mRNA_H-canaliculatus_F_contig10210.230.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10210.230.1
Unique NamemRNA_H-canaliculatus_F_contig10210.230.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10210.230.1 vs. uniprot
Match: A0A6H5KBK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK1_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 2.710e-64
Identity = 109/125 (87.20%), Postives = 115/125 (92.00%), Query Frame = 3 
Query:  957 GGVEDQLWPDKHRPRDVSCLAVHSKKVDEVRHWMTLALAARPDSEGACRLLALVGPPGSAKSTMVRLLAQDMDVELAEWQDTSGQGGPAYRAFNEGPALGGERPRHELGSSYQSAIDSFEEFMKR 1331
            GGVEDQLWPDKHRPRD+SCLAVHSKKVDEVRHWMTLALAARP +E ACR+LALVGPPGSAKSTMVRLLAQDMDVELAEWQ     GGPAYR F +GPAL GERPR+ELGSSYQS+IDSFEEFMKR
Sbjct:   36 GGVEDQLWPDKHRPRDISCLAVHSKKVDEVRHWMTLALAARPGNEEACRVLALVGPPGSAKSTMVRLLAQDMDVELAEWQ-----GGPAYRPFADGPALSGERPRYELGSSYQSSIDSFEEFMKR 155
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10210.230.1 vs. uniprot
Match: A0A0D7AHC1_9AGAR (p-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Fistulina hepatica ATCC 64428 TaxID=1128425 RepID=A0A0D7AHC1_9AGAR)

HSP 1 Score: 88.2 bits (217), Expect = 5.250e-15
Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = 3 
Query:  963 VEDQLWPDKHRPRDVSCLAVHSKKVDEVRHWMTLALAARPDSE--GACRLLALVGPPGSAKSTMVRLLAQDMDVELAEWQDTSGQGGPAYRAFNEGPALGGERPRHELGSSYQSAIDSFEEFMKR 1331
            ++D++W DK+ P     LAVH +KVD+VR W+  A    P  +     R+L L GP G+ K+  +R+L+++M+ ++ EW++      PA    ++G   G E   H+  SSY+SA   FE FM R
Sbjct:    1 LDDRMWVDKYEPSSEEELAVHERKVDDVRQWLNEAFHGGPSGKLHKYRRILVLTGPAGTGKTATLRVLSREMNFDITEWRNA-----PADDFIDQGHNWGDEGSSHDGASSYESAYAKFETFMAR 120
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10210.230.1 vs. uniprot
Match: A0A067SGZ0_GALM3 (Uncharacterized protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067SGZ0_GALM3)

HSP 1 Score: 85.9 bits (211), Expect = 3.380e-14
Identity = 46/127 (36.22%), Postives = 74/127 (58.27%), Query Frame = 3 
Query:  963 VEDQLWPDKHRPRDVSCLAVHSKKVDEVRHWMTLALAARPDSEGAC--RLLALVGPPGSAKSTMVRLLAQDMDVELAEWQDTSGQGGPAYRAFNEGPALGG--ERPRHELGSSYQSAIDSFEEFMKR 1331
             +D LW DK+ P   + LAVH +KV++VR W+T A    P  +     R+LAL GP G+ K++ +R+LA++M  E+ EW+++ G+  P +   +E P  G   +R + EL + Y+     FE F+ R
Sbjct:   97 TDDTLWVDKYEPTTEAELAVHVRKVEDVRRWLTEAFDGGPSGKLTKYRRILALTGPAGTGKTSTIRVLAREMGFEILEWRNSIGELAP-FANRSESPYQGSSSDRLQPELNTDYEGLFTKFEAFLAR 222
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10210.230.1 vs. uniprot
Match: A0A0C9VUS9_9AGAM (Uncharacterized protein n=1 Tax=Hydnomerulius pinastri MD-312 TaxID=994086 RepID=A0A0C9VUS9_9AGAM)

