mRNA_H-canaliculatus_F_contig1021.228.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1021.228.1
Unique NamemRNA_H-canaliculatus_F_contig1021.228.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1021.228.1 vs. uniprot
Match: D8LJA7_ECTSI (PITH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA7_ECTSI)

HSP 1 Score: 387 bits (994), Expect = 1.750e-134
Identity = 213/235 (90.64%), Postives = 218/235 (92.77%), Query Frame = 1
Query:    1 MASCRHDHEEAGXXXXXXXXXXXXXXXXXXXX-DPEDPDGMSLFGLIDTTRVRCLNESVPGGGLNCLKPWDKRRDPQPRLESEEDDPELIIFVPFTQVVKIRAISVTGGGEGSAPSAMKVFVNRDDIDFGLAQDLPGVQTLEMVRDSGGIEVDYPAKITKMQNVSDITLFVPSNFGADSTVITYLGFKGESTKASENKRERREFRHGVVECVYEAKPMPEDHKAPSGETGGRNIL 702
            M+SCRHDHEEAGXXXXXXXXXXXXXXXXXXXX DPEDPDGMSLFGLIDTTRVRCLNES PG GLNCLKPWDKRRDPQPRLESEEDDPELII+VPFTQVVKIRAISVTGGGEGSAPSAMKVFVNRDDIDFGLAQDLP VQTLEMVRDSGG+EVDYP K++KMQNVSDITLFVPSNFGADSTVITYLGFKGESTK          FRHGVVECVYEAKP  EDHKAPSGETGGRNIL
Sbjct:    1 MSSCRHDHEEAGXXXXXXXXXXXXXXXXXXXXXDPEDPDGMSLFGLIDTTRVRCLNESAPGSGLNCLKPWDKRRDPQPRLESEEDDPELIIYVPFTQVVKIRAISVTGGGEGSAPSAMKVFVNRDDIDFGLAQDLPAVQTLEMVRDSGGVEVDYPTKLSKMQNVSDITLFVPSNFGADSTVITYLGFKGESTK----------FRHGVVECVYEAKPNAEDHKAPSGETGGRNIL 225          
BLAST of mRNA_H-canaliculatus_F_contig1021.228.1 vs. uniprot
Match: A0A835ZD87_9STRA (Galactose-binding domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD87_9STRA)

HSP 1 Score: 268 bits (686), Expect = 1.080e-87
Identity = 144/234 (61.54%), Postives = 175/234 (74.79%), Query Frame = 1
Query:    1 MASCRHDHEEAGXXXXXXXXXXXXXXXXXXXXDPEDPDGMSLFGLIDTTRVRCLNESVPGGGLNCLKPWDKRRDPQPRLESEEDDPELIIFVPFTQVVKIRAISVTGGGEGSAPSAMKVFVNRDDIDFGLAQDLPGVQTLEMVRDSGGIEVDYPAKITKMQNVSDITLFVPSNFGADSTVITYLGFKGESTKASENKRERREFRHGVVECVYEAKPMPEDHKAPSGETGGRNIL 702
            M++CR +HE  G      XXXXXXXXXXX   D EDP G SL+GLIDTTRVRCLNES  G  L CLKPWDKRR+P+P LES + DPEL+I VPFT+VVKI+AIS+ GG +G+APS MKV+VNRDDIDF  A+D+PGVQ++E+V DSGG+EVDYP K+ K QNVS +TLF   N GAD+TV+++LGF+GEST           FRHGVVE VYE+KPM  DHK   GE    +++
Sbjct:    1 MSACRGEHEGCGGGHDHSXXXXXXXXXXX---DIEDPTGQSLYGLIDTTRVRCLNESAVGQVLQCLKPWDKRREPEPFLESNDGDPELLIHVPFTEVVKIKAISLLGGRDGAAPSKMKVWVNRDDIDFTSAEDVPGVQSMELVADSGGVEVDYPTKLHKFQNVSSVTLFFGDNHGADTTVLSFLGFRGESTN----------FRHGVVEAVYESKPMATDHKQLGGEFTNNSVV 221          
BLAST of mRNA_H-canaliculatus_F_contig1021.228.1 vs. uniprot
Match: W7UAE5_9STRA (PITH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAE5_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.650e-65
Identity = 105/203 (51.72%), Postives = 141/203 (69.46%), Query Frame = 1
