+++    +PIIAD DR +A +LGM+ PD  +A GLP+T R V+VI P+K LKL++ YPA+TGRNF+EI+R IDSLQLT    +ATP+NW  G  CMV+P+VS E+A   FPEH+ ++VPSGK YLR+TP
Sbjct:    4 LGDVFPNFSADSTEGPIKLHSYLGDMWGILFSHPSDYTPVCTTELGTVAKMMPE---FTKRNVKVMAISCDSVEDHNGWIKDIQAY--HKLSGPFPYPIIADQDRDLAVTLGMIDPDEKTAAGLPLTARAVFVIGPDKKLKLSILYPATTGRNFNEILRVIDSLQLTKEKKVATPSNWCNGDQCMVVPSVSPEEAKKLFPEHKVIQVPSGKEYLRMTP 216
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BLAST of mRNA_H-canaliculatus_F_contig129.2418.1 vs. uniprot
Match: M1XMN8_9METZ (Alkyl hydroperoxide reductase n=1 Tax=Sycon ciliatum TaxID=27933 RepID=M1XMN8_9METZ)

HSP 1 Score: 270 bits (691), Expect = 1.700e-83
Identity = 129/216 (59.72%), Postives = 155/216 (71.76%), Query Frame = 3 
Query:  345 LGDTFPDFEAETTQGPIKLHEYLGSSWGLVVSHPADFTPVCTTELGMCAKLNVEGGDFPKRDVKVLAISCDPLESHQGWIGDIKAHTGH--EVNFPIIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVINPEKILKLALTYPASTGRNFDEIIRTIDSLQLTAAHSLATPANWQKGGSCMVLPTVSAEDAAVKFPEHETMEVPSGKGYLRVTP 986
            LGD FPDF A TT+G I  H +LG SWG++ SHPADFTPVCTTELG   +L  E   F KR+VK +A+SCDP++ H  WI DI+A++    +  +PIIAD  R +A   GML PD     G+P+T R V++I P+K LKL+L YPASTGRNFDEIIR IDSLQLTA   +ATP NWQ GG CMVLP+V  EDA   FPEH T E+PSGKGY+R TP
Sbjct:    5 LGDVFPDFTANTTKGSISFHSFLGDSWGILFSHPADFTPVCTTELGRVNQLLAE---FEKRNVKPIALSCDPVDKHSDWIKDIQAYSAQSGDWGYPIIADEQRELAVRFGMLDPDEKDKAGMPLTARCVFIIGPDKKLKLSLLYPASTGRNFDEIIRVIDSLQLTAYKKVATPVNWQPGGECMVLPSVKPEDAKTLFPEHYTKELPSGKGYMRFTP 217
[Close]
BLAST of mRNA_H-canaliculatus_F_contig129.2418.1 vs. uniprot
Match: UPI001E672362 (peroxiredoxin-6-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E672362)

HSP 1 Score: 270 bits (691), Expect = 1.700e-83
Identity = 131/216 (60.65%), Postives = 164/216 (75.93%), Query Frame = 3 
Query:  345 LGDTFPDFEAETTQGPIKLHEYLGSSWGLVVSHPADFTPVCTTELGMCAKLNVEGGDFPKRDVKVLAISCDPLESHQGWIGDIKAHT--GHEVNFPIIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVINPEKILKLALTYPASTGRNFDEIIRTIDSLQLTAAHSLATPANWQKGGSCMVLPTVSAEDAAVKFPEHETMEVPSGKGYLRVTP 986
            LGD FP+F AE++ G IKLH YLG SWG+V +HPADFTPVCTTELG  AKL  E   F KR+VK+LAISCD +E H GWI DI+A++    E  +PII D DR +A +LGM+ PD  +AEGLP++ R V++I P+K LKL+L YPA+TGRNF+EI+R IDS+QLTAA  +ATP +W+ G +CMVLP+VSAE+A   FPEH    VPSGK Y+R TP
Sbjct:    4 LGDVFPNFTAESSVGTIKLHTYLGDSWGIVFAHPADFTPVCTTELGCVAKLVPE---FTKRNVKLLAISCDSVEDHVGWIKDIQAYSELSGEFPYPIIGDKDRDLAVTLGMIDPDEKNAEGLPLSCRAVFLIGPDKRLKLSLLYPATTGRNFNEILRAIDSIQLTAAKKVATPVDWKPGSACMVLPSVSAEEAKSLFPEHTVHNVPSGKEYIRTTP 216
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BLAST of mRNA_H-canaliculatus_F_contig129.2418.1 vs. uniprot
Match: Q2V9X1_HYMPE (Glutathione peroxidase n=1 Tax=Hymeniacidon perlevis TaxID=177573 RepID=Q2V9X1_HYMPE)

HSP 1 Score: 270 bits (689), Expect = 3.260e-83
Identity = 125/214 (58.41%), Postives = 165/214 (77.10%), Query Frame = 3 
