mRNA_H-canaliculatus_F_contig12681.2232.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12681.2232.1
Unique NamemRNA_H-canaliculatus_F_contig12681.2232.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12681.2232.1 vs. uniprot
Match: D8LRC0_ECTSI (W2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRC0_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.970e-40
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 MSGNINISGTEPIDDPEYRYKMPRVIGKVEGRGNGIKTVIFNVMDLSLALKRDPGEVCKFFGTELGAQAR 210
            MSGNINISGTEPIDDPEYRYKMPRVIGKVEGRGNGIKTVIFNVMDLSLALKRDPGEVCKFFGTELGAQ R
Sbjct:    1 MSGNINISGTEPIDDPEYRYKMPRVIGKVEGRGNGIKTVIFNVMDLSLALKRDPGEVCKFFGTELGAQTR 70
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BLAST of mRNA_H-canaliculatus_F_contig12681.2232.1 vs. uniprot
Match: A0A1V9ZS27_9STRA (Eukaryotic translation initiation factor 5 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZS27_9STRA)

HSP 1 Score: 115 bits (289), Expect = 6.930e-29
Identity = 53/76 (69.74%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:   10 NINISGTEPIDDPEYRYKMPRVIGKVEGRGNGIKTVIFNVMDLSLALKRDPGEVCKFFGTELGAQARLP-RTEPAV 234
            NINI+GT+P+DDPEYRYKMPR+I K+EGRGNGIKTV+ N ++L++AL R PGEV KFFGTELGAQ++   +TE AV
Sbjct:    3 NINIAGTQPVDDPEYRYKMPRLIAKIEGRGNGIKTVVVNAVELAMALHRTPGEVTKFFGTELGAQSKYDEKTERAV 78
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BLAST of mRNA_H-canaliculatus_F_contig12681.2232.1 vs. uniprot
Match: T0RP61_SAPDV (Translation initiation factor 5 n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RP61_SAPDV)

HSP 1 Score: 114 bits (285), Expect = 2.750e-28
Identity = 52/76 (68.42%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:   10 NINISGTEPIDDPEYRYKMPRVIGKVEGRGNGIKTVIFNVMDLSLALKRDPGEVCKFFGTELGAQARLP-RTEPAV 234
            NINI+GT P+DDPEYRYKMPR++ K+EGRGNGIKTV+ N ++L++AL R PGEV KFFGTELGAQ++   +TE AV
Sbjct:    3 NINIAGTTPVDDPEYRYKMPRLVAKIEGRGNGIKTVVVNAVELAMALHRTPGEVTKFFGTELGAQSKYDDKTERAV 78
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BLAST of mRNA_H-canaliculatus_F_contig12681.2232.1 vs. uniprot
Match: A0A7S2KDW7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KDW7_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.050e-27
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:   13 INISGTEPIDDPEYRYKMPRVIGKVEGRGNGIKTVIFNVMDLSLALKRDPGEVCKFFGTELGAQ 204
            INISGT P+DDPEYRYKMP+V+GK+EGRGNG KTVI N+ +L+L+L RDPGEV KFFGTELGAQ
Sbjct:    7 INISGTSPVDDPEYRYKMPKVVGKLEGRGNGSKTVIVNISELALSLHRDPGEVNKFFGTELGAQ 70
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BLAST of mRNA_H-canaliculatus_F_contig12681.2232.1 vs. uniprot
Match: A0A3L6UPW2_9STRA (W2 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UPW2_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.490e-27
Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:   10 NINISGTEPIDDPEYRYKMPRVIGKVEGRGNGIKTVIFNVMDLSLALKRDPGEVCKFFGTELGAQARLP-RTEPAV 234
            NINI+GT P+DDPEYRYKMPR++ K+EGRGNGIKTV+ N ++++ AL R PGEV KFFGTELGAQ++    TE AV
Sbjct:    3 NINIAGTTPVDDPEYRYKMPRLVAKIEGRGNGIKTVVVNAVEIASALHRSPGEVTKFFGTELGAQSKFDDATERAV 78
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12681.2232.1 vs. uniprot
Match: A0A7S2RDL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RDL5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.870e-27
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 MSGNINISGTEPIDDPEYRYKMPRVIGKVEGRGNGIKTVIFNVMDLSLALKRDPGEVCKFFGTELGAQ 204
            M+  INI GT P++DPEYRYKMP +IGKVEGRGNGIKT I N+  ++LAL RDPGEV KFFG ELGAQ
Sbjct:    1 MASIINIQGTTPVEDPEYRYKMPSIIGKVEGRGNGIKTAIPNMTQVALALHRDPGEVTKFFGCELGAQ 68
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BLAST of mRNA_H-canaliculatus_F_contig12681.2232.1 vs. uniprot
Match: A0A418AZA0_9STRA (W2 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AZA0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.870e-27
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:   10 NINISGTEPIDDPEYRYKMPRVIGKVEGRGNGIKTVIFNVMDLSLALKRDPGEVCKFFGTELGAQARLP-RTEPAV 234
            NINI+GT P+DDPEYRYKMPR+I K+EGRGNGIKTV+ N ++++ AL R PGEV KFFGTELGAQ++    TE AV
Sbjct:  206 NINIAGTTPVDDPEYRYKMPRLIAKIEGRGNGIKTVVVNAVEIASALHRSPGEVTKFFGTELGAQSKFDDATERAV 281
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12681.2232.1 vs. uniprot
Match: A0A397BP15_9STRA (W2 domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BP15_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.360e-27
Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:   10 NINISGTEPIDDPEYRYKMPRVIGKVEGRGNGIKTVIFNVMDLSLALKRDPGEVCKFFGTELGAQARLP-RTEPAV 234
            NINI+GT P+DDPEYRYKMPR++ K+EGRGNGIKTV+ N ++++ AL R PGEV KFFGTELGAQ++    TE AV
Sbjct:  180 NINIAGTTPVDDPEYRYKMPRLVAKIEGRGNGIKTVVVNAVEIASALHRSPGEVTKFFGTELGAQSKFDDATERAV 255
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12681.2232.1 vs. uniprot
Match: A0A6G0WLN5_9STRA (W2 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLN5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.550e-27
Identity = 52/76 (68.42%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:   10 NINISGTEPIDDPEYRYKMPRVIGKVEGRGNGIKTVIFNVMDLSLALKRDPGEVCKFFGTELGAQARLPR-TEPAV 234
            NINI+GT P+DDPEYRYKMPR+  K+EGRGNGIKTV+ N +D++ AL R PGEV KFFGTELGAQ++    TE AV
Sbjct:    3 NINIAGTTPVDDPEYRYKMPRLQAKIEGRGNGIKTVVVNAVDIASALHRTPGEVTKFFGTELGAQSKYDEATERAV 78
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12681.2232.1 vs. uniprot
Match: A0A418F1A2_9STRA (W2 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F1A2_9STRA)

