mRNA_H-canaliculatus_F_contig10216.233.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10216.233.1
Unique NamemRNA_H-canaliculatus_F_contig10216.233.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10216.233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10216contigH-canaliculatus_F_contig10216:228..1892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1124
Cds size1122
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928650.3433177-CDS-H-canaliculatus_F_contig10216:227..7371622928650.3433177-CDS-H-canaliculatus_F_contig10216:227..737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10216 228..737 +
1696845513.6988807-CDS-H-canaliculatus_F_contig10216:227..7371696845513.6988807-CDS-H-canaliculatus_F_contig10216:227..737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10216 228..737 +
1622928650.353793-CDS-H-canaliculatus_F_contig10216:1279..18911622928650.353793-CDS-H-canaliculatus_F_contig10216:1279..1891Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10216 1280..1891 +
1696845513.7092075-CDS-H-canaliculatus_F_contig10216:1279..18911696845513.7092075-CDS-H-canaliculatus_F_contig10216:1279..1891Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10216 1280..1891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10216.233.1prot_H-canaliculatus_F_contig10216.233.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10216 228..1891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10216.233.1

>prot_H-canaliculatus_F_contig10216.233.1 ID=prot_H-canaliculatus_F_contig10216.233.1|Name=mRNA_H-canaliculatus_F_contig10216.233.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=374bp
ASAPTAAGDERAPWQPSPPKGSPPAPSSSPRKDLGTSPLASASGQQSAVL
PSSRRRQATRRRRRASNGTASAAPEASTEAGAGAQSAAGRAQQGRRRRGT
RAVVVEEAAPAVKVTAEASAAEERADVGERAGTGLAKELAAAVLSSLPLV
PFPSELAEIAGRPAAAPSQEGQMEQDERKLDTRQQEALFWPDLKVGMPEA
DSELVPEAAGTSADGSGPIDEATAVAAAQGDSGDSTSGCESEGLANDELE
RPTAEVEATLPEEPQGAALASGDGLDGGHAAADPASAPADADADADAADQ
ADPTTAVPGGEGVSAFEGLPTTATGGNHAHAGLPQGETDGQERDASAGGS
AAAGVGVGPTKDGAGAERIENGGA
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mRNA from alignment at H-canaliculatus_F_contig10216:228..1892+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10216.233.1 ID=mRNA_H-canaliculatus_F_contig10216.233.1|Name=mRNA_H-canaliculatus_F_contig10216.233.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1665bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10216:228..1892+ (Hapterophycus canaliculatus Oshoro5f female)