Query:   97 DPEDPDGMSLFGLIDTTRVRCLNESVPGGGLNCLKPWDKRRDPQPRLESEEDDPELIIFVPFTQVVKIRAISVTGG--GEGSAPSAMKVFVNRDDIDFGLAQDLPGVQTLEMVR------DSGGIEVDYPAKITKMQNVSDITLFVPSNFGADSTVITYLGFKGESTKASENKRERREFRHGVVECVYEAKPMPEDHKAPSGE 681
            + EDPDG S+F  IDT++VRCLNE+  G  L+  K ++KRR+P+PRL+S +DDPEL++FVPFT++VK+++I++ GG  GEG+AP+ +K+FVNRDDIDFG   +L   Q LE+V       D GGI  DYP K++K QNVS +T+F   N G D T ++Y+GFKGE T            RHGVVECVYE+ P   DHK  +GE
Sbjct:   26 EAEDPDGQSMFAAIDTSKVRCLNENEIGACLHPFKLYNKRREPEPRLDSHDDDPELLLFVPFTRIVKLKSINIIGGHAGEGTAPTKIKLFVNRDDIDFGNCNELMAAQELELVANAAAMGDGGGI--DYPLKVSKFQNVSSLTIFFSENGGGDVTSVSYVGFKGEITSV----------RHGVVECVYESAPQAADHKQDAGE 216          
BLAST of mRNA_H-canaliculatus_F_contig1021.228.1 vs. uniprot
Match: A0A7S2WKA7_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WKA7_9STRA)

HSP 1 Score: 199 bits (507), Expect = 2.060e-60
Identity = 99/202 (49.01%), Postives = 130/202 (64.36%), Query Frame = 1
Query:  100 PEDPDGMSLFGLIDTTRVRCLNESVPGGGLNCLKPWDKRRDPQPRLESEEDDPELIIFVPFTQVVKIRAISVTGGGEGSAPSAMKVFVNRDDIDFGLAQDLPGVQTLEMVRDSGGIEVDYPAKITKMQNVSDITLFVPSNFGADSTVITYLGFKGESTKASENKRERREFRHGVVECVYEAKPMPEDHKAPSGET-GGRNIL 702
            P+DPDG SLF  IDT +V CLNE   G G NC+K   ++ D    + SEEDDPELI+ +PFT  VK+++  + GG  G APS +K+F NR+D+DF  AQ++PGVQT E+  D  G E+DYP + +K QN+S +T++V  NFGADST IT+LG KGE T A          R GVVEC YEA    +DH+    +   GR+ L
Sbjct:   42 PDDPDGNSLFAYIDTEKVSCLNEREQGSGKNCIKSNVEKHDDTRFVISEEDDPELILHIPFTVAVKLKSFCIIGGANGEAPSKVKLFTNREDLDFEDAQEMPGVQTFELTEDFEG-EIDYPVRASKFQNISSLTIYVSENFGADSTKITFLGLKGEGTTA----------RRGVVECTYEASAQLKDHQTTRADNVAGRSEL 232          
BLAST of mRNA_H-canaliculatus_F_contig1021.228.1 vs. uniprot
Match: A0A2D4BK70_PYTIN (PITH domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK70_PYTIN)

HSP 1 Score: 192 bits (488), Expect = 1.010e-57
Identity = 114/219 (52.05%), Postives = 148/219 (67.58%), Query Frame = 1
Query:   10 CRHDHEEAGXXXXXXXXXXXXXXXXXXXXDPEDPDGMSLFGLIDTTRVRCLNESVPGGGLNCLKPWDKRRDPQPRLESEEDDPELIIFVPFTQVVKIRAISVTGGGEGSAPSAMKVFVNRDDIDFGLAQDLPGVQTLEMVRDSGGIEVDYPAKITKMQNVSDITLFVPSNFGADSTVITYLGFKGESTKASENKRERREFRHGVVECVYEAKPMPEDHK 666
            C+ +H+E G  XXXXXXXXXXXXXXXXX +PEDP G SLF  IDT+++R LN + P    +  KPW +R D    L S EDDPELIIF+PFT+ V I++I + GG +G+ P ++K+F+NR+DIDF  A +LP  Q LE+V D  G E+DYP ++ K Q VS +T+FV  + G D T I Y+G KGES K          +RHGVVE VYE++P   DHK
Sbjct:    3 CQREHDECGGHXXXXXXXXXXXXXXXXX-EPEDPSGDSLFPYIDTSKLRALNAAEPDHVAHPFKPWHERSDRSRYLSSNEDDPELIIFIPFTEAVSIKSICIAGGEDGAHPKSVKLFINREDIDFSNASELPAQQRLELVEDLAG-EIDYPLQVRKFQGVSSLTIFVEDSTGGDDTKIYYIGLKGESKK----------WRHGVVEAVYESRPQAADHK 209          
