mRNA_H-canaliculatus_F_contig12759.2298.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12759.2298.1
Unique NamemRNA_H-canaliculatus_F_contig12759.2298.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12759.2298.1 vs. uniprot
Match: D8LTY1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTY1_ECTSI)

HSP 1 Score: 350 bits (897), Expect = 4.400e-118
Identity = 169/188 (89.89%), Postives = 178/188 (94.68%), Query Frame = 1 
Query:   16 QEIFHQQLPKMPKEYIVRLVFDRKHHSIVLTKKGVPIGGITYRPFVEQKFGEIAFCAVASNSQVQGHGSRLMNELKMVAIREDLSHFHTYADNYAIGYFSKHGFTKNLTMSRDRWFQYVKDYDGGTHMECYVHPTVPYMQQADMFERQGKFLRERIADISTSKVVHPGLSEEALKAMTSAIDIPGKRE 579
            +EIFHQQLPKMPKEYIVRLVFDRKHHSIVLTKKGVPIGGITYRPFVEQKFGEIAFCAVASNSQVQG+GSRLMNELKMVAIREDLSHFHTYADNYAIGYF+KHGFTKNLTMSRDRWF YVKDYDGGTHMECYVHPTVPYM+QA+MFE Q +FLRERIADIS+SKVVHPGLSEEA  ++   IDIPG  E
Sbjct:  101 KEIFHQQLPKMPKEYIVRLVFDRKHHSIVLTKKGVPIGGITYRPFVEQKFGEIAFCAVASNSQVQGYGSRLMNELKMVAIREDLSHFHTYADNYAIGYFAKHGFTKNLTMSRDRWFNYVKDYDGGTHMECYVHPTVPYMKQAEMFEIQSQFLRERIADISSSKVVHPGLSEEAFHSLEHHIDIPGVAE 288
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12759.2298.1 vs. uniprot
Match: A0A835ZI58_9STRA (Histone acetyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI58_9STRA)

HSP 1 Score: 213 bits (541), Expect = 2.350e-65
Identity = 103/190 (54.21%), Postives = 133/190 (70.00%), Query Frame = 1 
Query:   16 QEIFHQQLPKMPKEYIVRLVFDRKHHSIVLTKKGVPIGGITYRPFVEQKFGEIAFCAVASNSQVQGHGSRLMNELKMVAIREDLSHFHTYADNYAIGYFSKHGFTKNLTMSRDRWFQYVKDYDGGTHMECYVHPTVPYMQQADMFERQGKFLRERIADISTSKV--VHPGLSEEALKAMTSAIDIPGKRE 579
            + IF +QLPKMPKEYIVRLVFD +H S+ L K  VPIGGI YRPF +Q+FGEIAFCAV +N QVQGHG+RLMN LK  A+ E+++HF TYADN+AIGYF K GFTK+++M R+RW  Y+K YDGGT MECYVHP++PY +   M + Q +++  R      + +   +PG             DIPG ++
Sbjct:    8 KNIFAKQLPKMPKEYIVRLVFDPRHKSLALCKGDVPIGGICYRPFYDQQFGEIAFCAVTANEQVQGHGTRLMNHLKQYALGENITHFLTYADNFAIGYFKKQGFTKSISMPRERWHGYIKHYDGGTLMECYVHPSIPYTRVPHMLQAQLEYVINRYRHKGEAAIFKAYPGSQVPYSNVKDLLQDIPGLKD 197
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12759.2298.1 vs. uniprot
Match: A0A150GDM3_GONPE (Histone acetyltransferase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GDM3_GONPE)

HSP 1 Score: 203 bits (516), Expect = 1.570e-60
Identity = 112/197 (56.85%), Postives = 135/197 (68.53%), Query Frame = 1 
Query:   16 QEIFHQQLPKMPKEYIVRLVFDRKHHSIVLTKK-GVPIGGITYRPFVEQKFGEIAFCAVASNSQVQGHGSRLMNELKMVAIRED-LSHFHTYADNYAIGYFSKHGFTKNLTMSRDRWFQYVKDYDGGTHMECYVHPTVPYMQQADMFERQGKFLRERIADISTSKVVHPGLSEEALKAMT----SAI---DIPGKRE 579
