mRNA_H-canaliculatus_F_contig12800.2333.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12800.2333.1
Unique NamemRNA_H-canaliculatus_F_contig12800.2333.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12800.2333.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 9.630e-28
Identity = 83/113 (73.45%), Postives = 87/113 (76.99%), Query Frame = 1 
Query:    1 MWAVTGHGWSFGLSHALSCVLLLASLSSNQHTFLPEVWLFARKREQSAPHXXXXXXXXXXXXXXXXXXXXXXXXXXDSSDSG-GAPDTPWWARGQGAAIEALLAEEESREKAA 336
            MWAVTG GW +GLSHALSCVLLLASLSSNQH FLPEVWLFARKREQSAPH XXXXXXXXXXXXXXXXXX        + D G G  D  WW  GQGAAIEALL  + SR + A
Sbjct: 2251 MWAVTGEGWPYGLSHALSCVLLLASLSSNQHAFLPEVWLFARKREQSAPHHXXXXXXXXXXXXXXXXXXSPA-----AGDGGAGVSDDRWWTMGQGAAIEALLTRDVSRRQVA 2358
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BLAST of mRNA_H-canaliculatus_F_contig12800.2333.1 vs. uniprot
Match: A0A6H5KDH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH8_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 5.970e-27
Identity = 76/112 (67.86%), Postives = 81/112 (72.32%), Query Frame = 1 
Query:    1 MWAVTGHGWSFGLSHALSCVLLLASLSSNQHTFLPEVWLFARKREQSAPHXXXXXXXXXXXXXXXXXXXXXXXXXXDSSDSGGAPDTPWWARGQGAAIEALLAEEESREKAA 336
            MWAVTG GW +GLSHALSCVLLLASLSSNQH  LPEVWLFARKREQSAPH     XXXXXXXXXXXXXX             G  D  WW  GQGAAIEALLA +++R + A
Sbjct:  402 MWAVTGDGWPYGLSHALSCVLLLASLSSNQHALLPEVWLFARKREQSAPHQRHRHXXXXXXXXXXXXXXG----------GAGVSDARWWTMGQGAAIEALLARDKTRRQVA 503
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BLAST of mRNA_H-canaliculatus_F_contig12800.2333.1 vs. uniprot
Match: A0A835YSR2_9STRA (RIC1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.120e-7
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 MWAVTGHGWSFGLSHALSCVLLLASLSS-NQHTFLPEVWLFARKREQSA 144
            M  +TG  WS GLSHAL C LLL  L + + H  LPEVWLFA KRE+SA
Sbjct:  935 MLPLTGAEWSHGLSHALCCCLLLRCLEAPHTHALLPEVWLFACKRERSA 983
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12800.2333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LB77_ECTSI9.630e-2873.45SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KDH8_9PHAE5.970e-2767.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSR2_9STRA3.120e-761.22RIC1 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12800contigH-canaliculatus_F_contig12800:935..1985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue3.1e-24
Seed eggNOG ortholog2880.D8LB77
KEGG koko:K20476
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2006@1,KOG2006@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categorysignal peptide
Exons2
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.1333373-CDS-H-canaliculatus_F_contig12800:934..11801622929003.1333373-CDS-H-canaliculatus_F_contig12800:934..1180Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12800 935..1180 -
1696845646.0120032-CDS-H-canaliculatus_F_contig12800:934..11801696845646.0120032-CDS-H-canaliculatus_F_contig12800:934..1180Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12800 935..1180 -
1622929003.1467402-CDS-H-canaliculatus_F_contig12800:1895..19851622929003.1467402-CDS-H-canaliculatus_F_contig12800:1895..1985Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12800 1896..1985 -