BLAST of mRNA_H-canaliculatus_F_contig1021.228.1 vs. uniprot
Match: K3WYX1_GLOUD (PITH domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WYX1_GLOUD)

HSP 1 Score: 183 bits (464), Expect = 4.210e-54
Identity = 95/200 (47.50%), Postives = 122/200 (61.00%), Query Frame = 1
Query:  103 EDPDGMSLFGLIDTTRVRCLNESVPGGGLNCLKPWDKRRDPQPRLESEEDDPELIIFVPFTQVVKIRAISVTGGGEGSAPSAMKVFVNRDDIDFGLAQDLPGVQTLEMVRDSGGIEVDYPAKITKMQNVSDITLFVPSNFGADSTVITYLGFKGESTKASENKRERREFRHGVVECVYEAKPMPEDHKAPSGETGGRNIL 702
            ED +G SLF  IDT+++R LN   P    +  K +  R D    L S EDDPE+IIF+PFT+ V I++I ++GG +GS P  +K+F NRDDIDF  A +LP  Q LE++ D     VDYP +I K Q VS +TLFV  N+G D + I Y+G KGES K          +RHGVVE VYE++P   DHKA     GG N L
Sbjct:   31 EDAEGDSLFPFIDTSKLRVLNAEDPARVAHPFKAFHDRHDRTRFLSSNEDDPEIIIFIPFTEAVSIKSICISGGEDGSHPKVVKMFTNRDDIDFTNANELPAQQKLELIEDLTAT-VDYPLQIRKFQGVSSLTLFVQDNYGGDDSRIYYIGLKGESKK----------WRHGVVEAVYESRPQAADHKAKGETLGGSNTL 219          
BLAST of mRNA_H-canaliculatus_F_contig1021.228.1 vs. uniprot
Match: A0A2P6TTM9_CHLSO (PITH domain-containing 1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TTM9_CHLSO)

HSP 1 Score: 182 bits (462), Expect = 6.600e-54
Identity = 91/198 (45.96%), Postives = 127/198 (64.14%), Query Frame = 1
Query:  121 SLFGLIDTTRVRCLNESVPGGGLNCLKPWDKRRD-----PQPRLESEEDDPELIIFVPFTQVVKIRAISVTGGGEGSAPSAMKVFVNRDDIDFGLAQDLPGVQTLEMVRDSGGIEVDYPAKITKMQNVSDITLFVPSNFGADSTVITYLGFKGESTKASENKRERREFRHGVVECVYEAKPMPEDHKAPSGETGGRNI 699
            SL+  IDT  VRCLNE+V G      KPW  R++     P  +L+SEEDDPEL++ VPF+  VK+  I+V GG +G++P+ +KVF+NRDD+DF  A DLP VQ  +++ + GG +++YP    K   V  + L+ PSN+GAD T I+++G +GE    SE +RE        VE VYEAKPMP+DHK P  +  G N+
Sbjct:   24 SLYKHIDTQHVRCLNEAVEGSCRKVFKPWHLRQEAPSGEPGAQLDSEEDDPELLLHVPFSGSVKLTGITVVGGPDGASPAKLKVFINRDDLDFSAAADLPAVQEWDLLENYGG-QIEYPTHAAKFNGVHSLDLYFPSNYGADRTTISFIGLRGEF---SERRRE-------AVEAVYEAKPMPQDHKVPERQGAGWNL 210          
BLAST of mRNA_H-canaliculatus_F_contig1021.228.1 vs. uniprot
Match: G4YY60_PHYSP (PITH domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YY60_PHYSP)

HSP 1 Score: 182 bits (461), Expect = 1.160e-53
Identity = 90/189 (47.62%), Postives = 121/189 (64.02%), Query Frame = 1
Query:  103 EDPDGMSLFGLIDTTRVRCLNESVPGGGLNCLKPWDKRRDPQPRLESEEDDPELIIFVPFTQVVKIRAISVTGG-GEGSAPSAMKVFVNRDDIDFGLAQDLPGVQTLEMVRDSGGIEVDYPAKITKMQNVSDITLFVPSNFGADSTVITYLGFKGESTKASENKRERREFRHGVVECVYEAKPMPEDHK 666
            ED +G SL+  IDT++VR LN   P    N  KP+ +R+D    L S EDDPE+I+F+PFT+ V I++I ++G  G+G  P A+K+F NRDDIDF  A +LP  Q L+++ D     +DYP ++ K Q VS +TLF   ++G D T I Y+G KGES K          +RHGVVECVYEA+P P DHK