HSP 1 Score: 83.2 bits (204), Expect = 2.570e-13
Identity = 44/126 (34.92%), Postives = 76/126 (60.32%), Query Frame = 3 
Query:  966 EDQLWPDKHRPRDVSCLAVHSKKVDEVRHWMTLALAARPDSE--GACRLLALVGPPGSAKSTMVRLLAQDMDVELAEWQDTSGQGGPAY--RAFNEGPALGGERPRHELGSSYQSAIDSFEEFMKR 1331
            E++LW DK+ P   + LAVH +KV++VR W+  A    P S+     R+LAL GP G+AK+  +R+LA+++D E+ EW+++  + GP+Y    F++      + PR ++    ++  D F+ F+ R
Sbjct:  105 ENRLWVDKYEPTTEAELAVHKRKVEDVRRWLLEAFEGGPSSKLRKYRRILALTGPAGAAKTATLRVLARELDFEILEWRNSISERGPSYSNEEFDDY-----DEPRRDI----EALFDKFQAFLTR 221
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10210.230.1 vs. uniprot
Match: A0A4S4LS87_9AGAM (Uncharacterized protein n=2 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LS87_9AGAM)

HSP 1 Score: 82.8 bits (203), Expect = 3.220e-13
Identity = 45/123 (36.59%), Postives = 74/123 (60.16%), Query Frame = 3 
Query:  963 VEDQLWPDKHRPRDVSCLAVHSKKVDEVRHWMTLALAARPDSEGACRLLALVGPPGSAKSTMVRLLAQDMDVELAEWQDTSGQGGPAYRAFNEGPALGGERPRHELGSSYQSAIDSFEEFMKR 1331
             +D+LW D+  PR+   LAVH +KV++VR W+  ++ +    E   RLL L GP GSAK+  +R+LA+++ +E+ EW+++     P   + +E P  GG+    +    Y+SA+D FE F+ R
Sbjct:   86 ADDRLWVDQFEPRNAGDLAVHKRKVEDVRRWLVESVGSGK-LEKYRRLLVLTGPAGSAKTATIRVLARELGIEILEWRNS-----PNVPSSSEFPG-GGDDAYSDY--DYESAMDKFEAFLAR 199
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10210.230.1 vs. uniprot
Match: A0A8I2YT30_9AGAM (Rad17 cell cycle checkpoint protein-domain-containing protein n=2 Tax=Boletus reticuloceps TaxID=495285 RepID=A0A8I2YT30_9AGAM)

HSP 1 Score: 82.0 bits (201), Expect = 6.110e-13
Identity = 42/124 (33.87%), Postives = 73/124 (58.87%), Query Frame = 3 
Query:  966 EDQLWPDKHRPRDVSCLAVHSKKVDEVRHWMTLALAARPDSE--GACRLLALVGPPGSAKSTMVRLLAQDMDVELAEWQDTSGQGGPAYRAFNEGPALGGERPRHELGSSYQSAIDSFEEFMKR 1331
            +D+LW DK+ P   + LAVH +KV++VR W+  A    P ++     R+LAL GP G+AK++ +R+L++++D E+ EW+++  + GP+    N+ P      P   L    ++  D F+ F+ R
Sbjct:  107 DDRLWVDKYEPTSEAELAVHKRKVEDVRRWLLEAFEGGPSAKLRKYRRILALSGPAGTAKTSTLRVLSRELDFEILEWRNSMSERGPSVFT-NDDPG-----PNEGLDFDAETLFDKFQSFLTR 224
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10210.230.1 vs. uniprot
Match: D8SY85_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SY85_SELML)

HSP 1 Score: 81.6 bits (200), Expect = 6.520e-13
Identity = 50/122 (40.98%), Postives = 63/122 (51.64%), Query Frame = 3 
Query:  969 DQLWPDKHRPRDVSCLAVHSKKVDEVRHWMTLALAARPDSEGACRLLALVGPPGSAKSTMVRLLAQDMDVELAEWQDTSGQGGPAYRAFNEGPALGGERPRHE-LGSSYQSAIDSFEEFMKR 1331
