mRNA_H-canaliculatus_F_contig12700.2254.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12700.2254.1
Unique NamemRNA_H-canaliculatus_F_contig12700.2254.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12700.2254.1 vs. uniprot
Match: A0A6H5JHJ8_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ8_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.400e-32
Identity = 69/100 (69.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:  100 AMSLLKHIYALQAPQSSPWDRPMLRALSTHQVGAGGGDLAVTYYVYTSRLLFELIADPAISGLMKGLQPVAHVTPPAVLEEQPVQFISNRPSFLRPTSAA 399
            A  LL+H+YALQ   SSPW RPMLRALSTH     G  LAVTY++YTSRLLFELIADPAISG+MK L+PVA VTPPAV+EEQPVQF+S RP   R  +A+
Sbjct:  187 AADLLQHVYALQ---SSPWKRPMLRALSTHVPTDYG--LAVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPGVRRTPAAS 281
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BLAST of mRNA_H-canaliculatus_F_contig12700.2254.1 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.620e-30
Identity = 74/117 (63.25%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:   79 EGRGRGRAMSLLKHIYAL----------QAPQSSPWDRPMLRALSTHQVGAGGGDLAVTYYVYTSRLLFELIADPAISGLMKGLQPVAHVTPPAVLEEQPVQFISNRPSFLRPTSAA 399
            +GRGR  A + L+   A           Q+PQSSPW RPMLRALSTH V A  G L VTY++YTSRLLFELIADPAISG+MK L+PVA VTPPAV+E+QPVQF+S RP  LR T AA
Sbjct:   50 DGRGRRPAATHLRSPAARSARVDDRHGPQSPQSSPWKRPMLRALSTH-VSAEDG-LTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEKQPVQFVSTRPG-LRRTPAA 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12700.2254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHJ8_9PHAE1.400e-3269.00SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
D7G2K8_ECTSI1.620e-3063.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12700contigH-canaliculatus_F_contig12700:418..2438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue9.9e-27
Seed eggNOG ortholog2880.D7G2K8
KEGG koko:K15710,ko:K15711
EggNOG free text desc.pyrimidine dimer repair by nucleotide-excision repair
EggNOG OGsCOG0141@1,COG0553@1,KOG1001@2759,KOG1002@2759
EC2.3.2.27
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size496
Cds size495
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12700.2254.1prot_H-canaliculatus_F_contig12700.2254.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12700 418..2438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.7145832-CDS-H-canaliculatus_F_contig12700:417..5521622928991.7145832-CDS-H-canaliculatus_F_contig12700:417..552Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12700 418..552 +
1696845641.3984509-CDS-H-canaliculatus_F_contig12700:417..5521696845641.3984509-CDS-H-canaliculatus_F_contig12700:417..552Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12700 418..552 +