Sbjct:   31 EDANGDSLYPFIDTSKVRVLNALDPEAASNPFKPFHERQDHSRFLISNEDDPEMILFIPFTEAVSIKSICISGSAGDGEHPKAVKLFTNRDDIDFSNANELPPQQRLDLIEDESA-NIDYPLQVRKFQGVSSVTLFFEDSYGGDETKIYYIGLKGESKK----------WRHGVVECVYEARPQPSDHK 208          
BLAST of mRNA_H-canaliculatus_F_contig1021.228.1 vs. uniprot
Match: H3GLD6_PHYRM (PITH domain-containing protein n=15 Tax=Phytophthora TaxID=4783 RepID=H3GLD6_PHYRM)

HSP 1 Score: 177 bits (450), Expect = 5.100e-52
Identity = 86/189 (45.50%), Postives = 122/189 (64.55%), Query Frame = 1
Query:  103 EDPDGMSLFGLIDTTRVRCLNESVPGGGLNCLKPWDKRRDPQPRLESEEDDPELIIFVPFTQVVKIRAISVTGG-GEGSAPSAMKVFVNRDDIDFGLAQDLPGVQTLEMVRDSGGIEVDYPAKITKMQNVSDITLFVPSNFGADSTVITYLGFKGESTKASENKRERREFRHGVVECVYEAKPMPEDHK 666
            ED +G SL+  IDT+++R LN   P    N  KP+ +R+D    L S +DDPE+I+F+PFT+ V I++I ++G  G+G+ P A+K+F NR+DIDF  A +LP  Q L++V D     +DYP ++ K Q VS +TLF+  ++G D   I Y+G KGES K          +RHG+VECVYEA+P P DHK
Sbjct:   30 EDANGDSLYPFIDTSKLRVLNALDPQDAANPFKPFHERQDRSRFLASNDDDPEMILFIPFTEAVSIKSICISGSTGDGTHPKAVKMFTNREDIDFSNANELPAQQKLDLVEDDTA-NIDYPLQVRKFQGVSSLTLFIEDSYGGDEMKIYYIGLKGESKK----------WRHGIVECVYEARPQPADHK 207          
BLAST of mRNA_H-canaliculatus_F_contig1021.228.1 vs. uniprot
Match: A0A5D6Y0C3_9STRA (PITH domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0C3_9STRA)

HSP 1 Score: 177 bits (449), Expect = 6.390e-52
Identity = 90/188 (47.87%), Postives = 119/188 (63.30%), Query Frame = 1
Query:  103 EDPDGMSLFGLIDTTRVRCLNESVPGGGLNCLKPWDKRRDPQPRLESEEDDPELIIFVPFTQVVKIRAISVTGGGEGSAPSAMKVFVNRDDIDFGLAQDLPGVQTLEMVRDSGGIEVDYPAKITKMQNVSDITLFVPSNFGADSTVITYLGFKGESTKASENKRERREFRHGVVECVYEAKPMPEDHK 666
            ED DG SLF  IDT+++R LN   P    +  K +  RRD    L S + DPELI+++PFT+ V I++I V+GG +G+ P  +K+F NRDDIDF  A +LP +Q LE++ D    +VDYP +I K Q VS +TLFV  NFG D + I Y+G KGES K          +RHGVVE VYE++P   DHK
Sbjct:   27 EDADGDSLFPFIDTSKLRVLNAEDPSHAAHPFKSFHDRRDRTRFLRSNDGDPELILYIPFTEAVSIKSICVSGGEDGAHPKEIKLFANRDDIDFSNAGELPALQKLELLEDFSA-DVDYPLQIRKFQGVSSLTLFVQDNFGGDDSQIYYIGLKGESKK----------WRHGVVEAVYESRPQAADHK 203          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1021.228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJA7_ECTSI1.750e-13490.64PITH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZD87_9STRA1.080e-8761.54Galactose-binding domain-like protein n=1 Tax=Trib... [more]
W7UAE5_9STRA1.650e-6551.72PITH domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S2WKA7_9STRA2.060e-6049.01Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2D4BK70_PYTIN1.010e-5752.05PITH domain-containing protein n=1 Tax=Pythium ins... [more]
