mRNA_H-canaliculatus_F_contig1021.227.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1021.227.1
Unique NamemRNA_H-canaliculatus_F_contig1021.227.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1021.227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1021contigH-canaliculatus_F_contig1021:17453..18014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1021.227.1prot_H-canaliculatus_F_contig1021.227.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1021 17501..17818 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928649.5370817-UTR-H-canaliculatus_F_contig1021:17452..175001622928649.5370817-UTR-H-canaliculatus_F_contig1021:17452..17500Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1021 17453..17500 +
1696845513.1306183-UTR-H-canaliculatus_F_contig1021:17452..175001696845513.1306183-UTR-H-canaliculatus_F_contig1021:17452..17500Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1021 17453..17500 +
1622928649.5588017-UTR-H-canaliculatus_F_contig1021:17818..180141622928649.5588017-UTR-H-canaliculatus_F_contig1021:17818..18014Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1021 17819..18014 +
1696845513.151417-UTR-H-canaliculatus_F_contig1021:17818..180141696845513.151417-UTR-H-canaliculatus_F_contig1021:17818..18014Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1021 17819..18014 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928649.5477436-CDS-H-canaliculatus_F_contig1021:17500..178181622928649.5477436-CDS-H-canaliculatus_F_contig1021:17500..17818Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 17501..17818 +
1696845513.140076-CDS-H-canaliculatus_F_contig1021:17500..178181696845513.140076-CDS-H-canaliculatus_F_contig1021:17500..17818Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 17501..17818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1021.227.1

>prot_H-canaliculatus_F_contig1021.227.1 ID=prot_H-canaliculatus_F_contig1021.227.1|Name=mRNA_H-canaliculatus_F_contig1021.227.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=106bp
MRGWGKNMGPASGGHISQARNHLFLSSNMPGMTSAPTRISSVFTPFRIAR
VIYVRCPTRSDRKGRVRLWGQVSVLRRTLPQSLQIFIAVPLGLMPISAPF
RGKVA*
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mRNA from alignment at H-canaliculatus_F_contig1021:17453..18014+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1021.227.1 ID=mRNA_H-canaliculatus_F_contig1021.227.1|Name=mRNA_H-canaliculatus_F_contig1021.227.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=562bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1021:17453..18014+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGATCATGTGAGGGGGTCGAGGACGGGGGAATTAGTAAGCCGACGGAT
GAGAGGTTGGGGGAAGAATATGGGGCCGGCCTCCGGAGGGCACATATCTC
AGGCAAGGAATCACTTGTTTCTCTCAAGCAACATGCCTGGGATGACTTCC
GCTCCCACGAGGATCTCATCGGTTTTCACTCCGTTTAGAATCGCTCGAGT
CATCTACGTTCGGTGCCCCACGCGATCAGACAGGAAGGGAAGGGTTCGAC
TTTGGGGACAAGTGTCCGTTTTGCGTCGCACCCTTCCCCAGAGCCTTCAA
ATTTTCATCGCAGTTCCGTTGGGGTTGATGCCAATCTCCGCACCATTCAG
AGGCAAAGTTGCCTAGAAGGGCTTGGCGTGTGTTCCCTCCCCCCGGGACA
AAAAAAGGGGCCATCCACCCCCACCAAAAGCGGCAACGCTCTGGAAACGT
CATTACAGGGTTGCACTCGTCTAACACTTTTTCCGTGGTCGACCCTTCAT
GCTAGGTCAACCAGGACCGCAGAGGAAGGTTTCCCTCCACTCTTTTGAAA
CTCAGGGACACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1021:17453..18014+

>mRNA_H-canaliculatus_F_contig1021.227.1 ID=mRNA_H-canaliculatus_F_contig1021.227.1|Name=mRNA_H-canaliculatus_F_contig1021.227.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=636bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1021:17453..18014+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGAGGTTGGGGGAAGAATATGGGGCCGGCCTCCGGAGGGCACATATC
TCAGGCAAGGAATCACTTGTTTCTCTCAAGCAACATGCCTGGGATGACTT
CCGCTCCCACGAGGATCTCATCGGTTTTCACTCCGTTTAGAATCGCTCGA
GTCATCTACGTTCGGTGCCCCACGCGATCAGACAGGAAGGGAAGGGTTCG
ACTTTGGGGACAAGTGTCCGTTTTGCGTCGCACCCTTCCCCAGAGCCTTC
AAATTTTCATCGCAGTTCCGTTGGGGTTGATGCCAATCTCCGCACCATTC
AGAGGCAAAGTTGCCTAGATGAGAGGTTGGGGGAAGAATATGGGGCCGGC
CTCCGGAGGGCACATATCTCAGGCAAGGAATCACTTGTTTCTCTCAAGCA
ACATGCCTGGGATGACTTCCGCTCCCACGAGGATCTCATCGGTTTTCACT
CCGTTTAGAATCGCTCGAGTCATCTACGTTCGGTGCCCCACGCGATCAGA
CAGGAAGGGAAGGGTTCGACTTTGGGGACAAGTGTCCGTTTTGCGTCGCA
CCCTTCCCCAGAGCCTTCAAATTTTCATCGCAGTTCCGTTGGGGTTGATG
CCAATCTCCGCACCATTCAGAGGCAAAGTTGCCTAG
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