            D LW DK RP  VS LAVHSKKV EVR WM   +        +C+LL + GP G  K T+VR+LA  M+ EL EW   +             P L  E   ++ LGS Y S +  FE F+ +
Sbjct:   62 DNLWIDKFRPACVSDLAVHSKKVGEVRQWMETQIDNPLGC--SCKLLLITGPAGVGKKTVVRVLANTMNAELCEWTAPT-------------PVLWKEHLHNDTLGSKYSSKLKDFETFLDK 168
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10210.230.1 vs. uniprot
Match: A0A0D0DCV1_9AGAM (Uncharacterized protein n=1 Tax=Paxillus rubicundulus Ve08.2h10 TaxID=930991 RepID=A0A0D0DCV1_9AGAM)

HSP 1 Score: 81.6 bits (200), Expect = 8.370e-13
Identity = 45/126 (35.71%), Postives = 72/126 (57.14%), Query Frame = 3 
Query:  960 GVEDQLWPDKHRPRDVSCLAVHSKKVDEVRHWMTLALAARPDSEGAC--RLLALVGPPGSAKSTMVRLLAQDMDVELAEWQDTSGQGGPAYRAFNEGPALGGERPRHELGSSYQSAIDSFEEFMKR 1331
            G +DQLW DK+ P   + LAVH +KV++VR W+  A    P ++     R+LAL GP G+AK+  +R+LA+++  E+ EW++   Q GP+    +EG  +       EL    ++  D F+ F+ R
Sbjct:  111 GDDDQLWVDKYEPTSEAELAVHKRKVEDVRRWLLEAFEGGPSAKLTKYRRILALTGPAGTAKTATLRVLARELGFEILEWRNGMSQRGPSSFT-DEGFGM-----NDELRDKTEALFDKFQAFLTR 230
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10210.230.1 vs. uniprot
Match: UPI001B862695 (Rad17 cell cycle checkpoint protein-domain-containing protein n=1 Tax=Suillus clintonianus TaxID=1904413 RepID=UPI001B862695)

HSP 1 Score: 81.3 bits (199), Expect = 1.050e-12
Identity = 45/124 (36.29%), Postives = 73/124 (58.87%), Query Frame = 3 
Query:  966 EDQLWPDKHRPRDVSCLAVHSKKVDEVRHWMTLALAARPDSE--GACRLLALVGPPGSAKSTMVRLLAQDMDVELAEWQDTSGQGGPAYRAFNEGPALGGERPRHELGSSYQSAIDSFEEFMKR 1331
            +D+LW DK+ P   + LAVH +KV++VR W++ A    P  +     R+L L GP G+AK+T VR+LA++M  E+ EW+++  + GP+  AF E     G+    +     ++  D F+ F+KR
Sbjct:   88 DDRLWVDKYEPTIEADLAVHKRKVEDVRRWLSEAFEGGPTGKLRKYRRILVLTGPAGTAKTTTVRVLAREMGFEIVEWRNSMSERGPS--AFIEDSKDFGD----DSWMDTEALFDKFQAFLKR 205
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10210.230.1 vs. uniprot
Match: A0A0C9T0G0_PAXIN (Uncharacterized protein n=1 Tax=Paxillus involutus ATCC 200175 TaxID=664439 RepID=A0A0C9T0G0_PAXIN)

HSP 1 Score: 80.1 bits (196), Expect = 2.440e-12
Identity = 42/124 (33.87%), Postives = 70/124 (56.45%), Query Frame = 3 
Query:  966 EDQLWPDKHRPRDVSCLAVHSKKVDEVRHWMTLALAARPDSEGAC--RLLALVGPPGSAKSTMVRLLAQDMDVELAEWQDTSGQGGPAYRAFNEGPALGGERPRHELGSSYQSAIDSFEEFMKR 1331
            +D+LW DK+ P   + LAVH +KV++VR W+  A    P ++     R+LAL GP G+AK+  +R+LA+++D E+ EW+++  + GP+     E           EL    ++  D F+ F+ R