K3WYX1_GLOUD4.210e-5447.50PITH domain-containing protein n=1 Tax=Globisporan... [more]
A0A2P6TTM9_CHLSO6.600e-5445.96PITH domain-containing 1 n=1 Tax=Chlorella sorokin... [more]
G4YY60_PHYSP1.160e-5347.62PITH domain-containing protein n=1 Tax=Phytophthor... [more]
H3GLD6_PHYRM5.100e-5245.50PITH domain-containing protein n=15 Tax=Phytophtho... [more]
A0A5D6Y0C3_9STRA6.390e-5247.87PITH domain-containing protein n=1 Tax=Pythium bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1021contigH-canaliculatus_F_contig1021:21268..24676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score388.7
Seed ortholog evalue2e-105
Seed eggNOG ortholog2880.D8LJA7
Preferred namePITHD1
KEGG koko:K02906,ko:K15218
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050896,GO:0051716
EggNOG free text desc.cellular response to DNA damage stimulus
EggNOG OGsKOG1730@1,KOG1730@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPITH domain
Ec32 orthologEc-02_005380.1
Exons6
Model size781
Cds size705
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928649.8917904-CDS-H-canaliculatus_F_contig1021:21267..214161622928649.8917904-CDS-H-canaliculatus_F_contig1021:21267..21416Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 21268..21416 +
1696845513.3696845-CDS-H-canaliculatus_F_contig1021:21267..214161696845513.3696845-CDS-H-canaliculatus_F_contig1021:21267..21416Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 21268..21416 +
1622928649.9033432-CDS-H-canaliculatus_F_contig1021:22022..221611622928649.9033432-CDS-H-canaliculatus_F_contig1021:22022..22161Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 22023..22161 +
1696845513.3945749-CDS-H-canaliculatus_F_contig1021:22022..221611696845513.3945749-CDS-H-canaliculatus_F_contig1021:22022..22161Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 22023..22161 +
1622928649.9202392-CDS-H-canaliculatus_F_contig1021:22606..226741622928649.9202392-CDS-H-canaliculatus_F_contig1021:22606..22674Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 22607..22674 +
1696845513.4104476-CDS-H-canaliculatus_F_contig1021:22606..226741696845513.4104476-CDS-H-canaliculatus_F_contig1021:22606..22674Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 22607..22674 +
1622928649.9348297-CDS-H-canaliculatus_F_contig1021:23325..234191622928649.9348297-CDS-H-canaliculatus_F_contig1021:23325..23419Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 23326..23419 +
1696845513.4203725-CDS-H-canaliculatus_F_contig1021:23325..234191696845513.4203725-CDS-H-canaliculatus_F_contig1021:23325..23419Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 23326..23419 +