1622928991.731386-CDS-H-canaliculatus_F_contig12700:1268..14481622928991.731386-CDS-H-canaliculatus_F_contig12700:1268..1448Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12700 1269..1448 +
1696845641.4106998-CDS-H-canaliculatus_F_contig12700:1268..14481696845641.4106998-CDS-H-canaliculatus_F_contig12700:1268..1448Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12700 1269..1448 +
1622928991.747641-CDS-H-canaliculatus_F_contig12700:2258..24381622928991.747641-CDS-H-canaliculatus_F_contig12700:2258..2438Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12700 2259..2438 +
1696845641.4229183-CDS-H-canaliculatus_F_contig12700:2258..24381696845641.4229183-CDS-H-canaliculatus_F_contig12700:2258..2438Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12700 2259..2438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12700.2254.1

>prot_H-canaliculatus_F_contig12700.2254.1 ID=prot_H-canaliculatus_F_contig12700.2254.1|Name=mRNA_H-canaliculatus_F_contig12700.2254.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=165bp
MNGSSAGDGATSRSRSDEGWTPGYLPEGRGRGRAMSLLKHIYALQAPQSS
PWDRPMLRALSTHQVGAGGGDLAVTYYVYTSRLLFELIADPAISGLMKGL
QPVAHVTPPAVLEEQPVQFISNRPSFLRPTSAASTTAATAAPPCRSSNNN
GSSAASTEGCLSRTG
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mRNA from alignment at H-canaliculatus_F_contig12700:418..2438+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12700.2254.1 ID=mRNA_H-canaliculatus_F_contig12700.2254.1|Name=mRNA_H-canaliculatus_F_contig12700.2254.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2021bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12700:418..2438+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAATGGCAGTAGTGCTGGTGATGGGGCTACTTCGCGTTCTCGCAGTGA
CGAAGGGTGGACGCCCGGTTACCTACCGGAAGGGAGAGGCCGAGGGAGAG
CCATGTCGCTGCTGAAGCACATATACGCGCTCCAGGTGGGTGCTGTTCGA
TTCCGCGCGTGTGGATATGTTCCCGTTGTCTTGATGGAGATTTTCCTTTT
TTTGCGCCGCTGCCACGTATGATTGGTGCATTTTCTGTGCTTCAGGGTCC
CTGCTGGCTGTTCCGGCGGAAAATTCCAAGTCGTGCGGCAAGGTGCCGGT
ACAGTAGTCTGCATCACTTGCCGATAGCTTGCCGCGCTTTACTGCGTAGG
GTGGATTTTCACCGTCCCGAGCGCTGGTGCACCGCGGTTTTCTATACCAC
GCCGCGCAAATGACGCATTCCAAATTCGCACCTCTAAACGCATCTCTTCC
TGCGGAGATCCCCAGCCCCCCTCCGACGTTTTCTTTCTCTCTCTCTCTCT
CTCCTGTGCGCACGTTGGGTGTTGGTGCAAGAGCCGGGACGTCGCTGTTG
GTTCTGCTTGTGCTCCTTGTTTTGATGCCACCGTCGTTGTTGCTGTTGAC
AATTTCATGCTGATGCTGTTGTCCTTGTTCTCTTGTTCTTGTTTATGGGA
TCTGTCGGTTCCAAAATAGGACTATTGCTGTGGATTGTTGCTGTCGTCGC
CGGCGGTGTGGTTTCCGCTGATGATGCTCTCGCACATGTCGTCGTCGTCG
TCATGGTTGTCATCCTCGATGGTTGTGATGTCACCACCGCCCTCAATCAT
GTTGCTTTCGTTGCCTCTGCTGCTGCTGCTGCTGCTGCTGTTCCACCGCA