Query:  342 LLGDTFPDFEAETTQGPIKLHEYLGSSWGLVVSHPADFTPVCTTELGMCAKLNVEGGDFPKRDVKVLAISCDPLESHQGWIGDIKAHTG-HEVNFPIIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVINPEKILKLALTYPASTGRNFDEIIRTIDSLQLTAAHSLATPANWQKGGSCMVLPTVSAEDAAVKFPEHETMEVPSGKGYLRV 980
            +LG+ FP+F A+TT+G I  H+++G SW ++ SHPAD+TPVCTTELG  AKL  E   F KR+VKV+A+SCD +ESH+GWIGDIK+++   + ++PII+D  R +A  LGML P      GLP+T R V+++ P+K LKL+L YPA+TGRNFDEI+R +DSLQLTA   +ATPANWQ+GG CM+LP+VS EDA   FP +ET +VPSGKGY+RV
Sbjct:    3 VLGEVFPNFSADTTEGKIAFHDFVGDSWAILFSHPADYTPVCTTELGEVAKLIPE---FKKRNVKVIAVSCDDVESHKGWIGDIKSYSKVDDFSYPIISDPKRELAVQLGMLDPAEKDKAGLPLTARAVFIVGPDKKLKLSLLYPATTGRNFDEILRVVDSLQLTAYKKVATPANWQEGGKCMILPSVSKEDADKLFPGYETAQVPSGKGYIRV 213
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BLAST of mRNA_H-canaliculatus_F_contig129.2418.1 vs. uniprot
Match: B7U470_SCYPA (Peroxiredoxin 6 n=3 Tax=Portunidae TaxID=6757 RepID=B7U470_SCYPA)

HSP 1 Score: 268 bits (684), Expect = 1.860e-82
Identity = 122/216 (56.48%), Postives = 164/216 (75.93%), Query Frame = 3 
Query:  345 LGDTFPDFEAETTQGPIKLHEYLGSSWGLVVSHPADFTPVCTTELGMCAKLNVEGGDFPKRDVKVLAISCDPLESHQGWIGDIKAHTGHEVNFP--IIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVINPEKILKLALTYPASTGRNFDEIIRTIDSLQLTAAHSLATPANWQKGGSCMVLPTVSAEDAAVKFPEHETMEVPSGKGYLRVTP 986
            LGD FP+F A++T+GPIKLH YLG  WG++ SHP+D+TPVCTTELG  AK+  E   F KR+VKV+AISCD +E H GWI D++A+     +FP  IIAD DR +A +LGM+ PD  +A G+P+T R V+++ P+K LKL++ YPA+TGRNF+EI+R IDSLQLTA   +ATP+ W  G +CMVLP++ A++A   FPEH+ ++VPSGK Y+R TP
Sbjct:    4 LGDVFPNFSADSTEGPIKLHSYLGDKWGIIFSHPSDYTPVCTTELGTVAKMMPE---FTKRNVKVMAISCDTVEDHLGWIKDVQAYNNLTGDFPYPIIADPDRDLAVTLGMIDPDEKTASGMPLTCRAVFIVGPDKKLKLSILYPATTGRNFNEILRVIDSLQLTADKKVATPSGWCNGDNCMVLPSIPADEAKKMFPEHKVVQVPSGKEYIRTTP 216
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BLAST of mRNA_H-canaliculatus_F_contig129.2418.1 vs. uniprot
Match: A0A8J5NB70_HOMAM (Peroxiredoxin-6-like n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5NB70_HOMAM)

HSP 1 Score: 266 bits (679), Expect = 1.030e-81
Identity = 128/216 (59.26%), Postives = 161/216 (74.54%), Query Frame = 3 
Query:  345 LGDTFPDFEAETTQGPIKLHEYLGSSWGLVVSHPADFTPVCTTELGMCAKLNVEGGDFPKRDVKVLAISCDPLESHQGWIGDIKAHT--GHEVNFPIIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVINPEKILKLALTYPASTGRNFDEIIRTIDSLQLTAAHSLATPANWQKGGSCMVLPTVSAEDAAVKFPEHETMEVPSGKGYLRVTP 986
            LGD FP+F A +T G IKLH YL  SWG+V SHPAD+TPVCTTELG  AKL  E   F KR+VK++AISCD +E H GWI DI+++     +  FPIIAD DR +A +LGM+ PD  +A G+P+T R V++I P+K LKL++ YPA+TGRNFDEI+R IDSLQLTA   +ATPA+WQ+   CMVLP++ AE+A   FPEH+  +VPSGK YLR TP
Sbjct:    4 LGDVFPNFTANSTVGTIKLHTYLEDSWGVVFSHPADYTPVCTTELGRVAKLVPE---FTKRNVKLMAISCDSVEDHHGWIKDIQSYNCLSGDFPFPIIADPDRDLAVTLGMIDPDEKTATGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFDEILRVIDSLQLTAVKKVATPADWQQESHCMVLPSIPAEEAKKIFPEHKVHQVPSGKEYLRTTP 216
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BLAST of mRNA_H-canaliculatus_F_contig129.2418.1 vs. uniprot