1622928649.9479616-CDS-H-canaliculatus_F_contig1021:24010..241661622928649.9479616-CDS-H-canaliculatus_F_contig1021:24010..24166Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 24011..24166 +
1696845513.4335864-CDS-H-canaliculatus_F_contig1021:24010..241661696845513.4335864-CDS-H-canaliculatus_F_contig1021:24010..24166Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 24011..24166 +
1622928649.9641614-CDS-H-canaliculatus_F_contig1021:24501..246001622928649.9641614-CDS-H-canaliculatus_F_contig1021:24501..24600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 24502..24600 +
1696845513.4427674-CDS-H-canaliculatus_F_contig1021:24501..246001696845513.4427674-CDS-H-canaliculatus_F_contig1021:24501..24600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 24502..24600 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928649.9757397-UTR-H-canaliculatus_F_contig1021:24600..246761622928649.9757397-UTR-H-canaliculatus_F_contig1021:24600..24676Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1021 24601..24676 +
1696845513.4532173-UTR-H-canaliculatus_F_contig1021:24600..246761696845513.4532173-UTR-H-canaliculatus_F_contig1021:24600..24676Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1021 24601..24676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1021.228.1prot_H-canaliculatus_F_contig1021.228.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1021 21268..24600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1021.228.1

>prot_H-canaliculatus_F_contig1021.228.1 ID=prot_H-canaliculatus_F_contig1021.228.1|Name=mRNA_H-canaliculatus_F_contig1021.228.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=235bp
MASCRHDHEEAGGGGGGDGHDHSHGHSHDHSHDPEDPDGMSLFGLIDTTR
VRCLNESVPGGGLNCLKPWDKRRDPQPRLESEEDDPELIIFVPFTQVVKI
RAISVTGGGEGSAPSAMKVFVNRDDIDFGLAQDLPGVQTLEMVRDSGGIE
VDYPAKITKMQNVSDITLFVPSNFGADSTVITYLGFKGESTKASENKRER
REFRHGVVECVYEAKPMPEDHKAPSGETGGRNIL*
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mRNA from alignment at H-canaliculatus_F_contig1021:21268..24676+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1021.228.1 ID=mRNA_H-canaliculatus_F_contig1021.228.1|Name=mRNA_H-canaliculatus_F_contig1021.228.