Sbjct:   45 DDRLWVDKYEPTSEAELAVHKRKVEDVRRWLLEAFEGGPSAKLTKYRRILALTGPAGTAKTATLRVLARELDFEILEWRNSMSERGPSSFTDEEFGV------NDELRVETEALFDKFQAFLTR 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10210.230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBK1_9PHAE2.710e-6487.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0D7AHC1_9AGAR5.250e-1536.00p-loop containing nucleoside triphosphate hydrolas... [more]
A0A067SGZ0_GALM33.380e-1436.22Uncharacterized protein n=1 Tax=Galerina marginata... [more]
A0A0C9VUS9_9AGAM2.570e-1334.92Uncharacterized protein n=1 Tax=Hydnomerulius pina... [more]
A0A4S4LS87_9AGAM3.220e-1336.59Uncharacterized protein n=2 Tax=Bondarzewia mesent... [more]
A0A8I2YT30_9AGAM6.110e-1333.87Rad17 cell cycle checkpoint protein-domain-contain... [more]
D8SY85_SELML6.520e-1340.98Uncharacterized protein n=2 Tax=Selaginella moelle... [more]
A0A0D0DCV1_9AGAM8.370e-1335.71Uncharacterized protein n=1 Tax=Paxillus rubicundu... [more]
UPI001B8626951.050e-1236.29Rad17 cell cycle checkpoint protein-domain-contain... [more]
A0A0C9T0G0_PAXIN2.440e-1233.87Uncharacterized protein n=1 Tax=Paxillus involutus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10210contigH-canaliculatus_F_contig10210:170..4709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score81.3
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog88036.EFJ10749
KEGG koko:K06662
KEGG Pathwayko04111,ko04113,map04111,map04113
GOsGO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006282,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0019219,GO:0019222,GO:0022402,GO:0031323,GO:0031347,GO:0031570,GO:0031974,GO:0031981,GO:0033314,GO:0033554,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0080090,GO:0080134,GO:0080135,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903047,GO:2001020
EggNOG free text desc.Cell cycle checkpoint protein
EggNOG OGs37K1P@33090,3GCQZ@35493,COG0470@1,KOG1970@2759
COG Functional cat.DL
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons5
Model size1334
Cds size1116
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10210.230.1prot_H-canaliculatus_F_contig10210.230.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10210 388..4709 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928650.111732-UTR-H-canaliculatus_F_contig10210:169..3871622928650.111732-UTR-H-canaliculatus_F_contig10210:169..387Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10210 170..387 +
1696845513.558315-UTR-H-canaliculatus_F_contig10210:169..3871696845513.558315-UTR-H-canaliculatus_F_contig10210:169..387Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10210 170..387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928650.1225562-CDS-H-canaliculatus_F_contig10210:387..4511622928650.1225562-CDS-H-canaliculatus_F_contig10210:387..451Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10210 388..451 +