Match: A0A2R2YWF5_EUPSU (Perxiredoxin-6 n=1 Tax=Euphausia superba TaxID=6819 RepID=A0A2R2YWF5_EUPSU)

HSP 1 Score: 265 bits (678), Expect = 1.660e-81
Identity = 123/216 (56.94%), Postives = 160/216 (74.07%), Query Frame = 3 
Query:  345 LGDTFPDFEAETTQGPIKLHEYLGSSWGLVVSHPADFTPVCTTELGMCAKLNVEGGDFPKRDVKVLAISCDPLESHQGWIGDIKAHTGHEVNFP--IIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVINPEKILKLALTYPASTGRNFDEIIRTIDSLQLTAAHSLATPANWQKGGSCMVLPTVSAEDAAVKFPEHETMEVPSGKGYLRVTP 986
            LGD FP+F AE+T+G I LH+YLG  WG++ SHPAD+TPVCTTELG  AKL  E   F KR+ K+ A+SCD +E H GWI DI+A+   + NFP  I+AD  R +A  LGM+ PD  +A G+P+T R V++I P+K LKL++ YPA+TGRNFDEI+R +DSLQLTA   +ATPA+W++G SCMV+P +S E A   FP+H+  +VPSGK YLR TP
Sbjct:    4 LGDVFPNFTAESTKGTIHLHDYLGDKWGIMFSHPADYTPVCTTELGRVAKLTPE---FTKRNCKLQAVSCDSVEDHHGWIKDIQAYNNLDGNFPYPIVADEKRELAVQLGMIDPDEKTASGMPLTARAVFIIGPDKKLKLSILYPATTGRNFDEILRVLDSLQLTAHKKVATPADWKQGSSCMVVPNISKEQAKQMFPQHKVHQVPSGKEYLRTTP 216
[Close]
BLAST of mRNA_H-canaliculatus_F_contig129.2418.1 vs. uniprot
Match: A0A7S3V176_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V176_9STRA)

HSP 1 Score: 265 bits (678), Expect = 1.830e-81
Identity = 128/218 (58.72%), Postives = 164/218 (75.23%), Query Frame = 3 
Query:  345 LGDTFPDFEAETTQGPIKLHEYLGSSWGLVVSHPADFTPVCTTELGMCAKLNVEGGDFPKRDVKVLAISCDPLESHQGWIGDIKAHT---GHEVNFPIIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVINPEKILKLALTYPASTGRNFDEIIRTIDSLQLTAAHSLATPANWQKGGSCMVLPTVSAEDAAVKFPEHETM-EVPSGKGYLRVTP 986
            LG  FP+F  ET+QGP+K HEY+  SW ++ SHPADFTPVCTTELGM AK++ +   F KR VK+ A+SCD +ESH+GWI DI +     G ++ +PIIAD +R+IA  LGML PD  +A GLPM  R V++I P+K LKL+L YPA+TGRNFDEIIR +DSLQLTA  S+ATPANW  G  CMV+P++S E+A  KFP+  T+ ++PSGKGY+R TP
Sbjct:    6 LGKEFPNFSVETSQGPMKFHEYIDGSWAILFSHPADFTPVCTTELGMVAKMSPQ---FAKRGVKLAALSCDNVESHKGWIPDILSQQMIKGDDLPYPIIADPERTIAIQLGMLDPDEKNAAGLPMACRAVFIIGPDKKLKLSLLYPATTGRNFDEIIRVVDSLQLTANESVATPANWNAGKDCMVVPSISNEEAVTKFPKGFTVAKMPSGKGYMRFTP 220
[Close]
BLAST of mRNA_H-canaliculatus_F_contig129.2418.1 vs. uniprot
Match: A0A1W0A4M4_9STRA (Thioredoxin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4M4_9STRA)

HSP 1 Score: 265 bits (677), Expect = 2.660e-81
Identity = 126/217 (58.06%), Postives = 164/217 (75.58%), Query Frame = 3 
Query:  339 LLLGDTFPDFEAETTQGPIKLHEYLGSSWGLVVSHPADFTPVCTTELGMCAKLNVEGGDFPKRDVKVLAISCDPLESHQGWIGDIKAHTGHEVNFPIIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVINPEKILKLALTYPASTGRNFDEIIRTIDSLQLTAAHSLATPANWQKGGSCMVLPTVSAEDAAVKFPE-HETMEVPSGKGYLRVTP 986
            + LGD  PDF  +++QGP+ L +Y    WGL+ SHP D+TP+CTTELG  A+L+   G+F KR VKV+ +SC+ + SHQGWI DI+A++GH+VN+PIIAD +R IA+ LGML  D +   GLP+TVR+V+V+ P+  +KL LTYPASTGRNF EI+R IDSLQLT+ +S ATP NW KG    ++PTVS EDAA KFP+ +E  E+PSGKGYLR TP