            + IF +QLP MPKEYIVRLV DR+H S+ L K+ G  IGGITYR F EQ FGEIAFCAV SN QV+G+G+RLMN+ K  A   D L+HF TYADN A+GYF K GFTK +TM R+RW  Y+KDYDGGT MEC +HP V ++   D+  RQ   L +RI  +S + VV PGLS  A  A      +A+   DIPG RE
Sbjct:   47 KNIFSKQLPNMPKEYIVRLVMDRRHRSVALLKRNGTVIGGITYRAFHEQAFGEIAFCAVTSNEQVKGYGTRLMNQTKDFARTLDRLTHFLTYADNNAVGYFEKQGFTKEITMERERWQGYIKDYDGGTLMECVMHPRVCFITLPDLVRRQRIALDDRIRQLSNAHVVRPGLSHFADAAAAGRPRTALHIGDIPGVRE 243
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12759.2298.1 vs. uniprot
Match: A0A0U9I6X7_KLENI (Histone acetyltransferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9I6X7_KLENI)

HSP 1 Score: 204 bits (518), Expect = 5.140e-60
Identity = 105/194 (54.12%), Postives = 132/194 (68.04%), Query Frame = 1 
Query:   16 QEIFHQQLPKMPKEYIVRLVFDRKHHSIVLTKKGVPIGGITYRPFVEQKFGEIAFCAVASNSQVQGHGSRLMNELKMVAIRED-LSHFHTYADNYAIGYFSKHGFTKNLTMSRDRWFQYVKDYDGGTHMECYVHPTVPYMQQADMFERQGKFLRERIADISTSKVVHPGLSE-----EALKAMTSAIDIPGKRE 579
            + IF +QLP MPKEYIVRLV DR H S++L K+   IGGITYRP+  ++FGEIAFCA+ S  QV+G G+RLMN LK  A   D L +F TYADN A+GYF K GFTK +TM R+RW  Y+KDYDGGT MEC++HPT+P+   A M   Q + + E++  +S   VVHPGL          KA+ S  +IPG RE
Sbjct:  161 KNIFSKQLPNMPKEYIVRLVMDRNHKSMMLIKQNTVIGGITYRPYPTRRFGEIAFCAITSTEQVKGFGTRLMNHLKQHARDVDNLEYFLTYADNNAVGYFGKQGFTKEITMDRERWHGYIKDYDGGTLMECHIHPTLPHTTLAKMLRMQKQAIEEKVRQLSNQHVVHPGLDTWKKAGYGRKAI-SIEEIPGVRE 353
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12759.2298.1 vs. uniprot
Match: A0A067CY31_SAPPC (Histone acetyltransferase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CY31_SAPPC)

HSP 1 Score: 203 bits (516), Expect = 1.790e-59
Identity = 100/189 (52.91%), Postives = 128/189 (67.72%), Query Frame = 1 
Query:   16 QEIFHQQLPKMPKEYIVRLVFDRKHHSIVLTK-KGVPIGGITYRPFVEQKFGEIAFCAVASNSQVQGHGSRLMNELKMVAIREDLSHFHTYADNYAIGYFSKHGFTKNLTMSRDRWFQYVKDYDGGTHMECYVHPTVPYMQQADMFERQGKFLRERIADISTSKVVHPGLSEEALKAMTSAIDIPGKRE 579
            + IF +QLPKMPKEYIVRLVFDR HHS+V+ K K   +GGI YRPF+   FGEIAFCA+ ++ QV+G+G+RLMN LK     + +SHF TYADNYAIGYF K GF+K ++M +  WF Y+KDYDGGT MEC +H  + Y+    M   Q K L E+I   S + VV+PGL+      +     +PG RE
Sbjct:  202 KNIFSKQLPKMPKEYIVRLVFDRNHHSMVILKNKKTVVGGICYRPFLANHFGEIAFCAITASEQVKGYGTRLMNHLKEYVKTQGISHFLTYADNYAIGYFKKQGFSKIVSMPKANWFGYIKDYDGGTLMECCIHEHINYLDITSMVHTQRKMLMEKIQARSHAHVVYPGLTTFCEARLVDVYSVPGVRE 390
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12759.2298.1 vs. uniprot
Match: UPI000644E100 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E100)