GGCGCCCCAATCTTCCCCTTGGGACCGGCCGATGCTGAGGGCCCTGAGCA
CGCACCAAGTAGGCGCGGGGGGTGGTGATCTTGCCGTTACGTACTACGTC
TACACCAGCCGCCTGCTGTTCGAGCTCATCGCAGACCCCGCCATCAGCGG
GTTGATGAAGGGCCTCCAGCCCGTGGCGCACGTAAGTTGTTGCCGCGGCT
GTGATCGTCGCAACGTATCTCGTGTCAGTCGGTGTCATGTTGGTCGCTGC
CTGCGTGTCATTTTGCTTCGGTTTGGTCTGGTCTGGTTTGGTTTGGTTTG
GTTTGGTTTGGCTTGGTTTGGTTTGGTTTGGCTTGGTTTTCCTTTTCGGT
TTCCCTTGCTTTACTTGTGTGATTGCCCGCAGCGGCGTGGTTTCGTCACT
TGTCCTTTTTACGAGACCGCGGTCGTTAATCGCTGTCTCTCGCATCAGTT
TCGTGGTGATTCGGTGTCCCGGAGGGGTGCGGTAGGGGGGCGGGGGGGGG
TCCTCACCATTGTGTGTGACGGCGGTGGTCTTTCATGGTGCACGTGGCCT
CAGGTCAGCGTGGTTTCCCTGCTGTTCTCGTCCGTCCGCTGTGGCCATCC
CGTGACTTCCACGGTGACTTGATCTCCTAGTGGATGGATTCGAGTGGCGT
CTCGTTCTGGATCCGGTGTATATGTAATGTCTGGGCATATATATCGTCAT
GGCCTCGTTGCTGTCGCGGATCGCGTTGCTGTCGCTGTTGCCGTTGCTGT
GAGTGGTTTGAGCTACCAGCATCGTCTCAGTTTTGTTGCTACCCGTGGCT
CCGCTCCTGCTGTCGCTGAGTGATCCTCTGTTTGGCGCAAGCAAAGGCAG
CGGCGGCGGCGGCGGCGGCAGCAGCAGCGAGAGCAACCGTGCTTCGCCGG
CAAGTCCACGTAAGTGTTTGCCCCCCAGCCAGTCGTGCTTGCCCCGCCGA
ACACGAAACAAACGAACGAATAAACGCCTCTTTGCTCGCAGGTGACCCCC
CCCGCCGTCCTCGAGGAGCAGCCGGTACAGTTCATCTCCAATCGGCCCTC
TTTCCTGCGCCCTACTTCCGCCGCAAGCACTACGGCGGCGACGGCCGCAC
CCCCCTGTAGGAGCAGCAACAACAATGGATCAAGCGCCGCTTCGACCGAA
GGATGCCTCTCTAGAACCGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12700:418..2438+

>mRNA_H-canaliculatus_F_contig12700.2254.1 ID=mRNA_H-canaliculatus_F_contig12700.2254.1|Name=mRNA_H-canaliculatus_F_contig12700.2254.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=990bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12700:418..2438+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAATGGCAGTAGTGCTGGTGATGGGGCTACTTCGCGTTCTCGCAGTGA
CGAAGGGTGGACGCCCGGTTACCTACCGGAAGGGAGAGGCCGAGGGAGAG
CCATGTCGCTGCTGAAGCACATATACGCGCTCCAGATGAATGGCAGTAGT
GCTGGTGATGGGGCTACTTCGCGTTCTCGCAGTGACGAAGGGTGGACGCC
CGGTTACCTACCGGAAGGGAGAGGCCGAGGGAGAGCCATGTCGCTGCTGA
AGCACATATACGCGCTCCAGGCGCCCCAATCTTCCCCTTGGGACCGGCCG
ATGCTGAGGGCCCTGAGCACGCACCAAGTAGGCGCGGGGGGTGGTGATCT
TGCCGTTACGTACTACGTCTACACCAGCCGCCTGCTGTTCGAGCTCATCG
CAGACCCCGCCATCAGCGGGTTGATGAAGGGCCTCCAGCCCGTGGCGCAC
GCGCCCCAATCTTCCCCTTGGGACCGGCCGATGCTGAGGGCCCTGAGCAC
GCACCAAGTAGGCGCGGGGGGTGGTGATCTTGCCGTTACGTACTACGTCT
ACACCAGCCGCCTGCTGTTCGAGCTCATCGCAGACCCCGCCATCAGCGGG
TTGATGAAGGGCCTCCAGCCCGTGGCGCACGTGACCCCCCCCGCCGTCCT
CGAGGAGCAGCCGGTACAGTTCATCTCCAATCGGCCCTCTTTCCTGCGCC
CTACTTCCGCCGCAAGCACTACGGCGGCGACGGCCGCACCCCCCTGTAGG
AGCAGCAACAACAATGGATCAAGCGCCGCTTCGACCGAAGGATGCCTCTC
TAGAACCGGTGTGACCCCCCCCGCCGTCCTCGAGGAGCAGCCGGTACAGT
TCATCTCCAATCGGCCCTCTTTCCTGCGCCCTACTTCCGCCGCAAGCACT
ACGGCGGCGACGGCCGCACCCCCCTGTAGGAGCAGCAACAACAATGGATC
AAGCGCCGCTTCGACCGAAGGATGCCTCTCTAGAACCGGT
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