Sbjct:    8 ITLGDKIPDFAFDSSQGPLSLKQYFDGQWGLLCSHPDDYTPICTTELGELARLD-NLGEFSKRHVKVIGLSCNDVNSHQGWIKDIEAYSGHQVNYPIIADKNRVIASELGMLSSDDLDKAGLPLTVRSVFVLGPDLSIKLTLTYPASTGRNFVEILRVIDSLQLTSNYSCATPVNWVKGEKACIVPTVSNEDAAHKFPKGYEIEELPSGKGYLRFTP 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig129.2418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHH9_ECTSI7.900e-14391.56Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
C5H3W2_ERISI1.700e-8358.72Glutathione peroxidase n=1 Tax=Eriocheir sinensis ... [more]
M1XMN8_9METZ1.700e-8359.72Alkyl hydroperoxide reductase n=1 Tax=Sycon ciliat... [more]
UPI001E6723621.700e-8360.65peroxiredoxin-6-like n=1 Tax=Procambarus clarkii T... [more]
Q2V9X1_HYMPE3.260e-8358.41Glutathione peroxidase n=1 Tax=Hymeniacidon perlev... [more]
B7U470_SCYPA1.860e-8256.48Peroxiredoxin 6 n=3 Tax=Portunidae TaxID=6757 RepI... [more]
A0A8J5NB70_HOMAM1.030e-8159.26Peroxiredoxin-6-like n=1 Tax=Homarus americanus Ta... [more]
A0A2R2YWF5_EUPSU1.660e-8156.94Perxiredoxin-6 n=1 Tax=Euphausia superba TaxID=681... [more]
A0A7S3V176_9STRA1.830e-8158.72Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A1W0A4M4_9STRA2.660e-8158.06Thioredoxin n=1 Tax=Thraustotheca clavata TaxID=74... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig129contigH-canaliculatus_F_contig129:43642..49316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score259.2
Seed ortholog evalue2e-66
Seed eggNOG ortholog6669.EFX65355
Preferred nameTPX5
KEGG rclassRC00034
KEGG koko:K11188
KEGG ReactionR00602,R02596,R03919,R04007,R07443
KEGG Pathwayko00940,ko01100,ko01110,map00940,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0042221,GO:0042737,GO:0042743,GO:0042744,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0070887,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1990748
EggNOG free text desc.activity. It is involved in the biological process described with oxidation-reduction process
EggNOG OGs38CN4@33154,3BBQ4@33208,3CW2U@33213,41X9B@6656,COG0450@1,KOG0854@2759
EC1.11.1.15,1.11.1.7
COG Functional cat.O
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionGlutathione peroxidase
Ec32 orthologEc-11_004010.1
Exons6
Model size1912
Cds size783
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig129.2418.1prot_H-canaliculatus_F_contig129.2418.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig129 44559..49104 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.3877141-UTR-H-canaliculatus_F_contig129:43641..445581622929021.3877141-UTR-H-canaliculatus_F_contig129:43641..44558Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig129 43642..44558 -
1696845650.3822563-UTR-H-canaliculatus_F_contig129:43641..445581696845650.3822563-UTR-H-canaliculatus_F_contig129:43641..44558Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig129 43642..44558 -
1622929021.5022085-UTR-H-canaliculatus_F_contig129:49104..493161622929021.5022085-UTR-H-canaliculatus_F_contig129:49104..49316Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig129 49105..49316 -