GCTTCCGCGCCCACGGCTGCTGGTGACGAGCGAGCCCCTTGGCAGCCTTC
GCCTCCAAAGGGTTCGCCTCCTGCCCCTTCTTCGTCTCCGCGGAAGGACC
TCGGGACCTCTCCCCTTGCCTCCGCCAGCGGTCAGCAGTCTGCCGTACTG
CCATCGTCCCGACGGCGACAGGCGACGAGAAGACGGAGAAGAGCCAGCAA
CGGCACCGCCTCTGCGGCTCCGGAGGCGTCGACGGAGGCGGGGGCAGGTG
CACAGTCGGCGGCGGGGCGTGCGCAGCAAGGGCGGAGACGGCGCGGTACT
CGCGCGGTGGTCGTCGAAGAAGCGGCGCCTGCGGTGAAGGTGACTGCGGA
AGCGAGTGCGGCGGAAGAGAGGGCCGACGTGGGAGAGAGGGCCGGCACGG
GGCTCGCCAAGGAGCTCGCGGCGGCGGTTCTGTCGTCTCTGCCGCTGGTT
CCCTTCCCTTCTGAGCTCGCGGAGATAGCGGGGAGGCCTGCCGCGGCGCC
GTCGCAGGAGGTGAGAACGGGGAGCTCGGATGCTCGTCCTCGGAGTAGCA
TAGCATGGCACCACTTCCGGCGTGGACGCGGTCGTAGTGTTAGGGCTTGG
CGCCGCCTCCCGCTGTGGGTGAAGCGTTTTGGTAAAACGTAACGTAGTTT
GTTTTCGTCAAGGGAAAGAACGCAGATTCCTGGTGTTTGTTGCATGGTTG
GCCTGCCCCTCGGATGGTTCTGGACCGAACTCTAGCGTTAAGGGTGGTGG
TACGCAGTCCGGGGTTGCCGGAATATGTTGAGCGCTTGGGTTTCGGGCCA
ACGAAAGGACTCCGCCATTCGCACGGCGGTGTTGGACAGTCGAAGTGGTC
TCTTGTGATGAACCGCCCGGCGATGTTGTATCGACGCCCGCGTCTCCTGT
GTTTCATCGACCCCTTCCACGGCCTTTGTTCGGAAGCACGATTTTTTTTC
TCCAAATCCGGTGATGGCGGCCGCGGCACGCTCGAAAAAGGCAGCAGCCA
TGCAGAATCCCTCACTCGTACGCATCTCTTTGTTGCACGCGGCGTGCTGC
AGGGTCAAATGGAGCAGGACGAGCGCAAGCTCGACACGAGGCAACAAGAG
GCTCTGTTTTGGCCGGACCTGAAGGTCGGGATGCCGGAGGCGGACTCAGA
ACTCGTGCCGGAGGCAGCGGGGACGTCCGCCGACGGCAGCGGCCCTATCG
ACGAAGCGACGGCCGTGGCGGCTGCCCAGGGCGACAGCGGTGACAGCACC
AGCGGTTGCGAGAGTGAGGGCCTGGCGAACGACGAGCTGGAGCGGCCGAC
GGCCGAAGTCGAGGCGACGTTACCGGAAGAGCCGCAGGGGGCCGCGTTGG
CGAGCGGGGACGGTTTGGATGGCGGTCACGCTGCTGCGGACCCGGCTTCG
GCTCCCGCCGACGCCGATGCCGACGCCGACGCTGCGGACCAGGCTGACCC
TACCACGGCCGTGCCCGGTGGAGAGGGCGTGTCTGCTTTCGAAGGGCTTC
CTACGACGGCGACCGGCGGCAATCACGCCCACGCTGGCCTTCCCCAAGGA
GAAACAGATGGCCAAGAGCGAGATGCTAGCGCTGGGGGTAGTGCTGCTGC
TGGTGTAGGCGTCGGGCCGACGAAGGACGGCGCCGGGGCCGAACGGATCG
AGAACGGCGGGGCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10216:228..1892+

>mRNA_H-canaliculatus_F_contig10216.233.1 ID=mRNA_H-canaliculatus_F_contig10216.233.1|Name=mRNA_H-canaliculatus_F_contig10216.233.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2244bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10216:228..1892+ (Hapterophycus canaliculatus Oshoro5f female)
GCTTCCGCGCCCACGGCTGCTGGTGACGAGCGAGCCCCTTGGCAGCCTTC
