mRNA_H-canaliculatus_F_contig1021.225.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1021.225.1
Unique NamemRNA_H-canaliculatus_F_contig1021.225.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1021.225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1021contigH-canaliculatus_F_contig1021:5117..5755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size624
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1021.225.1prot_H-canaliculatus_F_contig1021.225.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1021 5326..5703 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928649.4429018-UTR-H-canaliculatus_F_contig1021:5116..53251622928649.4429018-UTR-H-canaliculatus_F_contig1021:5116..5325Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1021 5117..5325 +
1696845513.0874643-UTR-H-canaliculatus_F_contig1021:5116..53251696845513.0874643-UTR-H-canaliculatus_F_contig1021:5116..5325Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1021 5117..5325 +
1622928649.4867342-UTR-H-canaliculatus_F_contig1021:5703..57551622928649.4867342-UTR-H-canaliculatus_F_contig1021:5703..5755Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1021 5704..5755 +
1696845513.1173322-UTR-H-canaliculatus_F_contig1021:5703..57551696845513.1173322-UTR-H-canaliculatus_F_contig1021:5703..5755Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1021 5704..5755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928649.45943-CDS-H-canaliculatus_F_contig1021:5325..54601622928649.45943-CDS-H-canaliculatus_F_contig1021:5325..5460Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 5326..5460 +
1696845513.0996192-CDS-H-canaliculatus_F_contig1021:5325..54601696845513.0996192-CDS-H-canaliculatus_F_contig1021:5325..5460Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 5326..5460 +
1622928649.4704144-CDS-H-canaliculatus_F_contig1021:5475..57031622928649.4704144-CDS-H-canaliculatus_F_contig1021:5475..5703Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 5476..5703 +
1696845513.1084435-CDS-H-canaliculatus_F_contig1021:5475..57031696845513.1084435-CDS-H-canaliculatus_F_contig1021:5475..5703Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1021 5476..5703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1021.225.1

>prot_H-canaliculatus_F_contig1021.225.1 ID=prot_H-canaliculatus_F_contig1021.225.1|Name=mRNA_H-canaliculatus_F_contig1021.225.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp
MPLLRNDRHSWLTVLTLLRENGSSETVCRLSHHGLLRRPPSSTKRTCPVG
KWTFADSLCTQAGSLNVSILNRNPMQTSPLIRSALLLWVVATYLASTNAR
KVGSRTTASNPPSGATAKLL*
back to top

mRNA from alignment at H-canaliculatus_F_contig1021:5117..5755+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1021.225.1 ID=mRNA_H-canaliculatus_F_contig1021.225.1|Name=mRNA_H-canaliculatus_F_contig1021.225.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=639bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1021:5117..5755+ (Hapterophycus canaliculatus Oshoro5f female)
GGGAAGGAAAAGGCTTGGAACGAAATAAGTTGTGGTGCTGGTGCGGATGC
AGGATGCTTCTCGTGGGATCTTTGAACTGCGTCTTGCTTGAATGAAGTGT
CAAGAGAGGTAGAGGAGCATAAAATAGTCTTGAAACCTATCTCAGGGGAA
ACTCGTGAGGCTTGGGGCGATGCTCTTTCATACGCAAAACGCTGTTCGTG
GTGCTTGCCATGCCTCTCCTGCGAAATGACCGACATTCTTGGTTGACAGT
TTTAACTCTGCTCCGAGAGAATGGCAGCAGCGAAACGGTCTGTCGGCTCT
CCCACCACGGTTTACTGAGAAGGCCACCCTCAAGCACAAAACGTGCGTGG
CTCCTGAAGACTTGTCCCGTAGGAAAATGGACATTCGCAGATTCATTGTG
CACACAAGCGGGCAGTCTGAACGTGTCCATCCTAAATAGGAATCCGATGC
AAACGAGCCCGCTGATTCGGTCTGCTCTTCTTCTATGGGTCGTGGCGACT
TATCTTGCAAGCACCAACGCCAGAAAGGTCGGCTCTCGCACCACAGCATC
CAACCCACCATCTGGAGCAACAGCCAAACTACTGTAAACAGAAAAATATG
TGAAGATGATTCACTCGCCTTTTTCCCGGTTGAGCGTCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1021:5117..5755+

>mRNA_H-canaliculatus_F_contig1021.225.1 ID=mRNA_H-canaliculatus_F_contig1021.225.1|Name=mRNA_H-canaliculatus_F_contig1021.225.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1021:5117..5755+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTCTCCTGCGAAATGACCGACATTCTTGGTTGACAGTTTTAACTCT
GCTCCGAGAGAATGGCAGCAGCGAAACGGTCTGTCGGCTCTCCCACCACG
GTTTACTGAGAAGGCCACCCTCAAGCACAAAACGTATGCCTCTCCTGCGA
AATGACCGACATTCTTGGTTGACAGTTTTAACTCTGCTCCGAGAGAATGG
CAGCAGCGAAACGGTCTGTCGGCTCTCCCACCACGGTTTACTGAGAAGGC
CACCCTCAAGCACAAAACGTACTTGTCCCGTAGGAAAATGGACATTCGCA
GATTCATTGTGCACACAAGCGGGCAGTCTGAACGTGTCCATCCTAAATAG
GAATCCGATGCAAACGAGCCCGCTGATTCGGTCTGCTCTTCTTCTATGGG
TCGTGGCGACTTATCTTGCAAGCACCAACGCCAGAAAGGTCGGCTCTCGC
ACCACAGCATCCAACCCACCATCTGGAGCAACAGCCAAACTACTGTAAAC
TTGTCCCGTAGGAAAATGGACATTCGCAGATTCATTGTGCACACAAGCGG
GCAGTCTGAACGTGTCCATCCTAAATAGGAATCCGATGCAAACGAGCCCG
CTGATTCGGTCTGCTCTTCTTCTATGGGTCGTGGCGACTTATCTTGCAAG
CACCAACGCCAGAAAGGTCGGCTCTCGCACCACAGCATCCAACCCACCAT
CTGGAGCAACAGCCAAACTACTGTAA
back to top