1696845650.4539149-UTR-H-canaliculatus_F_contig129:49104..493161696845650.4539149-UTR-H-canaliculatus_F_contig129:49104..49316Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig129 49105..49316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.4067552-CDS-H-canaliculatus_F_contig129:44558..446181622929021.4067552-CDS-H-canaliculatus_F_contig129:44558..44618Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig129 44559..44618 -
1696845650.3927243-CDS-H-canaliculatus_F_contig129:44558..446181696845650.3927243-CDS-H-canaliculatus_F_contig129:44558..44618Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig129 44559..44618 -
1622929021.426896-CDS-H-canaliculatus_F_contig129:45287..454221622929021.426896-CDS-H-canaliculatus_F_contig129:45287..45422Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig129 45288..45422 -
1696845650.4017048-CDS-H-canaliculatus_F_contig129:45287..454221696845650.4017048-CDS-H-canaliculatus_F_contig129:45287..45422Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig129 45288..45422 -
1622929021.4412088-CDS-H-canaliculatus_F_contig129:45769..459201622929021.4412088-CDS-H-canaliculatus_F_contig129:45769..45920Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig129 45770..45920 -
1696845650.4105756-CDS-H-canaliculatus_F_contig129:45769..459201696845650.4105756-CDS-H-canaliculatus_F_contig129:45769..45920Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig129 45770..45920 -
1622929021.461615-CDS-H-canaliculatus_F_contig129:46131..462731622929021.461615-CDS-H-canaliculatus_F_contig129:46131..46273Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig129 46132..46273 -
1696845650.4191735-CDS-H-canaliculatus_F_contig129:46131..462731696845650.4191735-CDS-H-canaliculatus_F_contig129:46131..46273Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig129 46132..46273 -
1622929021.4753172-CDS-H-canaliculatus_F_contig129:47324..474451622929021.4753172-CDS-H-canaliculatus_F_contig129:47324..47445Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig129 47325..47445 -
1696845650.428799-CDS-H-canaliculatus_F_contig129:47324..474451696845650.428799-CDS-H-canaliculatus_F_contig129:47324..47445Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig129 47325..47445 -
1622929021.4900255-CDS-H-canaliculatus_F_contig129:48930..491041622929021.4900255-CDS-H-canaliculatus_F_contig129:48930..49104Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig129 48931..49104 -
1696845650.4432757-CDS-H-canaliculatus_F_contig129:48930..491041696845650.4432757-CDS-H-canaliculatus_F_contig129:48930..49104Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig129 48931..49104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig129.2418.1

>prot_H-canaliculatus_F_contig129.2418.1 ID=prot_H-canaliculatus_F_contig129.2418.1|Name=mRNA_H-canaliculatus_F_contig129.2418.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=261bp