HSP 1 Score: 200 bits (509), Expect = 1.920e-59
Identity = 96/188 (51.06%), Postives = 132/188 (70.21%), Query Frame = 1 
Query:   16 QEIFHQQLPKMPKEYIVRLVFDRKHHSIVLTKKGVPIGGITYRPFVEQKFGEIAFCAVASNSQVQGHGSRLMNELKMVAIREDLSHFHTYADNYAIGYFSKHGFTKNLTMSRDRWFQYVKDYDGGTHMECYVHPTVPYMQQADMFERQGKFLRERIADISTSKVVHPGLSEEALKAMTSAIDIPGKRE 579
            + +F +QLPKMP+EYIVRL+FDR HHS+++ K+ V IGGI++RPF EQ F EIAFCA+ SN QV+G+GS LM  LK    +  + HF T+ADN+AI YF K GFT  +T++RD+W  ++++YDGG+ MEC VHP VPY+  + +   Q + L ++I  ISTS VVHPGL         +  DIPG ++
Sbjct:  122 KNVFSKQLPKMPREYIVRLIFDRFHHSLLIIKRDVVIGGISFRPFREQGFIEIAFCAITSNEQVKGYGSYLMTHLKEHNRKTGIYHFLTFADNFAIEYFQKQGFTHEITLARDKWKGFIQEYDGGSLMECVVHPNVPYLDISSLVREQREVLNKKIRTISTSHVVHPGLKHFQQGRRLAIGDIPGIKQ 309
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12759.2298.1 vs. uniprot
Match: A0A485LR22_9STRA (Histone acetyltransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LR22_9STRA)

HSP 1 Score: 203 bits (516), Expect = 4.880e-59
Identity = 98/189 (51.85%), Postives = 130/189 (68.78%), Query Frame = 1 
Query:   16 QEIFHQQLPKMPKEYIVRLVFDRKHHSIVLTK-KGVPIGGITYRPFVEQKFGEIAFCAVASNSQVQGHGSRLMNELKMVAIREDLSHFHTYADNYAIGYFSKHGFTKNLTMSRDRWFQYVKDYDGGTHMECYVHPTVPYMQQADMFERQGKFLRERIADISTSKVVHPGLSEEALKAMTSAIDIPGKRE 579
            + IF +QLPKMPKEYIVRLVFDR HHS+V+ K K   +GGI YRPF+   FGEIAFCA+ ++ QV+G+G+RLMN LK     + ++HF TYADNYAIGYF K GF+K ++M +  WF Y+KDYDGGT MEC +H  + Y+    M + Q K L E I   S + VV+PGL+      + +  ++PG +E
Sbjct:  260 KNIFSKQLPKMPKEYIVRLVFDRNHHSMVILKNKKTVVGGICYRPFLANHFGEIAFCAITASEQVKGYGTRLMNHLKEYVKTQGITHFLTYADNYAIGYFKKQGFSKVVSMVKSNWFGYIKDYDGGTLMECVIHQKINYLSITSMVQEQRKMLLEEIQKRSKANVVYPGLTSFCDSRLVNIHNVPGVKE 448
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12759.2298.1 vs. uniprot
Match: A0A0W8DN52_PHYNI (Histone acetyltransferase n=20 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DN52_PHYNI)

HSP 1 Score: 203 bits (516), Expect = 6.980e-59
Identity = 97/189 (51.32%), Postives = 135/189 (71.43%), Query Frame = 1 
Query:   16 QEIFHQQLPKMPKEYIVRLVFDRKHHSIVLTKKGVP-IGGITYRPFVEQKFGEIAFCAVASNSQVQGHGSRLMNELKMVAIREDLSHFHTYADNYAIGYFSKHGFTKNLTMSRDRWFQYVKDYDGGTHMECYVHPTVPYMQQADMFERQGKFLRERIADISTSKVVHPGLSEEALKAMTSAIDIPGKRE 579
            + IF +QLPKMPKEYIVRLVFD+ H S++L K G   IGGI YRPF + +F EIAFCA+ ++ QV+G+G+RLMN LK     ++++HF TYADNYAIGYF K GFTK+++M+R  W+ Y+KDYDGGT MEC +H  + Y++   M  +Q K ++++I D S +K V+PGL+  A   +     +PG +E
Sbjct:  289 KNIFAKQLPKMPKEYIVRLVFDKNHRSMLLLKNGTHVIGGICYRPFEKNQFAEIAFCAINASDQVKGYGTRLMNHLKEYVKTKNITHFLTYADNYAIGYFKKQGFTKSVSMARPNWYGYIKDYDGGTLMECTIHTQINYLRITSMIHQQRKAIQDKIQDSSRAKTVYPGLTAFAEGRLMDIYMVPGVKE 477
