mRNA_H-canaliculatus_F_contig10217.235.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10217.235.1
Unique NamemRNA_H-canaliculatus_F_contig10217.235.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10217.235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10217contigH-canaliculatus_F_contig10217:1942..2508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size568
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928650.3851736-CDS-H-canaliculatus_F_contig10217:1941..23191622928650.3851736-CDS-H-canaliculatus_F_contig10217:1941..2319Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10217 1942..2319 +
1696845513.7262797-CDS-H-canaliculatus_F_contig10217:1941..23191696845513.7262797-CDS-H-canaliculatus_F_contig10217:1941..2319Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10217 1942..2319 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928650.3957589-UTR-H-canaliculatus_F_contig10217:2319..25081622928650.3957589-UTR-H-canaliculatus_F_contig10217:2319..2508Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10217 2320..2508 +
1696845513.7444713-UTR-H-canaliculatus_F_contig10217:2319..25081696845513.7444713-UTR-H-canaliculatus_F_contig10217:2319..2508Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10217 2320..2508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10217.235.1prot_H-canaliculatus_F_contig10217.235.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10217 1942..2319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10217.235.1

>prot_H-canaliculatus_F_contig10217.235.1 ID=prot_H-canaliculatus_F_contig10217.235.1|Name=mRNA_H-canaliculatus_F_contig10217.235.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=126bp
NKLQLERDSATRETRPKYIEVVDGNDLFFSRRVGGLFQLAMAFTTTMSRI
SPLLYALPPIPWCLKKDAKARLVVFPGSSGGSTPIPGATPRKIDCNFVLS
KADRATPPHSLMLAISSDFESFRKA*
back to top

mRNA from alignment at H-canaliculatus_F_contig10217:1942..2508+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10217.235.1 ID=mRNA_H-canaliculatus_F_contig10217.235.1|Name=mRNA_H-canaliculatus_F_contig10217.235.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=567bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10217:1942..2508+ (Hapterophycus canaliculatus Oshoro5f female)
AATAAGCTGCAACTAGAGCGTGATTCGGCTACTCGCGAAACGCGACCAAA
ATATATTGAGGTTGTCGATGGAAACGACTTGTTTTTTTCCCGCCGCGTCG
GCGGACTCTTTCAACTGGCCATGGCGTTCACCACGACCATGTCGAGGATC
TCCCCTCTACTCTACGCCCTCCCTCCCATACCGTGGTGCCTCAAGAAAGA
CGCCAAAGCACGCTTGGTCGTGTTCCCCGGTTCCTCCGGAGGATCTACGC
CGATCCCAGGCGCAACGCCCCGCAAGATCGACTGTAATTTCGTTTTGTCC
AAAGCAGACCGAGCAACACCTCCGCACTCCTTGATGTTAGCAATAAGCTC
GGACTTCGAAAGCTTCCGAAAGGCATGAGCCCCAAAATGGTTGGCAAGCT
GAACGCGAGTCTCCAACTGTTCAGGTGTTGGCTCAGGTGGTTTCTGCCCG
CTTGACGCGCTCTTACCCGATCGAACCTTGTCCCTAAGGGCCCGATTGTC
GCTCGTGTTGAGCTGGTCTCTGAGTGCGCGCGTATCCTTCTTGGCTTGCT
TCATGTGTGACTGAACT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10217:1942..2508+

>mRNA_H-canaliculatus_F_contig10217.235.1 ID=mRNA_H-canaliculatus_F_contig10217.235.1|Name=mRNA_H-canaliculatus_F_contig10217.235.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10217:1942..2508+ (Hapterophycus canaliculatus Oshoro5f female)
AATAAGCTGCAACTAGAGCGTGATTCGGCTACTCGCGAAACGCGACCAAA
ATATATTGAGGTTGTCGATGGAAACGACTTGTTTTTTTCCCGCCGCGTCG
GCGGACTCTTTCAACTGGCCATGGCGTTCACCACGACCATGTCGAGGATC
TCCCCTCTACTCTACGCCCTCCCTCCCATACCGTGGTGCCTCAAGAAAGA
CGCCAAAGCACGCTTGGTCGTGTTCCCCGGTTCCTCCGGAGGATCTACGC
CGATCCCAGGCGCAACGCCCCGCAAGATCGACTGTAATTTCGTTTTGTCC
AAAGCAGACCGAGCAACACCTCCGCACTCCTTGATGTTAGCAATAAGCTC
GGACTTCGAAAGCTTCCGAAAGGCATGAAATAAGCTGCAACTAGAGCGTG
ATTCGGCTACTCGCGAAACGCGACCAAAATATATTGAGGTTGTCGATGGA
AACGACTTGTTTTTTTCCCGCCGCGTCGGCGGACTCTTTCAACTGGCCAT
GGCGTTCACCACGACCATGTCGAGGATCTCCCCTCTACTCTACGCCCTCC
CTCCCATACCGTGGTGCCTCAAGAAAGACGCCAAAGCACGCTTGGTCGTG
TTCCCCGGTTCCTCCGGAGGATCTACGCCGATCCCAGGCGCAACGCCCCG
CAAGATCGACTGTAATTTCGTTTTGTCCAAAGCAGACCGAGCAACACCTC
CGCACTCCTTGATGTTAGCAATAAGCTCGGACTTCGAAAGCTTCCGAAAG
GCATGA
back to top