1696845513.5731204-CDS-H-canaliculatus_F_contig10210:387..4511696845513.5731204-CDS-H-canaliculatus_F_contig10210:387..451Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10210 388..451 +
1622928650.1353114-CDS-H-canaliculatus_F_contig10210:1688..20941622928650.1353114-CDS-H-canaliculatus_F_contig10210:1688..2094Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10210 1689..2094 +
1696845513.583896-CDS-H-canaliculatus_F_contig10210:1688..20941696845513.583896-CDS-H-canaliculatus_F_contig10210:1688..2094Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10210 1689..2094 +
1622928650.1493354-CDS-H-canaliculatus_F_contig10210:2321..26671622928650.1493354-CDS-H-canaliculatus_F_contig10210:2321..2667Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10210 2322..2667 +
1696845513.5928996-CDS-H-canaliculatus_F_contig10210:2321..26671696845513.5928996-CDS-H-canaliculatus_F_contig10210:2321..2667Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10210 2322..2667 +
1622928650.159014-CDS-H-canaliculatus_F_contig10210:3312..34741622928650.159014-CDS-H-canaliculatus_F_contig10210:3312..3474Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10210 3313..3474 +
1696845513.6013343-CDS-H-canaliculatus_F_contig10210:3312..34741696845513.6013343-CDS-H-canaliculatus_F_contig10210:3312..3474Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10210 3313..3474 +
1622928650.1711197-CDS-H-canaliculatus_F_contig10210:4571..47091622928650.1711197-CDS-H-canaliculatus_F_contig10210:4571..4709Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10210 4572..4709 +
1696845513.611161-CDS-H-canaliculatus_F_contig10210:4571..47091696845513.611161-CDS-H-canaliculatus_F_contig10210:4571..4709Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10210 4572..4709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10210.230.1

>prot_H-canaliculatus_F_contig10210.230.1 ID=prot_H-canaliculatus_F_contig10210.230.1|Name=mRNA_H-canaliculatus_F_contig10210.230.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=372bp
MAPGGQEPSGAARKGVRASEKGACGGSDSDSMADQGISATSVATAAATAV
IDLSAASLDDDPFLDSLEATEQQRQIAPNRKSKNSSSNSNTTGDRKKKKT
AGVTSSSCDGDGGGGGGGSGSSGAATGRRHPAARPLTSISALFGGGGGGN
RANRAGGSTAAPPRLRAGTKRPRANPATGQGRMVPPLPPPVATPAAFPDG
RESKQAPQSRRIGRLAAHGVDGGGRGSDGSRGPRETAAAGGGEGVGGGVE
DQLWPDKHRPRDVSCLAVHSKKVDEVRHWMTLALAARPDSEGACRLLALV
GPPGSAKSTMVRLLAQDMDVELAEWQDTSGQGGPAYRAFNEGPALGGERP
RHELGSSYQSAIDSFEEFMKR*
back to top