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3409bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1021:21268..24676+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTTCTTGCCGTCATGACCACGAGGAAGCGGGCGGCGGGGGGGGAGG AGACGGTCACGACCACAGCCACGGACACAGCCACGACCATAGCCATGACC CGGAAGACCCTGACGGGATGTCGCTCTTCGGCCTCATAGATACCACACGG TACGGAGAAGTTCGACATTGTCTGACGTATCCGTCCGTGTTGAAATCCTC GTGTTCAAAACTGCAGCAGTTGCTGTGCGAAGGCCGTTCCAGAACAGGGG CGGGATGGAGGGGGAAGTGACCTCGCTGTTGCAGCAGGGCGTCATGCGTT TGTTCCCTACCACTGACGATTCATTTCGAGGCGGAACCGGAACGAGTAGA TCGTGATCAAGGCAGGCACCACCGCGACTCATTTCTTGTCTTGGTACCAC ACTGCGTTTGCAAAAATGCCAATTTTCTTGATGTTTTGGTACGGAAGGTC TACTCTCCAGCAAGCCGGCCCAATTGGGACGAAGCTATTTCCGTCAGAAC GGATCGTGTTTCGAGAAGGTGCTAGAAACCCTGCGCGCTTCCATTGCTTT TCCAGCAGTGTACGTGGGACATTGACTACTTGTGCTTCAAAATGAAACCA TTCTTCATGTGCATGGTGAATCCACCCCCTCCCCCACCACAGAGGTGCCG GATAAGTAGGCTGTGTATGACTACGAATAAAGGCTGAACACACACCTTTG CAACCATCTCCCAAAGCACAACAGCCATACCCTTCACTTTCGTTTTTCTC TGCAGCGTCCGGTGCCTCAACGAGAGCGTCCCGGGTGGTGGACTAAACTG CCTCAAACCGTGGGATAAACGACGAGATCCGCAGCCGCGCCTCGAGAGCG AGGAAGACGACCCGGAGCTCATCATTTTCGTACCTTTCACGCAGGTGCGG GGGCAGGGTGTTACCAGGAACGCTTTTTTTGCATGCTGCCGTATTCGTAC CTGTACTCTTGCTGGCGTTTGGGCGTGTGGAGGGTATGTTCCCTCAGCTT ATATCATGCACGTTCGCTAGATGGTTTCACGGCTATAGAAGGTCCTCTCT GTGATCGCCAAAGAGCCGGTGCGGAACGCGTGTTCCTTTGTCCACATAGA CAAAGGTTCGCGATCGAAAAAACGCGTCAGTATGCTGCACGTAGCGCGAC TCGCGATGTAGAAGTCTCCTGCGTTCAATCTTTGTCGCGACTCTTCCCAA GCTCCAGTTCGTATCGCGTGGATGCATGTAAGCCGCAACGCGTTCCATTG GACCCCCATGTTTTTGCTTTAAATGCACACTGCTTGTACCGCGGGTCTTG TTCTTCCTGACGTGTTTTCCGCCTCACCCGTACGTGCAGGTGGTGAAAAT AAGAGCCATAAGCGTAACTGGTGGGGGTGAGGGGTCCGCGCCCTCTGCGA TGAAAGTGTGAGTGAAATCTCCGCCGGCTCCGTCGAAATGCTTGTCCCAG AGGAGAGGAAGAAAGGGCGCGGGAGGGAAGAAGGGAGTTGGGGATCGATC GAAACAAGTGTTCTCTCGCGGACATCCCCGAAAACCCAGCGATATCCTTC CCTCCTCTGTGCAAGTGTAAATATGGATTTCATCGCTTGGGGACTTCCCA GGCGAAAAGTTTAGTATGCTCGCCCCCACCCCCCATTTATGATCAGTCAA CCTTAACTCTCAAGCTGAGAGACCGTGCCAATATATCCCGTTGCGAACGC CACACATGGACTGCTTCTGTGTTTACGTCCAGCCTAGAAGTGCCAGTCAG TCAACTAGACCGCGATACGTCTTGCAAGATCGACAACTTGGCCAGGCATG CAGTACGATCGGGATAGAACGTGCCTTCCAGCGATCACAAACAACCTGGA TGGAGGTAGGTGTTACTGTTGGGCCTACTACCGGCGGCGAACAGCAACAT CTCCAAGGAGTTTCGATTGGGAGGGCCGTTCATACACATCCTGATGCGGC TGTTTTCGTTTGATCAGCTCTTATTTTACCCAGGATACGGATTCACGTTA GCTCTTCTCCGCTGCCGCCTTTCGACGGCTCTACGTTTTTATTTGACCCA TCTCTTAGGTTCGTCAATCGCGACGATATCGATTTCGGCCTGGCGCAAGA TCTACCGGGCGTGCAGACTCTAGAGATGGTCCGAGATAGCGGAGGCATAG AGGTGAAGGAGACCTTTCCCGTCGAATTTTTATTTTCTCACGACTTGACG CGTTGAATAGTTGGGAGGGAGCCCTTTCGCTCGATTAACATTCAGAGTTT TACAACGTCGGTGAAGAGTATTGTACGTTCATCGGAAAACGTGGGAAAAT CCCTCGCCCGCATTGTCCTCCCTTCCCTCTCTTTCGATTTCGGGTATGTT TGATAGAGAGCCGCGAGCGATATCCACCTTGCGGTGCTGCATCGACACAC GGCAGAGAGTCCAATACAACCACGACCATCAAGGTTTGCTGTCGTCACTT GCCTCAGATCGTGACCGCTTTGGACGCAAAGTGCTGTTCTCATGCTGCAC ACGTGATGTATCTCTCTTTCACGACTAGATCATCGAGCGCCCCGTCCAGC CTCGGAAGAAAGCGTCCATCAAGTATTTACGGGGCGGATTTTCGGGACCG ATTTGTTATCCCACCCCTTTATCCATTGCCCGCGAGGGCTGGATTCCACG CCAAGACCGCGCGACGCCGTTGCCACACGTCGGACGGATCCATGAATGAT