prot_H-canaliculatus_F_contig12800.2333.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig12800.2333.1
Unique Nameprot_H-canaliculatus_F_contig12800.2333.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length112
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12800.2333.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 9.630e-28
Identity = 83/113 (73.45%), Postives = 87/113 (76.99%), Query Frame = 0 
Query:    1 MWAVTGHGWSFGLSHALSCVLLLASLSSNQHTFLPEVWLFARKREQSAPHXXXXXXXXXXXXXXXXXXXXXXXXXXDSSDSG-GAPDTPWWARGQGAAIEALLAEEESREKAA 112
            MWAVTG GW +GLSHALSCVLLLASLSSNQH FLPEVWLFARKREQSAPH XXXXXXXXXXXXXXXXXX        + D G G  D  WW  GQGAAIEALL  + SR + A
Sbjct: 2251 MWAVTGEGWPYGLSHALSCVLLLASLSSNQHAFLPEVWLFARKREQSAPHHXXXXXXXXXXXXXXXXXXSPA-----AGDGGAGVSDDRWWTMGQGAAIEALLTRDVSRRQVA 2358
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BLAST of mRNA_H-canaliculatus_F_contig12800.2333.1 vs. uniprot
Match: A0A6H5KDH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH8_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 5.970e-27
Identity = 76/112 (67.86%), Postives = 81/112 (72.32%), Query Frame = 0 
Query:    1 MWAVTGHGWSFGLSHALSCVLLLASLSSNQHTFLPEVWLFARKREQSAPHXXXXXXXXXXXXXXXXXXXXXXXXXXDSSDSGGAPDTPWWARGQGAAIEALLAEEESREKAA 112
            MWAVTG GW +GLSHALSCVLLLASLSSNQH  LPEVWLFARKREQSAPH     XXXXXXXXXXXXXX             G  D  WW  GQGAAIEALLA +++R + A
Sbjct:  402 MWAVTGDGWPYGLSHALSCVLLLASLSSNQHALLPEVWLFARKREQSAPHQRHRHXXXXXXXXXXXXXXG----------GAGVSDARWWTMGQGAAIEALLARDKTRRQVA 503
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BLAST of mRNA_H-canaliculatus_F_contig12800.2333.1 vs. uniprot
Match: A0A835YSR2_9STRA (RIC1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.120e-7
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0 
Query:    1 MWAVTGHGWSFGLSHALSCVLLLASLSS-NQHTFLPEVWLFARKREQSA 48
            M  +TG  WS GLSHAL C LLL  L + + H  LPEVWLFA KRE+SA
Sbjct:  935 MLPLTGAEWSHGLSHALCCCLLLRCLEAPHTHALLPEVWLFACKRERSA 983
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12800.2333.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LB77_ECTSI9.630e-2873.45SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KDH8_9PHAE5.970e-2767.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSR2_9STRA3.120e-761.22RIC1 domain-containing protein n=1 Tax=Tribonema m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..112
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..29
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.721

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12800contigH-canaliculatus_F_contig12800:935..1985 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12800.2333.1mRNA_H-canaliculatus_F_contig12800.2333.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig12800 935..1985 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig12800.2333.1 ID=prot_H-canaliculatus_F_contig12800.2333.1|Name=mRNA_H-canaliculatus_F_contig12800.2333.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
MWAVTGHGWSFGLSHALSCVLLLASLSSNQHTFLPEVWLFARKREQSAPH
HHQHLRTRSSSSTSTAAAAAAASGAADSSDSGGAPDTPWWARGQGAAIEA
LLAEEESREKAA
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