mRNA from alignment at H-canaliculatus_F_contig10210:170..4709+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10210.230.1 ID=mRNA_H-canaliculatus_F_contig10210.230.1|Name=mRNA_H-canaliculatus_F_contig10210.230.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10210:170..4709+ (Hapterophycus canaliculatus Oshoro5f female)
GTCTAAACCCGCAGAGCAATTGGTAGTAGTTCCTGAACTCGACTTTCCCC
AAAAATCGCTGCCCTCAGTGGTAGGCTTCCTCCCGCTGTGGGTTCGCGTT
GATTAATCGACGAGGGTCGTACCCTCCGACGCCATAAAAGCGAGTTGCTG
CTGCCTTTCTGCAGAACCTACCGCTGTTTTTGGCGGGAGAGGTACGAAGA
CCTTGCTGTGTGACAGGCATGGCCCCCGGAGGTCAGGAGCCATCCGGCGC
GGCACGGAAAGGAGTCAGGGCAAGCGAAAAAGGTACATGGGTCGGTTGTG
TTCCCAGGTCCTCGTGCCCGTGGCGGAAAATTCGTTGGCACGCTTGGTAC
CCCTCCGGTATCGTCAGCTTGTAGCATGCTCAAGCGTCGTCGTCGTTCCC
TTCTATCGTATCATGCGAAGCTCAATTTCCCAACGGGACACTTTTTCCAC
GTCGTGCCAAGGACGGGGGTTGCACCCCTACGAAGGCGACAAGGGGCTTA
TCAGGCGGCTGCGAAGATGGCGCTGCTTGCGCCACTTCTTCCAACCCCTG
CCCCTGCTTCGTTTCCTTTCCCGTTCCTCTTGTCCATTTCCGTATCTTTG
CGGAGATTTGCGCTGGTGTGGTTTCTCCTAGTCTTTGTTGAAGAAAGTTA
AGATTGCTGATCGCTTTCCCGTGGTTTGCGGATTTGCGGCATCGGTGGAG
CGGTTGAGTTGTTCATCTATCGTTTTGCTTACTCCAGAGCGGCGCGCTCC
CGTTTGTTGTTTGAAACAAAAAATATAGATAGAACAGAAGGAATGCCTTC
TATGAAAAGCCACGTCTCAGCAGGCGTCTCGACAAGGTTGTGCAGAATTC
CAAGCAGTGAGCGTTCAGGGCGATGGGCGGCCCTAAACCATCACCGAAGG
CACGAGGCTGCGAAACTCGGTAGCGGGAAATACGTAGGGATTGATTGTGG
TGAGATGGACGCGGTTGAAGCAGAGCACTGGTTTTTAGGAAAAGGGGTCA
ATAAAAAGAAAGCGATACCCTCCTCTGAGACAAAGTATATACTTGTAGAC
TCAGCGGGATTGTTTAAAATTCCTTAAAGAGCGTGAGGTTCAGCGTAAGG
TGAAAGGGGACAAGAAGATCACGAGACGCAGGAGGCTATGGGGCTTCCTA
CTTGAAACATTGTTATTTTGTGGGATAACGGCGAGCAAAGTTTAGGTAAC
GTTCAACCTTTGTTTTCATTCGGTTGTGGCCTTATTCGTTCCTGTCGTGG
AGACGTTGGCCTGAAAGTCCTTTCGAGTGGCACCCTCTTGCTGTGTATGG
GCTAAGCAGGGGAGATGTCTGGCGGTAGACCTGAACTGCAAGCCAAGCCA
CGGAATCGCAGACAAACAGCCGTGTCGTTCACCCTTGCGCCCGACTAACT
TATTTCGCCTGAAATAAAACGGGAGACAAAACAAAACCTAGGGCTCTGGC
CTCCCTTCTTCTCCCTTTCGTTCCTAACGCGCACCGTTGTTCCACCCGAC
GCACAAATCCTCCACTCAGGAGCCTGCGGCGGCAGCGACAGCGACTCTAT
GGCGGACCAGGGGATCAGCGCCACCAGCGTCGCAACTGCTGCTGCTACCG
CCGTTATCGACCTGTCCGCGGCCTCGTTGGACGACGATCCGTTCCTAGAC
TCGCTAGAGGCCACCGAGCAGCAGCGACAAATCGCACCGAACAGGAAGAG
CAAGAACAGCAGTAGCAACAGCAACACCACCGGCGACCGGAAAAAGAAGA
AAACGGCGGGCGTTACGAGCAGCAGCTGCGACGGCGACGGCGGCGGCGGC
GGCGGCGGTAGCGGAAGCTCGGGAGCAGCGACGGGCAGGCGCCACCCCGC
CGCCCGCCCCCTCACCTCCATTTCCGCGCTATTTGGAGGCGGGGGGGGGG
GTAACCGGGCAAATCGCGCTGGCGGGTAAGTCTCTGGGGGTTCCGTGACT
GTCTGCCTCCTACGAATCTGTATCCAGTACCCAGTAGTACGATGATGCAG
TATCGGGGAATTAATGCTTGGGCGGGTCGTGCTGAGATCGAAATGGTCAT
GATCCCAGCAGCAGCAACAAAAACAACAACGACAAGGACAGGTCATTTGT
AACTAACGCTCGATACCCACATACCATGATGCCCCACCCCCTTCCTCAAC