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12759.2298.1 vs. uniprot
Match: A0A1V9ZLF8_9STRA (Histone acetyltransferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLF8_9STRA)

HSP 1 Score: 201 bits (512), Expect = 7.100e-59
Identity = 97/189 (51.32%), Postives = 130/189 (68.78%), Query Frame = 1 
Query:   16 QEIFHQQLPKMPKEYIVRLVFDRKHHSIVLTK-KGVPIGGITYRPFVEQKFGEIAFCAVASNSQVQGHGSRLMNELKMVAIREDLSHFHTYADNYAIGYFSKHGFTKNLTMSRDRWFQYVKDYDGGTHMECYVHPTVPYMQQADMFERQGKFLRERIADISTSKVVHPGLSEEALKAMTSAIDIPGKRE 579
            + IF +QLPKMPKEYIVRLVFDR HHS+V+ K K   +GGI YRPF+   FGEIAFCA+ ++ QV+G+G+RLMN LK     + ++HF TYADNYAIGYF K GF+K ++M +  WF Y+KDYDGGT MEC +H  + Y+    M ++Q K + E+I   S + VV+PGL+      +     +PG +E
Sbjct:  203 KNIFSKQLPKMPKEYIVRLVFDRNHHSMVILKNKKHVVGGICYRPFLANHFGEIAFCAITASEQVKGYGTRLMNHLKEYVKTQGITHFLTYADNYAIGYFKKQGFSKIVSMPKSNWFGYIKDYDGGTLMECCIHTHINYLDITSMVQQQRKMIMEKIQARSKAHVVYPGLTTFCEARLVDVYSVPGVKE 391
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12759.2298.1 vs. uniprot
Match: W7TL82_9STRA (Histone acetyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL82_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.060e-58
Identity = 102/198 (51.52%), Postives = 135/198 (68.18%), Query Frame = 1 
Query:   10 ARQEIFHQQLPKMPKEYIVRLVFDRKHHSIVLTKKGVPIGGITYRPFVEQKFGEIAFCAVASNSQVQGHGSRLMNELKMVAIREDLSHFHTYADNYAIGYFSKHGFTKNLTMSRDRWFQYVKDYDGGTHMECYVHPTVPYMQQADMFERQGKFLRERIADISTSKVVHPGLS-EEALKA-------MTSAIDIPGKRE 579
            A + IF +QLPKMPKEYIVRLVFDR+H ++ L +  + IGGI YRP+  Q+F EIAFCA+ +  QV+G+G+RLMN LK  A RE L +F TYADNYAIGYF K GF+K L M R +W  Y+KDYDG   MECYVHPT+ Y+   D+  RQ  ++  R+   S S V++PGL+  +ALK        +   +++PG +E
Sbjct:  183 ALKNIFAKQLPKMPKEYIVRLVFDRRHRAVALCRGKLVIGGICYRPYPSQRFAEIAFCAIMATEQVKGYGTRLMNHLKEQAKREGLRYFLTYADNYAIGYFRKQGFSKTLGMPRAQWMGYIKDYDGAHLMECYVHPTINYLDVPDIIARQRAYIHSRLKVKSKSHVIYPGLACFKALKEGGKEGGRVRDVMEVPGIKE 380
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12759.2298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTY1_ECTSI4.400e-11889.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZI58_9STRA2.350e-6554.21Histone acetyltransferase n=2 Tax=Tribonema minus ... [more]
A0A150GDM3_GONPE1.570e-6056.85Histone acetyltransferase n=1 Tax=Gonium pectorale... [more]
A0A0U9I6X7_KLENI5.140e-6054.12Histone acetyltransferase n=1 Tax=Klebsormidium ni... [more]
A0A067CY31_SAPPC1.790e-5952.91Histone acetyltransferase n=2 Tax=Saprolegnia TaxI... [more]
