mRNA_H-canaliculatus_F_contig10213.232.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10213.232.1
Unique NamemRNA_H-canaliculatus_F_contig10213.232.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Match: D7G4Q7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q7_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.020e-23
Identity = 57/72 (79.17%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    1 MGASDAVSEEDLAPLVAAAKKARAAGSTAPQVQKLLAAVDEDRIGTHAAGARERVVAALDTTLADINDSATK 216
            +GA  AVSEEDLAPLV AAKKARAAGSTAPQVQ+LL AVDED+IGT+A G +ERVVAA +TTLADI+D+ATK
Sbjct:  840 IGAPAAVSEEDLAPLVLAAKKARAAGSTAPQVQQLLGAVDEDKIGTYAIGVKERVVAASETTLADIDDAATK 911
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BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Match: A0A6H5KSC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.180e-20
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 MGASDAVSEEDLAPLVAAAKKARAAGSTAPQVQKLLAAVDEDRIGTHAAGARERVVAALDTTLADINDSATK 216
            +G   AVSEEDL PLV AA+  R AG  +  VQKLLAAVDED+IGTHA GA++RVVAA++TTLADINDSATK
Sbjct:   23 LGVQAAVSEEDLVPLVKAAEFVRVAGGWSRMVQKLLAAVDEDQIGTHAVGAKDRVVAAVETTLADINDSATK 94
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BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Match: D7G0G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G6_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 8.370e-20
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 MGASDAVSEEDLAPLVAAAKKARAAGSTAPQVQKLLAAVDEDRIGTHAAGARERVVAALDTTLADINDSA 210
            +G   AVSE+ LAPLV+AAK+AR AGST+P+ Q+LLAAVDED+IG HA GA++RVVAA++TTLADIND+A
Sbjct:  363 LGVPAAVSEKYLAPLVSAAKEARLAGSTSPKAQELLAAVDEDQIGAHAVGAKDRVVAAVETTLADINDAA 432
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BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Match: A0A6H5KNS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNS5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.150e-19
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:   16 AVSEEDLAPLVAAAKKARAAGSTAPQVQK---------LLAAVDEDRIGTHAAGARERVVAALDTTLADINDSATK 216
            AVSEEDLAPLV AAKKARAAGSTAPQV K         LL AVDED+IGT+A GA++RVVAA +TTLADI+D++TK
Sbjct:  496 AVSEEDLAPLVLAAKKARAAGSTAPQVWKGDVPPQVRQLLGAVDEDKIGTYAIGAKDRVVAASETTLADIDDASTK 571
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BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Match: A0A6H5JKN0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.770e-8
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   10 SDAVSEEDLAPLVAAAKKARAAGSTAPQVQKLLAAVDEDRIGTHAAGARERVVAALDTTLADINDSATK 216
            S  V E+DL  L +AAKKA+ AGST PQ+  ++ A  ED +GT+A G  +RV+AA    +A + D+A K
Sbjct:  154 SSGVKEDDLRGLESAAKKAKTAGSTLPQIDAMVGAAREDNMGTYAEGLMDRVLAASKDAIAKVKDAAAK 222
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BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Match: D8LMW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW4_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 2.500e-7
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   19 VSEEDLAPLVAAAKKARAAGSTAPQVQKLLAAVDEDRIGTHAAGARERVVAALDTTLADINDSATK 216
            V E+DL  L +AAK+A+ AGST PQ+  ++ A  ED++GT+A G  +RV+AA    +A + D+A +
Sbjct:  778 VKEDDLRGLESAAKRAKTAGSTLPQIDAMVGAAREDKMGTYAEGLMDRVLAASKDAIAKVKDAAAR 843
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BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Match: D8LHQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ0_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 1.070e-5
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   19 VSEEDLAPLVAAAKKARAAGSTAPQVQKLLAAVDEDRIGTHAAGARERVVAALDTTLADINDSA 210
            +S +D   L +AAKKAR AG+  PQV++ + A  ED +GT AAGA ER++AA +  L  IN S+
Sbjct:  841 LSSDDEYLLESAAKKARKAGACVPQVEQFVQAAREDGVGTFAAGALERLLAASEEALKSINASS 904
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10213.232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G4Q7_ECTSI1.020e-2379.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSC2_9PHAE1.180e-2070.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0G6_ECTSI8.370e-2070.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNS5_9PHAE2.150e-1971.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKN0_9PHAE2.770e-846.38PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LMW4_ECTSI2.500e-743.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHQ0_ECTSI1.070e-548.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10213contigH-canaliculatus_F_contig10213:180..1261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue5.2e-20