AGATCAACCGCGGCGCCCCCCAGGCTTCGAGCAGGAACAAAACGCCCTCG
CGCCAATCCGGCTACAGGCCAGGGTCGAATGGTCCCCCCACTGCCGCCGC
CAGTGGCAACGCCAGCTGCTTTTCCGGACGGGCGAGAAAGCAAGCAAGCG
CCGCAGAGCCGACGCATTGGACGCCTTGCTGCTCATGGCGTCGATGGCGG
CGGAAGGGGCAGTGATGGCAGCCGTGGACCGCGAGAGACAGCCGCAGCCG
GAGGCGGGGAAGGGGTTGGTGGGGGAGTGGAGGACCAGCTGTGGCCGGAC
AAGCACCGTCCCAGGGATGTCTCCTGCCTTGCGGTTCACTCGAAAAAGGC
GCGTGGGCTGTGCTATGGCATCGGTTGTCGGGGCGTGTGAGCGTGCGTGA
TGTGTGAAGTCGCCGTTCTTCAGGAGAACTGTGCACCAGCCCTGGCCTAG
ACGTCTGTGCCGATTCCGTCGTATGCTGCTTCTTTTTTTATCGAAGGCTG
TCCAACCTCAAAATCTCGGGCGAGCCCTTGAGGCGGGCCCTTAGTTCCGG
CCCCTGGCAGACGTTCCGTGCGGCGCTAGTATCATTGCTGTCGGTGTTGC
TCGAGAAAAACGATTTGTTCAACCCCAACCCTCTCTTCCAGGTCTTCAAC
CGTGTTTTGCCGACTGGCCTGTGGCTGCTTTTGTTGCTGTTGCTGCTGGT
GACGCTGTCACTTTTCTCTGTTCTCGATCAGGTCGACAAGTCGGCGCTGA
AATCCAGCTAGATCTCCGAAGCCTACCCAGCTCGAGCCCTCGTGTCCACC
CTCTCACCATTACCCGTCCCTCAACCGCAACCCTGACGCAAACGCTAGAG
CTAACACCAACGCCAACCCTTGCAACAACCCTGCCACCCTCGCCCACCAC
CCCAGCCCCGACGCTGAAACGAACGTTGACTTCCGAAGCAACCAACTCCA
ACCGTGGCTCTACCCCGTGGCCTCTGTCGAACCTCGACCTTAGGTCGACG
AAGTGCGGCACTGGATGACGCTGGCCCTCGCCGCTCGTCCCGATAGCGAG
GGAGCCTGTCGCCTCCTGGCTCTTGTGGGACCCCCGGGCTCGGCAAAGTC
GACCATGGTCAGGCTGCTAGCGCAAGACATGGACGTCGAACTCGCGGAGT
GGCAGGTGGGCTTCGTGAGCGATGTGTGCGAGAGAGGGTGTAGCGGCGGC
GGTGTGTCGCAAACGCCCGGGAGAGGCATACTCGGTGGCGCTGTGTCTTG
TTTTTGTTGTTGTTGTTGTTTCTAGCGTGGTTTCGTCGTTCCTGAGCCCG
CGGCGGGCGCAAAGCTTGGCACGGCGTGCGAGAAAGCAAAAGAAGATTGA
AGTCACGGCACGGAGAGGGCCGCGTCTCCGGAGGGGTCGTTGTTTCTGGT
GGCGGAGATGCCCACCGTTCTCAGGAGAACGAGAAACAGGCGAAAGAAAG
CAGAACGGAGCAGAACAAGTCGCGGCGCCTCGGAGAAGGACTGGGTGGTC
ATCTGTGATGCTCTTCGTTGCCTTGGTATCCTGAACTAATCCCCGAGCCA
AAAAACGTCGGGGACGGGCGGGGGCAGGCGGGGTAAGGAAGGAGTGAGCG
GAGATGAGGAAAGCCAAGCGAGGGTTAGGAGGGTCGAAGACGGCGAATCT
TTGTGGCAAGCGTCGACGCCCGTTGCCGCAGACCGTTGCGTTTCCACAGC
CGCGCCCCGCTCCGGTGCGCGCCACGCGCATGTTTGGGGGTGCTGGGACT
ACTGTGCTGGCACCGTTGTGTGCCTGTTGCCTGTTGTATCGGGTTCAGGT
ACGACGTACGATGTACAGTATACCATGTACATCGATTGCACGGGCGTGTG
CACAAGCAGTGCTCTGCGTCCAGCACTCCCTTCTGATACAAAGAGGAACG
GAGACATCACAACGAACCGATCGATGCATGGATGCTGCTCCGTTGGGCGG
GCAGAGGGGTTGAAACCTCCATTTTTGTTCGTGCGCTCCGACGGCCCTCT
GCCCCGGGCAAGGGATGTCGCTCAGTGACTTGCGGGCGAACCTGTGCTCA
TTTTGTGGTGGTGGCTGCTGGTACAACGGCTCGATGTTAGTTTTGTTTTG
TCTGAGCGACTTTTGAGCGTGAAGTCATCAACAACAACAACTGGCACGTC
TCTATCCACCGCAAATATTTTCGCCATTCACAAGCATAGTTCTTCGGTGT
ATACTCTGGATGTATGCGTGCGTTTGCGTGCTTTTTCGCTCCCCTTTCCC
AGGACACGTCGGGACAGGGGGGACCTGCGTACCGAGCCTTCAACGAAGGC
CCTGCACTCGGCGGGGAGCGCCCTCGCCACGAGCTCGGCAGCAGCTACCA
GAGCGCCATCGACTCCTTCGAGGAGTTCATGAAGAGGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10210:170..4709+