UPI000644E1001.920e-5951.06hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A485LR22_9STRA4.880e-5951.85Histone acetyltransferase n=1 Tax=Aphanomyces stel... [more]
A0A0W8DN52_PHYNI6.980e-5951.32Histone acetyltransferase n=20 Tax=Phytophthora Ta... [more]
A0A1V9ZLF8_9STRA7.100e-5951.32Histone acetyltransferase n=1 Tax=Achlya hypogyna ... [more]
W7TL82_9STRA1.060e-5851.52Histone acetyltransferase n=2 Tax=Monodopsidaceae ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12759contigH-canaliculatus_F_contig12759:805..2602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score350.9
Seed ortholog evalue3.8e-94
Seed eggNOG ortholog2880.D8LTY1
Preferred nameHAG1
KEGG koko:K06062
KEGG Pathwayko04330,ko04919,ko05166,ko05203,map04330,map04919,map05166,map05203
GOsGO:0000003,GO:0000123,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004402,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0007275,GO:0008080,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009908,GO:0009987,GO:0010015,GO:0010321,GO:0010468,GO:0010484,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0022622,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034212,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045893,GO:0045935,GO:0048364,GO:0048367,GO:0048518,GO:0048522,GO:0048580,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0061458,GO:0061733,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090567,GO:0097159,GO:0099402,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1905392,GO:1990234,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1472@2759
EC2.3.1.48
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGCN5-like GNAT family acetyltransferase
Ec32 orthologEc-12_003920.1
Exons3
Model size579
Cds size579
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12759.2298.1prot_H-canaliculatus_F_contig12759.2298.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12759 805..2602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.1937897-CDS-H-canaliculatus_F_contig12759:804..10081622928997.1937897-CDS-H-canaliculatus_F_contig12759:804..1008Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12759 805..1008 +
1696845643.6230693-CDS-H-canaliculatus_F_contig12759:804..10081696845643.6230693-CDS-H-canaliculatus_F_contig12759:804..1008Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12759 805..1008 +