GCTAGGAAAATGTTGCCCTCTCGGTTGTGTTTTTTCGCGGAAGGTTGACT ACCCGGCGAAGATAACGAAGATGCAGAACGTGAGCGACATCACGTTGTTC GTCCCGTCCAACTTCGGGGCCGACTCAACTGTCATCACTTACCTCGGCTT CAAGGGCGAGAGCACCAAGGCAAGCGAAAACAAACGAGAGCGGAGGGAAG TTCAAAAAAAGAGAGCAGCAAAAGGAGGAAGCAACGCCGTCCGCATGATC CCCTTTTTCGAAACTACTTTCACTGAACTTCCACATGCGTGGCCGTCGCT CCGAGAGATCCAGTGATTTGTTATCGCCTGCGACTGTTTGAGTCTGATCC TGCTGTGAAGTTTCCGGTGGCGGTGACTCGACCAACAGCAGTAGTGTGGC TTATCCTGGGTGGACAGAAGTTTCTGAGACGTGAATCAAAGGACCACATC AAGCCCTCTCCTTCGTTTTCTCTCTTACCTGTTTGATGATTCCTTCGCCA TTCCCGTCGCCCCATCGGGTACGTCCAACAACAGTTCCGACATGGTGTGG TGGAGTGCGTGTACGAGGCCAAGCCGATGCCGGAGGATCATAAGGCGCCT TCTGGCGAAACTGGCGGGAGAAATATCCTCTGACAGCAGCAGAAGACGTT TGCAAATCATGCAGCATTCTTGAGATTCTGAGTGCACCACGCCGCCTCTC ATGTGAAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1021:21268..24676+

>mRNA_H-canaliculatus_F_contig1021.228.1 ID=mRNA_H-canaliculatus_F_contig1021.228.1|Name=mRNA_H-canaliculatus_F_contig1021.228.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1410bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1021:21268..24676+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTTCTTGCCGTCATGACCACGAGGAAGCGGGCGGCGGGGGGGGAGG
AGACGGTCACGACCACAGCCACGGACACAGCCACGACCATAGCCATGACC
CGGAAGACCCTGACGGGATGTCGCTCTTCGGCCTCATAGATACCACACGA
TGGCTTCTTGCCGTCATGACCACGAGGAAGCGGGCGGCGGGGGGGGAGGA
GACGGTCACGACCACAGCCACGGACACAGCCACGACCATAGCCATGACCC
GGAAGACCCTGACGGGATGTCGCTCTTCGGCCTCATAGATACCACACGCG
TCCGGTGCCTCAACGAGAGCGTCCCGGGTGGTGGACTAAACTGCCTCAAA
CCGTGGGATAAACGACGAGATCCGCAGCCGCGCCTCGAGAGCGAGGAAGA
CGACCCGGAGCTCATCATTTTCGTACCTTTCACGCAGCGTCCGGTGCCTC
AACGAGAGCGTCCCGGGTGGTGGACTAAACTGCCTCAAACCGTGGGATAA
ACGACGAGATCCGCAGCCGCGCCTCGAGAGCGAGGAAGACGACCCGGAGC
TCATCATTTTCGTACCTTTCACGCAGGTGGTGAAAATAAGAGCCATAAGC
GTAACTGGTGGGGGTGAGGGGTCCGCGCCCTCTGCGATGAAAGTGTGGTG
AAAATAAGAGCCATAAGCGTAACTGGTGGGGGTGAGGGGTCCGCGCCCTC
TGCGATGAAAGTGTTCGTCAATCGCGACGATATCGATTTCGGCCTGGCGC
AAGATCTACCGGGCGTGCAGACTCTAGAGATGGTCCGAGATAGCGGAGGC
ATAGAGGTTCGTCAATCGCGACGATATCGATTTCGGCCTGGCGCAAGATC
TACCGGGCGTGCAGACTCTAGAGATGGTCCGAGATAGCGGAGGCATAGAG
GTTGACTACCCGGCGAAGATAACGAAGATGCAGAACGTGAGCGACATCAC
GTTGTTCGTCCCGTCCAACTTCGGGGCCGACTCAACTGTCATCACTTACC
TCGGCTTCAAGGGCGAGAGCACCAAGGCAAGCGAAAACAAACGAGAGCGG
AGGGAAGTTGACTACCCGGCGAAGATAACGAAGATGCAGAACGTGAGCGA
CATCACGTTGTTCGTCCCGTCCAACTTCGGGGCCGACTCAACTGTCATCA
CTTACCTCGGCTTCAAGGGCGAGAGCACCAAGGCAAGCGAAAACAAACGA
GAGCGGAGGGAATTCCGACATGGTGTGGTGGAGTGCGTGTACGAGGCCAA
GCCGATGCCGGAGGATCATAAGGCGCCTTCTGGCGAAACTGGCGGGAGAA
ATATCCTCTGATTCCGACATGGTGTGGTGGAGTGCGTGTACGAGGCCAAG
CCGATGCCGGAGGATCATAAGGCGCCTTCTGGCGAAACTGGCGGGAGAAA
TATCCTCTGA
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