>mRNA_H-canaliculatus_F_contig10210.230.1 ID=mRNA_H-canaliculatus_F_contig10210.230.1|Name=mRNA_H-canaliculatus_F_contig10210.230.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2232bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10210:170..4709+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCCCCGGAGGTCAGGAGCCATCCGGCGCGGCACGGAAAGGAGTCAG
GGCAAGCGAAAAAGATGGCCCCCGGAGGTCAGGAGCCATCCGGCGCGGCA
CGGAAAGGAGTCAGGGCAAGCGAAAAAGGAGCCTGCGGCGGCAGCGACAG
CGACTCTATGGCGGACCAGGGGATCAGCGCCACCAGCGTCGCAACTGCTG
CTGCTACCGCCGTTATCGACCTGTCCGCGGCCTCGTTGGACGACGATCCG
TTCCTAGACTCGCTAGAGGCCACCGAGCAGCAGCGACAAATCGCACCGAA
CAGGAAGAGCAAGAACAGCAGTAGCAACAGCAACACCACCGGCGACCGGA
AAAAGAAGAAAACGGCGGGCGTTACGAGCAGCAGCTGCGACGGCGACGGC
GGCGGCGGCGGCGGCGGTAGCGGAAGCTCGGGAGCAGCGACGGGCAGGCG
CCACCCCGCCGCCCGCCCCCTCACCTCCATTTCCGCGCTATTTGGAGGCG
GGGGGGGGGGTAACCGGGCAAATCGCGCTGGCGGGAGCCTGCGGCGGCAG
CGACAGCGACTCTATGGCGGACCAGGGGATCAGCGCCACCAGCGTCGCAA
CTGCTGCTGCTACCGCCGTTATCGACCTGTCCGCGGCCTCGTTGGACGAC
GATCCGTTCCTAGACTCGCTAGAGGCCACCGAGCAGCAGCGACAAATCGC
ACCGAACAGGAAGAGCAAGAACAGCAGTAGCAACAGCAACACCACCGGCG
ACCGGAAAAAGAAGAAAACGGCGGGCGTTACGAGCAGCAGCTGCGACGGC
GACGGCGGCGGCGGCGGCGGCGGTAGCGGAAGCTCGGGAGCAGCGACGGG
CAGGCGCCACCCCGCCGCCCGCCCCCTCACCTCCATTTCCGCGCTATTTG
GAGGCGGGGGGGGGGGTAACCGGGCAAATCGCGCTGGCGGATCAACCGCG
GCGCCCCCCAGGCTTCGAGCAGGAACAAAACGCCCTCGCGCCAATCCGGC
TACAGGCCAGGGTCGAATGGTCCCCCCACTGCCGCCGCCAGTGGCAACGC
CAGCTGCTTTTCCGGACGGGCGAGAAAGCAAGCAAGCGCCGCAGAGCCGA
CGCATTGGACGCCTTGCTGCTCATGGCGTCGATGGCGGCGGAAGGGGCAG
TGATGGCAGCCGTGGACCGCGAGAGACAGCCGCAGCCGGAGGCGGGGAAG
GGGTTGGTGGGGGAGTGGAGGACCAGCTGTGGCCGGACAAGCACCGTCCC
AGGGATGTCTCCTGCCTTGCGGTTCACTCGAAAAAGATCAACCGCGGCGC
CCCCCAGGCTTCGAGCAGGAACAAAACGCCCTCGCGCCAATCCGGCTACA
GGCCAGGGTCGAATGGTCCCCCCACTGCCGCCGCCAGTGGCAACGCCAGC
TGCTTTTCCGGACGGGCGAGAAAGCAAGCAAGCGCCGCAGAGCCGACGCA
TTGGACGCCTTGCTGCTCATGGCGTCGATGGCGGCGGAAGGGGCAGTGAT
GGCAGCCGTGGACCGCGAGAGACAGCCGCAGCCGGAGGCGGGGAAGGGGT
TGGTGGGGGAGTGGAGGACCAGCTGTGGCCGGACAAGCACCGTCCCAGGG
ATGTCTCCTGCCTTGCGGTTCACTCGAAAAAGGTCGACGAAGTGCGGCAC
TGGATGACGCTGGCCCTCGCCGCTCGTCCCGATAGCGAGGGAGCCTGTCG
CCTCCTGGCTCTTGTGGGACCCCCGGGCTCGGCAAAGTCGACCATGGTCA
GGCTGCTAGCGCAAGACATGGACGTCGAACTCGCGGAGTGGCAGGTCGAC
GAAGTGCGGCACTGGATGACGCTGGCCCTCGCCGCTCGTCCCGATAGCGA
GGGAGCCTGTCGCCTCCTGGCTCTTGTGGGACCCCCGGGCTCGGCAAAGT
CGACCATGGTCAGGCTGCTAGCGCAAGACATGGACGTCGAACTCGCGGAG
TGGCAGGACACGTCGGGACAGGGGGGACCTGCGTACCGAGCCTTCAACGA
AGGCCCTGCACTCGGCGGGGAGCGCCCTCGCCACGAGCTCGGCAGCAGCT
ACCAGAGCGCCATCGACTCCTTCGAGGAGTTCATGAAGAGGTGAGACACG
TCGGGACAGGGGGGACCTGCGTACCGAGCCTTCAACGAAGGCCCTGCACT
CGGCGGGGAGCGCCCTCGCCACGAGCTCGGCAGCAGCTACCAGAGCGCCA
TCGACTCCTTCGAGGAGTTCATGAAGAGGTGA
back to top