MLAGFSRRSAPATRSFLFARHRAKSAPTSCTKMATSSKPSVALLLGDTFP
DFEAETTQGPIKLHEYLGSSWGLVVSHPADFTPVCTTELGMCAKLNVEGG
DFPKRDVKVLAISCDPLESHQGWIGDIKAHTGHEVNFPIIADADRSIAAS
LGMLHPDHMSAEGLPMTVRTVYVINPEKILKLALTYPASTGRNFDEIIRT
IDSLQLTAAHSLATPANWQKGGSCMVLPTVSAEDAAVKFPEHETMEVPSG
KGYLRVTPTS*
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mRNA from alignment at H-canaliculatus_F_contig129:43642..49316-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig129.2418.1 ID=mRNA_H-canaliculatus_F_contig129.2418.1|Name=mRNA_H-canaliculatus_F_contig129.2418.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5675bp|location=Sequence derived from alignment at H-canaliculatus_F_contig129:43642..49316- (Hapterophycus canaliculatus Oshoro5f female)
GCTTGATACTTCGCACGTGGGTTGCGCTTTGCACCGAGTTGACAAATGTT
ATTATGCCGACTGTCACGATCTTGCGTCGCCCCTTGTTCCTCAAAACACT
TGCTAAGATAAACGGCACAACGCAGGCCTTGTGAAACAGAGACAATACGA
CAACATCCCGATCAGACCGTGACAACCTTTAGGGTGAGGGTACCCCCACT
TTCGATTCAGTCATGCTCGCTGGATTTTCAAGGAGATCTGCACCCGCCAC
GCGGTCATTCCTTTTTGCCCGCCATCGAGCCAAGTCTGCCCCAACCTCCT
GCACCAAGATGGCCACGTCTTCGAAGCCCTCCGTTGCTCTCTTGCTGGGC
GACACTTTCCCTGACTTCGAGGCTGAAACCACACAGGTGTGAGCACGTTG
ACCTTTTTGCCTCGATGAAGTTTGCGATTCTGTGGAGCCAGCTCGTCTTG
TGTCTTTTCTTCGAAATTTTGCTACATAAGCTGAAAGACTCCGCCCAATT
CGATGACGAGGAATGTAACATGACTGCGAAAATTAGAAAATTACTTCCTG
TGCGGAAGATTTGTTCTGGAGTACCAAATCCAGGGGATTACGTTCGACTC
CGTAGCTTTCACGTCTTGAGACAGGTCTGCGCATGGGCTTTTCGAGTATG
TGTCATGTGCGCAGGGTACTCTGAAAAACACGAACTGCCCTTCAATTCCA
ATGCATGTCGCAACTGAATCTTGTTGGGCAAGAGCGTACAAGTAGAGGGT
AGTGAACGGAGGGAGGCGGCCTTTTCAACCTACTTCTGGCCAGAGGGCCT
GTTCGATGCGCTCCCTCTACTCGGCATCTCTCTTCCGCACTGCATGATCG
GAAACTAAAAGCTGGATACACCTCACGACTGACTCCAATGGGAGGCGGCC
TTCAACAACCATGTCTTCTGACGAGAATCGTCACGCAATTCCGTCGGTGT
CTTCAGTCCTTCGGCGAGAGCTATACTTCGGAGTACATGTAAACGCTAGC
GGATCATCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTCTCG
CCGCCGCCTCTGCTTCCGCGGCTTCCCACCTACTCCAGCAACTACATCCG
ACTCTGTTCCATTGATGCCTTCCGGTGATACTGGGCGGGTGTTGAGGAAC
CCTTATGTACGAAATACTTCGCGCAAAGCACTCTGTGTTCGCGCCTTTTC
GCTTCGGTGGTTCCCACCGCACCATCGACATAGCAGATATACATACATAA
ATGCTTCGATTCCCTCAAGCCTTTCCACCGCGAAACCCTTCCAGACCTGC
CGGAAAGCAGAGTAGAACTTGCTTCCCATCGGCTTCTTGCCCCTACCCTT
TCGCCACGGTAGAGTCCGCCCATTGCCATGCCCAGGTCTGCGGTCGGGTT
GCGGATCCCTTCACGTCTTAGGTTTTCTTCCAGCGAATTGTGGTGGTTCG
TGGTCTTGGTGTTGAACCAGGCACGACCGGAGGGGGACCGTAAATCGCCG
TCGAGTTTGTACGGCTACGAAGCACGGCAGGGCTAGAGCTACATACGATG
TTTGCAGTATGTTGATTATTCTTCCCGCGAGAACACTGCTATTGCGATCC
GCACGAAGCCTCTACCGTGTACGTCCAGGACCACCGTCTTTTCCTTTTTG
CACCGAACGTAGGTCCCATCACCTTTCTTTTTTGCATCGTGGCGTTTGAA
GCCAGCCCTCTTGACACAACCACCGTGGCACTTCATGCGCGCGCGTCTTT
CATCGGATTCTCGCGAGATACCTCTGGTGTGCTTCCTTGCACACGCACAT
GTCATTTATTTGCCGCCGCATGTGCGCCCTCGTTTCTTCCCGGTTTCTGC
CTGCGACCACGACAACACCAGGGCCCCATCAAGCTCCACGAATACCTCGG
ATCTTCATGGGGACTGGTCGTCTCGCACCCGGCCGACTTCACACCCGTGT
GCACCACTGAGCTCGGGATGTGCGCGAAGCTGAACGTGGAAGGTGGGCAA
GTGTTCCTCCTGATGTCCCTCCTCTTTATTTTTGTCATGCTCCTCCTACT