1622928997.2324705-CDS-H-canaliculatus_F_contig12759:1644..17991622928997.2324705-CDS-H-canaliculatus_F_contig12759:1644..1799Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12759 1645..1799 +
1696845643.6369224-CDS-H-canaliculatus_F_contig12759:1644..17991696845643.6369224-CDS-H-canaliculatus_F_contig12759:1644..1799Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12759 1645..1799 +
1622928997.2628114-CDS-H-canaliculatus_F_contig12759:2382..26021622928997.2628114-CDS-H-canaliculatus_F_contig12759:2382..2602Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12759 2383..2602 +
1696845643.6495192-CDS-H-canaliculatus_F_contig12759:2382..26021696845643.6495192-CDS-H-canaliculatus_F_contig12759:2382..2602Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12759 2383..2602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12759.2298.1

>prot_H-canaliculatus_F_contig12759.2298.1 ID=prot_H-canaliculatus_F_contig12759.2298.1|Name=mRNA_H-canaliculatus_F_contig12759.2298.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=193bp
MPSARQEIFHQQLPKMPKEYIVRLVFDRKHHSIVLTKKGVPIGGITYRPF
VEQKFGEIAFCAVASNSQVQGHGSRLMNELKMVAIREDLSHFHTYADNYA
IGYFSKHGFTKNLTMSRDRWFQYVKDYDGGTHMECYVHPTVPYMQQADMF
ERQGKFLRERIADISTSKVVHPGLSEEALKAMTSAIDIPGKRE
back to top

mRNA from alignment at H-canaliculatus_F_contig12759:805..2602+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12759.2298.1 ID=mRNA_H-canaliculatus_F_contig12759.2298.1|Name=mRNA_H-canaliculatus_F_contig12759.2298.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1798bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12759:805..2602+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCTCGGCGCGGCAGGAGATCTTCCACCAGCAGCTGCCCAAGATGCC
GAAGGAGTACATCGTCCGCCTCGTGTTCGACCGCAAGCACCATTCCATCG
TGCTCACCAAGAAAGGCGTCCCCATCGGGGGCATCACCTACCGCCCTTTC
GTCGAGCAAAAGTTCGGGGAGATCGCCTTCTGCGCGGTGGCCAGCAACTC
CCAGGTACCGCGTCCACTCTACGTGCCCTCCACGCTTGTCTTCTCTGTCG
AGGCAGGCAGGAGTAGGCCGGACCAAACCCGCGCGCACATGCGTGCACAC
ACGCACACCAACCGTCCCCATCATGCTAGGCGATTTGCCTGTTTCTCTGG
TGCCCCTCCGTTCCGTCCTGTTTGGGTAGATGCACCCACCCGGTTCATAA
TGTGTTTGTTGGGGATGGGGGATGGGGAAGGGTGGGAGGTGTTGCGAATG
GTGCCGCTGGTGCTGTGGTGCAGCTCACAGTCGTGTAGTGATTCAGGAGC
GTTTCGGTTTCACGCCTTATGGCGTGTGCGAAGCGCCGTGTCTGCCGGCA
TCATCGACAGGCCGCGCATCGTGTGTTTCTCTGAGGCAAGGAAAAATCCA
TGTGGTGAAAACTTGAACGTGAGCAGCAAAGCCATCCGCGAGAGCAGACC
TTGCGGCCCCGGCATATCAGCAACTTCGCAAAAGCGATGGTAACAAGAGC
AACACGAGCAACAGTGGCAACGAGAACAACAGCAACAGCCACCACAGCAA
GCGGCGATGACCGCGGATAAAAGCGACGAAAAACAACTCAGACGCAGCAA
CTTGTAAATGCCAACCGTGGGGTTTTCAAACACGTCTCAGGTCCAGGGAC
ACGGCAGCCGGCTGATGAACGAGCTGAAGATGGTGGCCATCCGCGAGGAC
