mRNA_H-canaliculatus_F_contig12832.2364.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12832.2364.1
Unique NamemRNA_H-canaliculatus_F_contig12832.2364.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12832.2364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12832contigH-canaliculatus_F_contig12832:1439..2352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size916
Cds size912
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929014.1658306-CDS-H-canaliculatus_F_contig12832:1438..23501622929014.1658306-CDS-H-canaliculatus_F_contig12832:1438..2350Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12832 1439..2350 +
1696845647.5542765-CDS-H-canaliculatus_F_contig12832:1438..23501696845647.5542765-CDS-H-canaliculatus_F_contig12832:1438..2350Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12832 1439..2350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12832.2364.1prot_H-canaliculatus_F_contig12832.2364.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12832 1439..2350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12832.2364.1

>prot_H-canaliculatus_F_contig12832.2364.1 ID=prot_H-canaliculatus_F_contig12832.2364.1|Name=mRNA_H-canaliculatus_F_contig12832.2364.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=304bp
GVKNTREVEGEERGGRESRELKRAVAQVVPFLPSMAGRYIDPLTGEEEEK
DEERGTQDQTAVGGGAAGDTPGTADCEMLETAGGTGGAGEDIDAGAGAGA
RKADRARAGAETPAQRKDYARLAGERATVRFETPGSAERTGTGGARQRGD
VGMRHREGRTDQARQTGVAYPPYRYMTPRSEPIPAFVHGFGGNHASRQHG
GSSYSGEGFGYRGQDGYGTAGFQTRGPQPWNGQTQQQAYGGRGGVTAGGQ
QMVDGQGGWSGFQPQPQQQQQRQANLGVVPLHDGGGGWRRDGSGWAKVVP
GEPP
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mRNA from alignment at H-canaliculatus_F_contig12832:1439..2352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12832.2364.1 ID=mRNA_H-canaliculatus_F_contig12832.2364.1|Name=mRNA_H-canaliculatus_F_contig12832.2364.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=914bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12832:1439..2352+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGTCAAGAACACGAGGGAGGTCGAAGGAGAAGAGCGAGGAGGAAGAGA
GAGTCGAGAGCTCAAGCGAGCTGTAGCACAAGTCGTTCCTTTCCTTCCAA
GTATGGCAGGACGATATATAGACCCGCTTACCGGCGAAGAAGAGGAGAAG
GATGAAGAGAGGGGAACACAGGACCAAACAGCTGTAGGGGGAGGAGCAGC
AGGCGACACGCCAGGAACCGCAGACTGCGAGATGCTGGAGACCGCCGGAG
GGACCGGCGGAGCGGGGGAAGACATTGACGCGGGCGCGGGCGCAGGGGCG
CGCAAGGCCGACAGGGCACGAGCAGGAGCAGAAACCCCGGCGCAAAGGAA
AGACTACGCGAGGCTGGCAGGAGAGCGTGCAACGGTGAGATTTGAGACGC
CCGGATCAGCCGAAAGGACGGGGACAGGAGGAGCGCGTCAGAGGGGCGAC
GTTGGCATGAGGCATCGAGAGGGAAGAACCGATCAGGCTAGGCAGACGGG
TGTAGCATATCCGCCGTATCGATACATGACGCCCCGCAGCGAACCCATCC
CCGCTTTCGTTCACGGATTCGGAGGAAATCACGCTTCCCGTCAACATGGA