TATCCGTCGGTGCTATTCGCTGTTTGTTGTTGTTGGTGAGAGTAGTGCGG
CCGCGAGGTGGTGTATCGTACCTCATGCTGACTGCTTCTGCATGAGGTCT
ACTGCTCGTTCGCGTGCTGCACAGTAGTATCCGTATTCATGCTGCGATTG
AAAACAACCACGCTGGTGTACGCTTTCGTTCCTTGCCGAAAGCATCCTTG
GCGTTGAGTGCTATGCGTGATGGGGGGAGGGAAGTAGTCTATCCCGTGAA
TGTGTTTGGCCTTGTCCTTGTGTCGAGGATTGGGAGAGATTGATGGGTAT
CAACGCATTAACAGAAAAAAAGGCTACAATATCAATAAAATTGTCAAGAC
GTGTCTATCTACTTTTATCTATTGTGCTTGACTTCGTTTTTTCTTCCAGT
ATTTTTTTGAATAGGTGTGTGATAGACGACGGTTGGGAAACCTTTTATTG
CTGGCAGGTCGTTTTCGTGGTCCTCCGCTTTTGAACAAGCCCCCGCAACA
TGAAAAGCACTCCCTCGACACTGACTCCAATTCTCGGCGAGAGTTCTAAC
AGCAACGTTTCGACCAAAGAGGCGGGTCGCCTGATTGTTCAGCATGTCGC
CATTTTTTCCATTTTATAGCTAAACACCCTGCGAGTCAAAATATCTTGCA
GCCCGACGGTGCAGCCCGACTGGCTCTTTCCAGATACTGATAGATCCAAA
TTCAACTCATCTACAACTGACCTACACAAATCCAAGGCAAAAAATGCCGA
ACAACTTTTGGCAGACGTTTGTTCCTTTGTAACGTGTTTCCGGGCGGAAA
TCCAGCACGTGCTGAAGTGATGGGGATGCTTTCGTTTCACGTCCGCCTTC
CGATGCACATACACGAAACGTGTGAACAATGCAACGATGCAAATGGGTTA
TGCCAGTTCAACGTCAACCAGCCTTCGTTTTTGCTCCAGATATTTGTGAC
ATATTTTTTTAGCATGGTGTCCTTCTGTATCTTCCTGTTTTAGGTGGGGA
CTTCCCGAAGCGCGACGTCAAGGTATTGGCCATTTCCTGCGATCCTCTGG
AGTCGCACCAGGGCTGGATCGGGGACATAAAGGCTCACACCGGCCACGAG
GTTAACTTCCCTATCATCGCGGACGCAGACCGCAGGTAGAAGGGAGACGG
CGGCGAGGGAAGAGTTTTAAGAAAGGATGGAAAGACGGAGTGGGGGAGAA
CGATTGGCATAGGATCAATCGCCAGTACGTTTCACCTCTTGCACACGCCG
CGGCTGCGTCCCCTTGACCCGTGCGTGACATGCATTTTTATCCGGGCGGC
TGGTGTCTTAACGCCCGACCCTCCTTGTTCGTTATTTACCTTCTAGCATC
GCGGCTTCTTTGGGCATGCTGCACCCGGACCACATGAGCGCGGAGGGGCT
CCCGATGACGGTTCGCACCGTGTACGTCATCAACCCGGAAAAAATCCTGA
AGCTCGCGCTCACGTACCCGGCCTCGACGGGCCGCAACTTCGACGAGGTT
GGTGACGGAAATAATCGCGCGATGAATTCATTCTCGTCGACGGGACGCCA
GCTTGTCCTGTAGCCGTCGCGTCTAGGAAACGTGCCATTTACTGTCGCAA
GCTAGATGCCAAACCCACCAACAAAGGCTCACAAAGGTGAAGTTTCCCCC
ACCCCCCTTGACTACGGCCATGCATGATTGGAGGATGAGCCCCCCCGCCC
CGGCCCTGAGAGTGTCAGCAGATTAGGTGCTACTTGGGAACTGTAGTTTC
GAAGTCGACTCTGCTAAGAGCACGAACAGTTATTCGCCTCAACGAAGCTT
CACCTCGTCAATCGTGTAAATCGCCGCGGCCGTTTCATCCGCAGATCATT
CGGACGATCGACTCCCTCCAGCTCACCGCCGCCCACAGCCTGGCCACCCC
GGCTAATTGGCAGAAGGGTGGTAGCTGCATGGTGCTGCCCACCGTCAGCG
CCGAAGACGCGGCCGTGAAATTCCCGGAGGTGAAAAATGCCTACAGTAGT
ATCGTTGCAATACGGCACCCCTAGCGACTGAAGCATCCCCTGATCTGCAA
GTATCTCGCTCAAGAAAATCTGTACGCCGGGAGCAGCTGTCCAACGCACC
ATAAATATGTGTTTGTAGATGTGTTTCGGTGGCAAGCAGTGATCGTGAGT
ATTTTAGTGTTTGGTACGTGTTTTTTTTCAACCACCCGAAACGAGCCATC
ATACCCACCACCACTGCACCTACGGGTACACGCCCGCGCTGTGATGTCGG
CAGTTTCATCTTCGTGTGTGTGTTTTAAATCATCAACAATGAGTTCGAGG
TCAATGAAGGTGGCAGCATGAGGCGTCAGCGCCGATGGCGAAGAGCCTAC
TTGTATCTCGACTCTGAGTTCGGACCGATTTCGGTCTGCAATGACCATCT
TCGGCGAGAGTCCCATTCTTACGGACAGGTGTTCGTTTTGTGATGCATTG
ATTCCAGGGACAATCCTTGATAGGCATCCTGGAATGTTTTTTATGTCCAG
GGGTTGTCACATGAGTTGCGGGCACCCGGCCAAATGGCGCTATACATACC
AGTGCAACTTCTGGACGTGTGTGCTCGTCGCTCAACATGCTCTTGTGCCG
GCGCTCCTCGAACGCCCCCTCATCCCTTCCGTAATTTCTTCCGTGCAGCA
CGAGACGATGGAAGTACCGTCGGGTAAGGGTTACCTGCGCGTCACGCCCA
CGTCCTGATCGATCGGCTCACGGATGCTGCCCCGGCATCTCGGAAAATGG
GCGAAATGCAGAATGCACGGAAGAGAAGCGGCAACTCGTCGTTTCGTGCT