CTGTCGCACTTTCACACGTACGCCGACAACTACGCCATCGGCTACTTCTC
GAAGCACGGCTTCACCAAGAACCTCACCATGTCTCGCGACAGATGGTGAG
AGATGAAAGATCGAGTGGACCGCCGGTTGGCAGAGAAAGGATGTATCATA
CTGGAGAAAAAAAAACGATCCATGTTGCTTCCGTCCCGGTCGGTGTCGTT
TGTGTGGTTTGTCGTTCGCAGAGTTCTAGCGAATATTTTGATGGTGACGC
TGGTGTAATTTTGTACGCCGTTCCGTGGATGGTAGGCGTGCGGCAATATT
GCAGATGTTGTTGCCCGTCTGTCATGTTCGTTTGGATCTCCCCTTCGGTG
CTTTGCCTCCTGCGCCTCCTCCTATCTCCCCCCACCGCCTTGCTTCCTCT
GCGCCAAGCAGCGCTCTTCTTTTTCCGCCCCTCAGCTGGTCGCCCAAGCG
GGAAAAAAGCCGAAGAGCAGGCGGCAAGGAGAGGCTCCGCTTCGACGTGC
TACGTAGCCTGTCGTGCACGTTCTCGTTCTTCCTGTCTTGCTGTGCCTGT
CGACGACGTTGCAGACATCGGTGCCGAGAAAGCCCGATGGACCACTCACT
GCCTGCAGTCATCCTCCACCGCGTGCCAACCGTGACCCCTCGTCGCTCTT
GTCTCTCGTGGGGTCGGATCGCATAAAGGTTCCAGTACGTCAAGGACTAC
GACGGCGGGACGCACATGGAGTGCTACGTCCACCCCACGGTGCCGTACAT
GCAGCAGGCCGACATGTTCGAGAGGCAGGGGAAGTTCCTCAGGGAGCGCA
TCGCTGACATCTCTACGAGCAAGGTAGTGCACCCGGGGTTAAGCGAAGAG
GCTCTCAAGGCTATGACGAGCGCCATCGACATCCCAGGTAAACGGGAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12759:805..2602+

>mRNA_H-canaliculatus_F_contig12759.2298.1 ID=mRNA_H-canaliculatus_F_contig12759.2298.1|Name=mRNA_H-canaliculatus_F_contig12759.2298.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1158bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12759:805..2602+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCTCGGCGCGGCAGGAGATCTTCCACCAGCAGCTGCCCAAGATGCC
GAAGGAGTACATCGTCCGCCTCGTGTTCGACCGCAAGCACCATTCCATCG
TGCTCACCAAGAAAGGCGTCCCCATCGGGGGCATCACCTACCGCCCTTTC
GTCGAGCAAAAGTTCGGGGAGATCGCCTTCTGCGCGGTGGCCAGCAACTC
CCAGATGCCCTCGGCGCGGCAGGAGATCTTCCACCAGCAGCTGCCCAAGA
TGCCGAAGGAGTACATCGTCCGCCTCGTGTTCGACCGCAAGCACCATTCC
ATCGTGCTCACCAAGAAAGGCGTCCCCATCGGGGGCATCACCTACCGCCC
TTTCGTCGAGCAAAAGTTCGGGGAGATCGCCTTCTGCGCGGTGGCCAGCA
ACTCCCAGGTCCAGGGACACGGCAGCCGGCTGATGAACGAGCTGAAGATG
GTGGCCATCCGCGAGGACCTGTCGCACTTTCACACGTACGCCGACAACTA
CGCCATCGGCTACTTCTCGAAGCACGGCTTCACCAAGAACCTCACCATGT
CTCGCGACAGATGGTCCAGGGACACGGCAGCCGGCTGATGAACGAGCTGA
AGATGGTGGCCATCCGCGAGGACCTGTCGCACTTTCACACGTACGCCGAC
AACTACGCCATCGGCTACTTCTCGAAGCACGGCTTCACCAAGAACCTCAC
CATGTCTCGCGACAGATGGTTCCAGTACGTCAAGGACTACGACGGCGGGA
CGCACATGGAGTGCTACGTCCACCCCACGGTGCCGTACATGCAGCAGGCC
GACATGTTCGAGAGGCAGGGGAAGTTCCTCAGGGAGCGCATCGCTGACAT
CTCTACGAGCAAGGTAGTGCACCCGGGGTTAAGCGAAGAGGCTCTCAAGG
CTATGACGAGCGCCATCGACATCCCAGGTAAACGGGAGGTTCCAGTACGT
CAAGGACTACGACGGCGGGACGCACATGGAGTGCTACGTCCACCCCACGG
TGCCGTACATGCAGCAGGCCGACATGTTCGAGAGGCAGGGGAAGTTCCTC
AGGGAGCGCATCGCTGACATCTCTACGAGCAAGGTAGTGCACCCGGGGTT
AAGCGAAGAGGCTCTCAAGGCTATGACGAGCGCCATCGACATCCCAGGTA
AACGGGAG
back to top