mRNA_H-canaliculatus_F_contig10217.234.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10217.234.1
Unique NamemRNA_H-canaliculatus_F_contig10217.234.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10217.234.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.960e-34
Identity = 69/121 (57.02%), Postives = 91/121 (75.21%), Query Frame = 1 
Query:   16 IACYAEMAHEMNDFVDIFNG--VYGRDSVEVNKKIDIQKSCITSKDSPHLDRLLGILGWFETWRRELELFSDGESTFEDAFITRESWFDMRLAILGFVSVSRFVLGDESLVKEGARRRCLF 372
            IACYAEMA ++NDFVDI NG   Y RD ++V+K+IDI+KSCITSKDSP LDRLL IL WF+TW ++L LF   +   +D F+  ++W D+RL ILGFV+++R+V GD+  V EG+R R  F
Sbjct:  470 IACYAEMARQVNDFVDIMNGKCAYNRDPIDVSKRIDIRKSCITSKDSPLLDRLLEILEWFDTWWQDLNLFGGSDLALDDLFLPDQTWDDLRLTILGFVAMTRYVFGDDDWVTEGSRGRYKF 590
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BLAST of mRNA_H-canaliculatus_F_contig10217.234.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 4.740e-21
Identity = 59/115 (51.30%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:    7 NPEIACYAEMAHEMNDFVDIFNGVYGRDSVEVNKKIDIQKSCITSKDSPHLDRLLGILGWFETWRRELELFSDGESTFEDAFITRESWFDMRLAILGFVSVSRFVLGDESLVKEG 351
            N EIACYAE+A  MNDF+DI NGVYG + VE  +  + +K  IT  DSP L RLL IL +F++W+  LE    G   + + FIT  SW DMR  ILGFV++ R+V  DE LV  G
Sbjct:  452 NGEIACYAELAEVMNDFLDIMNGVYGLNEVERKQGGNKRKGYITGADSPLLGRLLEILEFFDSWQVSLEAHF-GPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDEDLVSGG 565
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BLAST of mRNA_H-canaliculatus_F_contig10217.234.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 8.230e-20
Identity = 81/261 (31.03%), Postives = 106/261 (40.61%), Query Frame = 1 
Query:    7 NPEIACYAEMAHEMNDFVDIFNGVYGRDSVEVNKKIDIQKSCITSKDSPHLDRLLGILGWFETWRRELEL--FSDGEST---FEDAFITRESWFDMRLAILGFVSVSRFVLGDESLVKEGARRRCLFHEIGAR*VCLPHGVQPGMRTRRGKDHDCTNYDVLRSRA*CCLDAEMYN*LQVPSITDLRRPRLIPHYRLVVFLRQDICKHRLGHIRAGQGTHKSPKKEEAYGAGLRADQIRNAQQSRRRSSDRSDVSPRLDLGG 774
            N    CY  +A +MNDFVDIFNG YGR  V+          CI S +S  +DRLL IL +F+ W+  LE      GE     ++  FIT +SWFD+RL+ILGFVS+ R++  D                                                                Q+ S++   R  L P         QDIC+HR  HIRA  GTH++P   EA       D  R     RRR++ R+   P    GG
Sbjct:   43 NGAAECYQTLARQMNDFVDIFNGNYGRSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPER------------------------------------------------------------FQIDSLSPNCRRFLSPRN-----CSQDICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRN---PNARSGG 235
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BLAST of mRNA_H-canaliculatus_F_contig10217.234.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 7.080e-16
Identity = 58/150 (38.67%), Postives = 87/150 (58.00%), Query Frame = 1 
Query:   13 EIACYAEMAHEMNDFVDIFNGVYG---RDSVEVNKKIDIQKSCITSKDSPHLDRLLGILGWFETWRRELELFSDGESTFEDAFITRESWFDMRLAILGFVSVSRFVLGDESLVKE--GARRRCLFHEIGAR*VCLPHG---VQPGMRTRR 438
            E+ACYA++A  MNDF+DI NGV+    +D     +K   ++  IT  D P L RLL +L +F++W+  L     G+  +   FIT  SW DMR  ILGFV++SR++  D  LV+E  G  RR L+  + ++ + L H    ++ GM T +
Sbjct:  674 ELACYADVAEVMNDFLDIMNGVFNVLEQDRAHPQRK---KEGYITGADCPPLTRLLEVLQFFDSWQSNLRHTFGGK--WAPHFITDVSWKDMRSCILGFVAMSRYIFADRDLVEEEGGVPRRFLYPRMFSQDI-LEHRFAHIRTGMGTHK 817
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BLAST of mRNA_H-canaliculatus_F_contig10217.234.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.930e-11
Identity = 46/143 (32.17%), Postives = 73/143 (51.05%), Query Frame = 1 