GGGAGTTCGTACAGCGGAGAGGGGTTCGGATACCGGGGACAGGACGGGTA
CGGGACAGCCGGGTTTCAAACGCGGGGCCCGCAGCCGTGGAACGGGCAGA
CACAGCAGCAGGCGTACGGGGGAAGGGGCGGGGTAACGGCAGGCGGTCAA
CAGATGGTAGATGGGCAAGGCGGATGGAGTGGGTTTCAACCGCAGCCGCA
GCAGCAGCAGCAGCGACAAGCGAACCTGGGAGTTGTTCCGCTACACGACG
GCGGGGGTGGGTGGAGAAGGGACGGTAGCGGTTGGGCGAAGGTGGTACCG
GGAGAGCCGCCGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12832:1439..2352+

>mRNA_H-canaliculatus_F_contig12832.2364.1 ID=mRNA_H-canaliculatus_F_contig12832.2364.1|Name=mRNA_H-canaliculatus_F_contig12832.2364.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1824bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12832:1439..2352+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGTCAAGAACACGAGGGAGGTCGAAGGAGAAGAGCGAGGAGGAAGAGA
GAGTCGAGAGCTCAAGCGAGCTGTAGCACAAGTCGTTCCTTTCCTTCCAA
GTATGGCAGGACGATATATAGACCCGCTTACCGGCGAAGAAGAGGAGAAG
GATGAAGAGAGGGGAACACAGGACCAAACAGCTGTAGGGGGAGGAGCAGC
AGGCGACACGCCAGGAACCGCAGACTGCGAGATGCTGGAGACCGCCGGAG
GGACCGGCGGAGCGGGGGAAGACATTGACGCGGGCGCGGGCGCAGGGGCG
CGCAAGGCCGACAGGGCACGAGCAGGAGCAGAAACCCCGGCGCAAAGGAA
AGACTACGCGAGGCTGGCAGGAGAGCGTGCAACGGTGAGATTTGAGACGC
CCGGATCAGCCGAAAGGACGGGGACAGGAGGAGCGCGTCAGAGGGGCGAC
GTTGGCATGAGGCATCGAGAGGGAAGAACCGATCAGGCTAGGCAGACGGG
TGTAGCATATCCGCCGTATCGATACATGACGCCCCGCAGCGAACCCATCC
CCGCTTTCGTTCACGGATTCGGAGGAAATCACGCTTCCCGTCAACATGGA
GGGAGTTCGTACAGCGGAGAGGGGTTCGGATACCGGGGACAGGACGGGTA
CGGGACAGCCGGGTTTCAAACGCGGGGCCCGCAGCCGTGGAACGGGCAGA
CACAGCAGCAGGCGTACGGGGGAAGGGGCGGGGTAACGGCAGGCGGTCAA
CAGATGGTAGATGGGCAAGGCGGATGGAGTGGGTTTCAACCGCAGCCGCA
GCAGCAGCAGCAGCGACAAGCGAACCTGGGAGTTGTTCCGCTACACGACG
GCGGGGGTGGGTGGAGAAGGGACGGTAGCGGTTGGGCGAAGGTGGTACCG
GGAGAGCCGCCGGGGGTCAAGAACACGAGGGAGGTCGAAGGAGAAGAGCG
AGGAGGAAGAGAGAGTCGAGAGCTCAAGCGAGCTGTAGCACAAGTCGTTC
CTTTCCTTCCAAGTATGGCAGGACGATATATAGACCCGCTTACCGGCGAA
GAAGAGGAGAAGGATGAAGAGAGGGGAACACAGGACCAAACAGCTGTAGG
GGGAGGAGCAGCAGGCGACACGCCAGGAACCGCAGACTGCGAGATGCTGG
AGACCGCCGGAGGGACCGGCGGAGCGGGGGAAGACATTGACGCGGGCGCG
GGCGCAGGGGCGCGCAAGGCCGACAGGGCACGAGCAGGAGCAGAAACCCC
GGCGCAAAGGAAAGACTACGCGAGGCTGGCAGGAGAGCGTGCAACGGTGA
GATTTGAGACGCCCGGATCAGCCGAAAGGACGGGGACAGGAGGAGCGCGT
CAGAGGGGCGACGTTGGCATGAGGCATCGAGAGGGAAGAACCGATCAGGC
TAGGCAGACGGGTGTAGCATATCCGCCGTATCGATACATGACGCCCCGCA
GCGAACCCATCCCCGCTTTCGTTCACGGATTCGGAGGAAATCACGCTTCC
CGTCAACATGGAGGGAGTTCGTACAGCGGAGAGGGGTTCGGATACCGGGG
ACAGGACGGGTACGGGACAGCCGGGTTTCAAACGCGGGGCCCGCAGCCGT
GGAACGGGCAGACACAGCAGCAGGCGTACGGGGGAAGGGGCGGGGTAACG
GCAGGCGGTCAACAGATGGTAGATGGGCAAGGCGGATGGAGTGGGTTTCA
ACCGCAGCCGCAGCAGCAGCAGCAGCGACAAGCGAACCTGGGAGTTGTTC
CGCTACACGACGGCGGGGGTGGGTGGAGAAGGGACGGTAGCGGTTGGGCG
AAGGTGGTACCGGGAGAGCCGCCG
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