Seed eggNOG ortholog2880.D7G4Q7
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_003240.1
Exons2
Model size219
Cds size219
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928650.2958877-CDS-H-canaliculatus_F_contig10213:179..3051622928650.2958877-CDS-H-canaliculatus_F_contig10213:179..305Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10213 180..305 -
1696845513.6738148-CDS-H-canaliculatus_F_contig10213:179..3051696845513.6738148-CDS-H-canaliculatus_F_contig10213:179..305Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10213 180..305 -
1622928650.30756-CDS-H-canaliculatus_F_contig10213:1168..12611622928650.30756-CDS-H-canaliculatus_F_contig10213:1168..1261Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10213 1169..1261 -
1696845513.6889315-CDS-H-canaliculatus_F_contig10213:1168..12611696845513.6889315-CDS-H-canaliculatus_F_contig10213:1168..1261Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10213 1169..1261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10213.232.1prot_H-canaliculatus_F_contig10213.232.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10213 180..1261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10213.232.1

>prot_H-canaliculatus_F_contig10213.232.1 ID=prot_H-canaliculatus_F_contig10213.232.1|Name=mRNA_H-canaliculatus_F_contig10213.232.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=73bp
MGASDAVSEEDLAPLVAAAKKARAAGSTAPQVQKLLAAVDEDRIGTHAAG
ARERVVAALDTTLADINDSATK*
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mRNA from alignment at H-canaliculatus_F_contig10213:180..1261-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10213.232.1 ID=mRNA_H-canaliculatus_F_contig10213.232.1|Name=mRNA_H-canaliculatus_F_contig10213.232.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1082bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10213:180..1261- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGCCTCGGATGCCGTGAGCGAAGAGGACTTGGCCCCTCTCGTGGC
GGCGGCGAAGAAGGCCCGCGCGGCCGGCAGCACCGCTCCGCAGGTGTGTT
ATGTGGGTGGTGGTGTCCGGGATGCGTGTATGTTTGCTAAGATTGTTTGT
TCGGGAAGGGTAAGATGGCAAGCTACCTCTCGTTGCTGTTGTAGGTTTGC
GTTTGCGGACCCGGCTCGGCAAGCTCGTTCTCCTGGCACGTGGAGTCCAT
TTAACCATGGAAGGCTTCGTGGGCAGAAATTAGTCTGCTGTCGTGTTGCT
GTTCTGTCGTGTTCTGTTGTGTTGCAGCTTTACCTACCCGCGCGAGTTGC
TGCTCTCTCTGTCTCTCTCTGTATGATGGGTGCGTTTCTCTCTCTGTCTC
CCTTTCTCTCCAAGCTATCGTCGCCGTTGCTAGGGCCAAAGAAGGGCACC
CTGTTAATATTAAAAGGTGCTTACCGGCAGCAGCAAAAATGTTTACAAAT
TTTGTTTCTGGCTGCGAGTGCGCGTGTTGGCGTTTGGGAAGCAGGGAATA
ACACGGGTAACAATGCCCAATTGGCTCATGTGCGAATGCTAGCAGCAGCA
ACGATAGGAAGATGATGATATCGCTGATGCCTTCGAATCTAACCTGCTTG
TGTGGACGTGGAGGTGCCAAGTAAAGGTCGGAGATCAGCTCCCTTCCGCT
GTCCTCCCATCCCCGCCCAAGATAAACCGCAGTCTGTCCATCGGGAACCC
TTTCCTCGTCTCTTGGCTGTATCTTGGCATGCCGTCGCCCAGGGTCGCGT
TGTATTTTTGGCACAACGTGAGCATTTTCCGTCTCAAATATGGTGGGAGG
AACGAAATCTTGGGAGACGGCCTGTCGAAAAGATGTTGCCGTTCTGTCTC
CAACAACCGGCACGAATGTCGCGTTCTTTCAATTACTTCTGTCTCCGTCA
TGGCAGGTGCAAAAACTCCTGGCGGCTGTGGACGAGGACCGAATCGGCAC
GCACGCCGCCGGCGCCAGGGAGCGCGTGGTAGCCGCTTTGGACACCACGC
TCGCGGATATCAACGACTCCGCCACCAAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10213:180..1261-

>mRNA_H-canaliculatus_F_contig10213.232.1 ID=mRNA_H-canaliculatus_F_contig10213.232.1|Name=mRNA_H-canaliculatus_F_contig10213.232.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=438bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10213:180..1261- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGCCTCGGATGCCGTGAGCGAAGAGGACTTGGCCCCTCTCGTGGC
GGCGGCGAAGAAGGCCCGCGCGGCCGGCAGCACCGCTCCGCAGATGGGAG
CCTCGGATGCCGTGAGCGAAGAGGACTTGGCCCCTCTCGTGGCGGCGGCG
AAGAAGGCCCGCGCGGCCGGCAGCACCGCTCCGCAGGTGCAAAAACTCCT
GGCGGCTGTGGACGAGGACCGAATCGGCACGCACGCCGCCGGCGCCAGGG
AGCGCGTGGTAGCCGCTTTGGACACCACGCTCGCGGATATCAACGACTCC
GCCACCAAGTGAGTGCAAAAACTCCTGGCGGCTGTGGACGAGGACCGAAT
CGGCACGCACGCCGCCGGCGCCAGGGAGCGCGTGGTAGCCGCTTTGGACA
CCACGCTCGCGGATATCAACGACTCCGCCACCAAGTGA
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