1696845646.0269814-CDS-H-canaliculatus_F_contig12800:1895..19851696845646.0269814-CDS-H-canaliculatus_F_contig12800:1895..1985Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12800 1896..1985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12800.2333.1prot_H-canaliculatus_F_contig12800.2333.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12800 935..1985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12800.2333.1

>prot_H-canaliculatus_F_contig12800.2333.1 ID=prot_H-canaliculatus_F_contig12800.2333.1|Name=mRNA_H-canaliculatus_F_contig12800.2333.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
MWAVTGHGWSFGLSHALSCVLLLASLSSNQHTFLPEVWLFARKREQSAPH
HHQHLRTRSSSSTSTAAAAAAASGAADSSDSGGAPDTPWWARGQGAAIEA
LLAEEESREKAA
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mRNA from alignment at H-canaliculatus_F_contig12800:935..1985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12800.2333.1 ID=mRNA_H-canaliculatus_F_contig12800.2333.1|Name=mRNA_H-canaliculatus_F_contig12800.2333.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1051bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12800:935..1985- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGGCGGTGACGGGGCACGGGTGGTCGTTTGGGCTCAGCCACGCCCT
CTCCTGCGTTCTACTTCTCGCGAGCCTCTCTTCGAACCAGGTATGCAGAA
TACGAGAGTTTTTTACGAGCACTTGGACGCAGGAGGAGCACCCTCTGGAG
GGTAAAGTTACTGCTTGCTTTCAGGTTTGTTGTTGTTGTTGTTGTTGTTG
TTGTCTTGATGGGGGCTGCTCGTTGAGCGGTTTGTGGTTCTTGAGGCCGC
TTGGTCGAGACCGGTCGTTGGCAATGGAGGACGAGCAGCCTCGCTCGTTG
TGCGTGTTGGGAAAGACGGCTGTCTCGATAAGAAACGTTTATACAAGCGT
ACCTGGTACGTAAGGAGCACGGCCTCTCCTCTCGATTATTCCTGTAACCG
TTCCTCGCGCATCACCACACAGTTTCTAGTGAGGTCGATTTCACGGTCGA
ATCGCGCAAGGAGAGGTGATGCCCAAGGTAGAAAATATCCCTCTGTGGCC
ACGGCTTAACTCTCTTACCCTCCTTGGACGACGTTGCAAGAGATCGGGGG
TGCGCAGCAGTCCTCGCTGTAATTTTCTCCAGCTGTTGCTCGGTCGGAAG
CCGCGTGCAAGCAGTGGTGTACAAGGTGTCCTCTCTCTGGGTGAAGATAA
CGAATCTGTGGGTGGCGTACCGCGCGTAGAGATCGAGTCCGCCCCGCGCT
TGAGTCAACACACGGAGCCCCTTATCCCGTACGCTTGCATCTCGTAACAC
ATGTTGCCCAACCCGGCCCCGGCCGATACCCCCCCCCCCCCCGCCTACCC
TTCAGCACACCTTCCTCCCCGAGGTGTGGCTCTTCGCTCGCAAGCGCGAG
CAGTCCGCGCCCCACCACCACCAGCACCTCCGCACCAGGAGTAGCTCTTC
CACCTCGACGGCGGCAGCGGCAGCGGCAGCTTCGGGGGCCGCAGACAGCA
GCGACAGCGGCGGCGCCCCGGACACCCCTTGGTGGGCGAGGGGGCAAGGC
GCCGCGATCGAGGCTCTCCTCGCGGAGGAGGAGTCGAGGGAGAAGGCCGC
C
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12800:935..1985-

>mRNA_H-canaliculatus_F_contig12800.2333.1 ID=mRNA_H-canaliculatus_F_contig12800.2333.1|Name=mRNA_H-canaliculatus_F_contig12800.2333.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12800:935..1985- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGGCGGTGACGGGGCACGGGTGGTCGTTTGGGCTCAGCCACGCCCT
CTCCTGCGTTCTACTTCTCGCGAGCCTCTCTTCGAACCAGATGTGGGCGG
TGACGGGGCACGGGTGGTCGTTTGGGCTCAGCCACGCCCTCTCCTGCGTT
CTACTTCTCGCGAGCCTCTCTTCGAACCAGCACACCTTCCTCCCCGAGGT
GTGGCTCTTCGCTCGCAAGCGCGAGCAGTCCGCGCCCCACCACCACCAGC
ACCTCCGCACCAGGAGTAGCTCTTCCACCTCGACGGCGGCAGCGGCAGCG
GCAGCTTCGGGGGCCGCAGACAGCAGCGACAGCGGCGGCGCCCCGGACAC
CCCTTGGTGGGCGAGGGGGCAAGGCGCCGCGATCGAGGCTCTCCTCGCGG
AGGAGGAGTCGAGGGAGAAGGCCGCCCACACCTTCCTCCCCGAGGTGTGG
CTCTTCGCTCGCAAGCGCGAGCAGTCCGCGCCCCACCACCACCAGCACCT
CCGCACCAGGAGTAGCTCTTCCACCTCGACGGCGGCAGCGGCAGCGGCAG
CTTCGGGGGCCGCAGACAGCAGCGACAGCGGCGGCGCCCCGGACACCCCT
TGGTGGGCGAGGGGGCAAGGCGCCGCGATCGAGGCTCTCCTCGCGGAGGA
GGAGTCGAGGGAGAAGGCCGCC
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