Query:    4 LNPEIACYAEMAHEMNDFVDIFNGV-----------------------YGRDSVEVNKKIDIQKSCITSKDSPHLDRLLGILGWFETWRREL-ELFSDGESTFEDAFITRESWFDMRLAILGFVSVSRFVLGDESLVKEGARR 360
            L+ E+ CYA +A +M+ F+DIFNG                        +GR        +D +   I+S D   L+ L+ ++ +F+ WR  L E  + G+ T++  FIT  SW D+R+ ILGFVS+ R++  ++S  K   RR
Sbjct:  504 LDLELDCYAALAAKMDAFIDIFNGKLYIIFVLAYCLVFLKQQMWWSGNFGRSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRR 646
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BLAST of mRNA_H-canaliculatus_F_contig10217.234.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 7.420e-9
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    7 NPEIA--CYAEMAHEMNDFVDIFNGVYGRDSVEVNKKIDIQKSCITSKDSPHLDRLLGILGWFETWRRELELF----SDGESTFEDAFITRES 267
            +P++A  CY  +A  +NDFVDIFNG YGR   E   KI+  K  +TS + P L+RL+ IL +F+ W   L+ F      G+  ++  FITR S
Sbjct:  819 SPDLALGCYEGLAVHLNDFVDIFNGDYGRTKFERRAKINKMKGYVTSAEDPILERLMEILRYFDDWNDMLQEFPPPTGGGDVGWKKHFITRHS 911
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10217.234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K071_9PHAE1.960e-3457.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE4.740e-2151.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE8.230e-2031.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFP1_9PHAE7.080e-1638.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE3.930e-1132.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI7.420e-941.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10217contigH-canaliculatus_F_contig10217:10..1423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_002120.1
Exons2
Model size1179
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10217.234.1prot_H-canaliculatus_F_contig10217.234.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10217 43..637 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928650.4310138-UTR-H-canaliculatus_F_contig10217:9..421622928650.4310138-UTR-H-canaliculatus_F_contig10217:9..42Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10217 10..42 +
1696845513.757612-UTR-H-canaliculatus_F_contig10217:9..421696845513.757612-UTR-H-canaliculatus_F_contig10217:9..42Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10217 10..42 +
1622928650.4680223-UTR-H-canaliculatus_F_contig10217:637..14231622928650.4680223-UTR-H-canaliculatus_F_contig10217:637..1423Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10217 638..1423 +
1696845513.7910075-UTR-H-canaliculatus_F_contig10217:637..14231696845513.7910075-UTR-H-canaliculatus_F_contig10217:637..1423Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10217 638..1423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928650.4413354-CDS-H-canaliculatus_F_contig10217:42..821622928650.4413354-CDS-H-canaliculatus_F_contig10217:42..82Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10217 43..82 +
1696845513.7693827-CDS-H-canaliculatus_F_contig10217:42..821696845513.7693827-CDS-H-canaliculatus_F_contig10217:42..82Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10217 43..82 +
1622928650.458404-CDS-H-canaliculatus_F_contig10217:317..6371622928650.458404-CDS-H-canaliculatus_F_contig10217:317..637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10217 318..637 +
1696845513.7816577-CDS-H-canaliculatus_F_contig10217:317..6371696845513.7816577-CDS-H-canaliculatus_F_contig10217:317..637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10217 318..637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10217.234.1