CTTTGTAGCTGGAGACCTCGCTTGATTTCAAAATAGAGCTGGGGCTGTCT
TGGTCCAAGAACGTTTCCATCCAACCGGGTGCACGAAGCAGGGGAGTTTT
TAATCCCAGGAGTTTTCATATAGCTGCCTCATGGTGATGACTACGATCCC
ATTGGCGTAATCTGACGAATGAAGCAGCAGGCTTCGTGTCGATTTGTGTC
GGGTAAGAAGGTAGCCGAGTTACCTTCGAGTGAAGTTGGTCGTTGGAGCA
TTTTGTCCGCAGGGAGGAGGACGAACGGATCCGTTCGACGCGGCGCCGGA
GTACGAAACCAGGACCAGGAAAGACCTGGGAACCCAGTTTGGTCTTGTGT
AGTATGCACGCAGGATATGCTGACACCTTCTGGTAGATCTCGTGTGAAGA
AGGGTCAATCAATGAAATTAATGTTAGACCTACATACCGTTCCAAGTAGG
CGCACGTGGATCGGATGCGATTTCGAGGTAGCCTCGTAATTCTGAAAAAG
CCTTGAAAAAGCTTAAGACTAGCGGCGTTCATCCGCGGAGGAAGCTTCCT
GGGAGATGGCGGAAAAATTTCCCTTCACACTTCACACTGTCAACATGCAC
AGTTTTGCCATCGACATCCGGGAACTTGAGTGTTTCTCGCGTCACTGTTC
GCTGAGTTCTGTTCTGAATCCGCGACTTCATTTGATAGGCGCTCACTCCG
TTGTGTGTAGGCAATCAAGTTAAGTCTGGTATATACCACCAGCTGGACAT
CCGTTCGCTCGAAAGACGCCAAATCAGCGCGCATCGAGACGGGAGGGTCG
GCACCTCGACAAATGCACGTGTGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig129:43642..49316-

>mRNA_H-canaliculatus_F_contig129.2418.1 ID=mRNA_H-canaliculatus_F_contig129.2418.1|Name=mRNA_H-canaliculatus_F_contig129.2418.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1566bp|location=Sequence derived from alignment at H-canaliculatus_F_contig129:43642..49316- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCGCTGGATTTTCAAGGAGATCTGCACCCGCCACGCGGTCATTCCT
TTTTGCCCGCCATCGAGCCAAGTCTGCCCCAACCTCCTGCACCAAGATGG
CCACGTCTTCGAAGCCCTCCGTTGCTCTCTTGCTGGGCGACACTTTCCCT
GACTTCGAGGCTGAAACCACACAGATGCTCGCTGGATTTTCAAGGAGATC
TGCACCCGCCACGCGGTCATTCCTTTTTGCCCGCCATCGAGCCAAGTCTG
CCCCAACCTCCTGCACCAAGATGGCCACGTCTTCGAAGCCCTCCGTTGCT
CTCTTGCTGGGCGACACTTTCCCTGACTTCGAGGCTGAAACCACACAGGG
CCCCATCAAGCTCCACGAATACCTCGGATCTTCATGGGGACTGGTCGTCT
CGCACCCGGCCGACTTCACACCCGTGTGCACCACTGAGCTCGGGATGTGC
GCGAAGCTGAACGTGGAAGGGCCCCATCAAGCTCCACGAATACCTCGGAT
CTTCATGGGGACTGGTCGTCTCGCACCCGGCCGACTTCACACCCGTGTGC
ACCACTGAGCTCGGGATGTGCGCGAAGCTGAACGTGGAAGGTGGGGACTT
CCCGAAGCGCGACGTCAAGGTATTGGCCATTTCCTGCGATCCTCTGGAGT
CGCACCAGGGCTGGATCGGGGACATAAAGGCTCACACCGGCCACGAGGTT
AACTTCCCTATCATCGCGGACGCAGACCGCAGGTGGGGACTTCCCGAAGC
GCGACGTCAAGGTATTGGCCATTTCCTGCGATCCTCTGGAGTCGCACCAG
GGCTGGATCGGGGACATAAAGGCTCACACCGGCCACGAGGTTAACTTCCC
TATCATCGCGGACGCAGACCGCAGCATCGCGGCTTCTTTGGGCATGCTGC
ACCCGGACCACATGAGCGCGGAGGGGCTCCCGATGACGGTTCGCACCGTG
TACGTCATCAACCCGGAAAAAATCCTGAAGCTCGCGCTCACGTACCCGGC
CTCGACGGGCCGCAACTTCGACGAGCATCGCGGCTTCTTTGGGCATGCTG
CACCCGGACCACATGAGCGCGGAGGGGCTCCCGATGACGGTTCGCACCGT
GTACGTCATCAACCCGGAAAAAATCCTGAAGCTCGCGCTCACGTACCCGG
CCTCGACGGGCCGCAACTTCGACGAGATCATTCGGACGATCGACTCCCTC
CAGCTCACCGCCGCCCACAGCCTGGCCACCCCGGCTAATTGGCAGAAGGG
TGGTAGCTGCATGGTGCTGCCCACCGTCAGCGCCGAAGACGCGGCCGTGA
AATTCCCGGAGATCATTCGGACGATCGACTCCCTCCAGCTCACCGCCGCC
CACAGCCTGGCCACCCCGGCTAATTGGCAGAAGGGTGGTAGCTGCATGGT
GCTGCCCACCGTCAGCGCCGAAGACGCGGCCGTGAAATTCCCGGAGCACG
AGACGATGGAAGTACCGTCGGGTAAGGGTTACCTGCGCGTCACGCCCACG
TCCTGACACGAGACGATGGAAGTACCGTCGGGTAAGGGTTACCTGCGCGT
CACGCCCACGTCCTGA
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