GCCTCCAAAGGGTTCGCCTCCTGCCCCTTCTTCGTCTCCGCGGAAGGACC
TCGGGACCTCTCCCCTTGCCTCCGCCAGCGGTCAGCAGTCTGCCGTACTG
CCATCGTCCCGACGGCGACAGGCGACGAGAAGACGGAGAAGAGCCAGCAA
CGGCACCGCCTCTGCGGCTCCGGAGGCGTCGACGGAGGCGGGGGCAGGTG
CACAGTCGGCGGCGGGGCGTGCGCAGCAAGGGCGGAGACGGCGCGGTACT
CGCGCGGTGGTCGTCGAAGAAGCGGCGCCTGCGGTGAAGGTGACTGCGGA
AGCGAGTGCGGCGGAAGAGAGGGCCGACGTGGGAGAGAGGGCCGGCACGG
GGCTCGCCAAGGAGCTCGCGGCGGCGGTTCTGTCGTCTCTGCCGCTGGTT
CCCTTCCCTTCTGAGCTCGCGGAGATAGCGGGGAGGCCTGCCGCGGCGCC
GTCGCAGGAGGCTTCCGCGCCCACGGCTGCTGGTGACGAGCGAGCCCCTT
GGCAGCCTTCGCCTCCAAAGGGTTCGCCTCCTGCCCCTTCTTCGTCTCCG
CGGAAGGACCTCGGGACCTCTCCCCTTGCCTCCGCCAGCGGTCAGCAGTC
TGCCGTACTGCCATCGTCCCGACGGCGACAGGCGACGAGAAGACGGAGAA
GAGCCAGCAACGGCACCGCCTCTGCGGCTCCGGAGGCGTCGACGGAGGCG
GGGGCAGGTGCACAGTCGGCGGCGGGGCGTGCGCAGCAAGGGCGGAGACG
GCGCGGTACTCGCGCGGTGGTCGTCGAAGAAGCGGCGCCTGCGGTGAAGG
TGACTGCGGAAGCGAGTGCGGCGGAAGAGAGGGCCGACGTGGGAGAGAGG
GCCGGCACGGGGCTCGCCAAGGAGCTCGCGGCGGCGGTTCTGTCGTCTCT
GCCGCTGGTTCCCTTCCCTTCTGAGCTCGCGGAGATAGCGGGGAGGCCTG
CCGCGGCGCCGTCGCAGGAGGGTCAAATGGAGCAGGACGAGCGCAAGCTC
GACACGAGGCAACAAGAGGCTCTGTTTTGGCCGGACCTGAAGGTCGGGAT
GCCGGAGGCGGACTCAGAACTCGTGCCGGAGGCAGCGGGGACGTCCGCCG
ACGGCAGCGGCCCTATCGACGAAGCGACGGCCGTGGCGGCTGCCCAGGGC
GACAGCGGTGACAGCACCAGCGGTTGCGAGAGTGAGGGCCTGGCGAACGA
CGAGCTGGAGCGGCCGACGGCCGAAGTCGAGGCGACGTTACCGGAAGAGC
CGCAGGGGGCCGCGTTGGCGAGCGGGGACGGTTTGGATGGCGGTCACGCT
GCTGCGGACCCGGCTTCGGCTCCCGCCGACGCCGATGCCGACGCCGACGC
TGCGGACCAGGCTGACCCTACCACGGCCGTGCCCGGTGGAGAGGGCGTGT
CTGCTTTCGAAGGGCTTCCTACGACGGCGACCGGCGGCAATCACGCCCAC
GCTGGCCTTCCCCAAGGAGAAACAGATGGCCAAGAGCGAGATGCTAGCGC
TGGGGGTAGTGCTGCTGCTGGTGTAGGCGTCGGGCCGACGAAGGACGGCG
CCGGGGCCGAACGGATCGAGAACGGCGGGGCTGGTCAAATGGAGCAGGAC
GAGCGCAAGCTCGACACGAGGCAACAAGAGGCTCTGTTTTGGCCGGACCT
GAAGGTCGGGATGCCGGAGGCGGACTCAGAACTCGTGCCGGAGGCAGCGG
GGACGTCCGCCGACGGCAGCGGCCCTATCGACGAAGCGACGGCCGTGGCG
GCTGCCCAGGGCGACAGCGGTGACAGCACCAGCGGTTGCGAGAGTGAGGG
CCTGGCGAACGACGAGCTGGAGCGGCCGACGGCCGAAGTCGAGGCGACGT
TACCGGAAGAGCCGCAGGGGGCCGCGTTGGCGAGCGGGGACGGTTTGGAT
GGCGGTCACGCTGCTGCGGACCCGGCTTCGGCTCCCGCCGACGCCGATGC
CGACGCCGACGCTGCGGACCAGGCTGACCCTACCACGGCCGTGCCCGGTG
GAGAGGGCGTGTCTGCTTTCGAAGGGCTTCCTACGACGGCGACCGGCGGC
AATCACGCCCACGCTGGCCTTCCCCAAGGAGAAACAGATGGCCAAGAGCG
AGATGCTAGCGCTGGGGGTAGTGCTGCTGCTGGTGTAGGCGTCGGGCCGA
CGAAGGACGGCGCCGGGGCCGAACGGATCGAGAACGGCGGGGCT
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