>prot_H-canaliculatus_F_contig10217.234.1 ID=prot_H-canaliculatus_F_contig10217.234.1|Name=mRNA_H-canaliculatus_F_contig10217.234.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=120bp
MAHEMNDFVDIFNGVYGRDSVEVNKKIDIQKSCITSKDSPHLDRLLGILG
WFETWRRELELFSDGESTFEDAFITRESWFDMRLAILGFVSVSRFVLGDE
SLVKEGARRRCLFHEIGAR*
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mRNA from alignment at H-canaliculatus_F_contig10217:10..1423+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10217.234.1 ID=mRNA_H-canaliculatus_F_contig10217.234.1|Name=mRNA_H-canaliculatus_F_contig10217.234.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1414bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10217:10..1423+ (Hapterophycus canaliculatus Oshoro5f female)
AAGCTGAACCCCGAGATAGCCTGTTATGCGGAGATGGCTCACGAAATGAA
TGACTTCGTCGACATTTTCAACGGTTAGTTACGGGCGCGTAGGGGAGGAT
GGTAACACCGGTGTATCGTGAGATAGTGTACACGACACTGCAACGGTTCA
GAACGTATCCAAGTCGAACGCGACGTGGCATAACACCTCTGGTTCTTGAC
TCGAAAGTTTGGGTCGCTGGCATGGAGCGGAGCTAGCCGATAACCATCTC
GCCTCAATCCGAGCCTGATCCGTTGGTTGTTCAATTGCGTGACCGACATG
AACGGCAGGTGTGTACGGGCGGGACAGTGTCGAAGTAAATAAAAAGATCG
ACATCCAGAAGAGTTGCATCACCTCGAAGGACAGCCCCCACCTCGACCGA
CTGTTGGGGATTCTAGGGTGGTTCGAAACATGGCGGAGGGAGTTGGAGCT
TTTTTCGGACGGCGAAAGTACCTTCGAAGACGCGTTCATCACGCGGGAGT
CGTGGTTTGACATGCGACTCGCGATTCTTGGCTTCGTCTCCGTGAGTCGC
TTTGTACTTGGAGACGAATCGCTTGTAAAGGAAGGCGCGCGGCGCCGCTG
CCTCTTCCACGAGATTGGAGCCAGGTAAGTTTGTCTCCCGCATGGAGTGC
AACCCGGAATGCGCACAAGAAGGGGTAAGGACCACGACTGCACGAACTAC
GATGTCCTACGCTCCCGCGCGTAATGCTGCCTTGATGCAGAAATGTATAA
CTAGCTGCAAGTTCCAAGCATCACAGACCTTCGCCGGCCGCGTCTTATTC
CTCATTACCGTCTCGTGGTTTTCTTGCGACAGGATATTTGCAAACACAGA
CTCGGCCACATCCGGGCGGGGCAGGGAACGCACAAGAGCCCTAAAAAGGA
GGAGGCATATGGGGCGGGTTTGAGGGCGGATCAAATTAGAAATGCGCAGC
AGTCGAGACGCCGCAGCTCTGACAGGAGCGATGTCTCGCCACGTCTTGAC
CTTGGTGGAACTGCAGCGTTTGCTACTATGCCGGTCGGTGCGAAGCAACG
TAACGACCCGATGAGGGCTGAAAGATCGGATAGGGCGGATTACGTCTTTG
AGCCCAGGAGCTGAAGGCGTTAAGTTGACGAAGCTAGTGACGTAAAAGCA
AACGTCGAGGGGCCCTCAATGGGCGCGTCGATTTTTGCCGGGCCAGGAGC
AGCATATATATATAGTAGGTGATTGTTTATTTCAGGCGTGATGCTTTTTG
GACCAGAGTAGTTCGAGCGCCGCTTTTTAGTTATTGACCCCGTAAACACT
ATGAGCTACGGTCGCCATTTTTTTTGCTGCGATGACAAAAAATAAACTCC
CGAGCGTTTCCGATTTTTTATAAGAGCGGCCAGCATCCCCTTCCTTTTGT
CTCGGATGGCAAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10217:10..1423+

>mRNA_H-canaliculatus_F_contig10217.234.1 ID=mRNA_H-canaliculatus_F_contig10217.234.1|Name=mRNA_H-canaliculatus_F_contig10217.234.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10217:10..1423+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTCACGAAATGAATGACTTCGTCGACATTTTCAACGATGGCTCACG
AAATGAATGACTTCGTCGACATTTTCAACGGTGTGTACGGGCGGGACAGT
GTCGAAGTAAATAAAAAGATCGACATCCAGAAGAGTTGCATCACCTCGAA
GGACAGCCCCCACCTCGACCGACTGTTGGGGATTCTAGGGTGGTTCGAAA
CATGGCGGAGGGAGTTGGAGCTTTTTTCGGACGGCGAAAGTACCTTCGAA
GACGCGTTCATCACGCGGGAGTCGTGGTTTGACATGCGACTCGCGATTCT
TGGCTTCGTCTCCGTGAGTCGCTTTGTACTTGGAGACGAATCGCTTGTAA
AGGAAGGCGCGCGGCGCCGCTGCCTCTTCCACGAGATTGGAGCCAGGTAA
GTGTGTACGGGCGGGACAGTGTCGAAGTAAATAAAAAGATCGACATCCAG
AAGAGTTGCATCACCTCGAAGGACAGCCCCCACCTCGACCGACTGTTGGG
GATTCTAGGGTGGTTCGAAACATGGCGGAGGGAGTTGGAGCTTTTTTCGG
ACGGCGAAAGTACCTTCGAAGACGCGTTCATCACGCGGGAGTCGTGGTTT
GACATGCGACTCGCGATTCTTGGCTTCGTCTCCGTGAGTCGCTTTGTACT
TGGAGACGAATCGCTTGTAAAGGAAGGCGCGCGGCGCCGCTGCCTCTTCC
ACGAGATTGGAGCCAGGTAA
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