HSP 1 Score: 111 bits (278), Expect = 7.140e-27
Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:   10 NINISGTEPIDDPEYRYKMPRVIGKVEGRGNGIKTVIFNVMDLSLALKRDPGEVCKFFGTELGAQARLP-RTEPAV 234
            NINI+GT P+DDPEYRYKMPR++ K+EGRGNGIKTV+ N ++++ AL R PGEV KFFGTELGAQ++    TE AV
Sbjct:  464 NINIAGTTPVDDPEYRYKMPRLVAKIEGRGNGIKTVVVNAVEIASALHRSPGEVTKFFGTELGAQSKFDDATERAV 539
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12681.2232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRC0_ECTSI1.970e-4098.57W2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A1V9ZS27_9STRA6.930e-2969.74Eukaryotic translation initiation factor 5 n=1 Tax... [more]
T0RP61_SAPDV2.750e-2868.42Translation initiation factor 5 n=1 Tax=Saprolegni... [more]
A0A7S2KDW7_9STRA1.050e-2778.13Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A3L6UPW2_9STRA2.490e-2767.11W2 domain-containing protein n=1 Tax=Aphanomyces a... [more]
A0A7S2RDL5_9STRA2.870e-2772.06Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A418AZA0_9STRA4.870e-2768.42W2 domain-containing protein n=2 Tax=Aphanomyces i... [more]
A0A397BP15_9STRA6.360e-2767.11W2 domain-containing protein n=7 Tax=Aphanomyces a... [more]
A0A6G0WLN5_9STRA6.550e-2768.42W2 domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A418F1A2_9STRA7.140e-2767.11W2 domain-containing protein n=4 Tax=Aphanomyces a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12681contigH-canaliculatus_F_contig12681:239..1046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.2e-32
Seed eggNOG ortholog2880.D8LRC0
Preferred nameEIF5
KEGG koko:K03262,ko:K10683
KEGG Pathwayko03013,ko03440,ko04214,map03013,map03440,map04214
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1601@1,KOG2767@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko03019,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.932897-CDS-H-canaliculatus_F_contig12681:238..4161622928987.932897-CDS-H-canaliculatus_F_contig12681:238..416Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12681 239..416 -
1696845639.9455345-CDS-H-canaliculatus_F_contig12681:238..4161696845639.9455345-CDS-H-canaliculatus_F_contig12681:238..416Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12681 239..416 -
1622928987.9450958-CDS-H-canaliculatus_F_contig12681:990..10461622928987.9450958-CDS-H-canaliculatus_F_contig12681:990..1046Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12681 991..1046 -
1696845639.9591663-CDS-H-canaliculatus_F_contig12681:990..10461696845639.9591663-CDS-H-canaliculatus_F_contig12681:990..1046Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12681 991..1046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12681.2232.1prot_H-canaliculatus_F_contig12681.2232.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12681 239..1046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12681.2232.1

>prot_H-canaliculatus_F_contig12681.2232.1 ID=prot_H-canaliculatus_F_contig12681.2232.1|Name=mRNA_H-canaliculatus_F_contig12681.2232.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=78bp
MSGNINISGTEPIDDPEYRYKMPRVIGKVEGRGNGIKTVIFNVMDLSLAL
KRDPGEVCKFFGTELGAQARLPRTEPAV
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mRNA from alignment at H-canaliculatus_F_contig12681:239..1046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12681.2232.1 ID=mRNA_H-canaliculatus_F_contig12681.2232.1|Name=mRNA_H-canaliculatus_F_contig12681.2232.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=808bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12681:239..1046- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGGGAAATATCAACATTTCGGGCACGGAGCCCATCGATGACCCCGA
GTACAGGTGAGGATCCCGCGTGTAGTTTATCCATGCCGGATGCACGATGA
GGGGGCGCACACGCAGAGCATCCGCTGAGGCATGCGGGTAACAGTGTAGC
CGCTGGGTTGTAGACACCGGGGCAAACGGTGAGCTTTTTCAAGGAATTTC
ACCACGTCGTCCAGATGATGTCGGCGCGTATGTATGTGTCTGGAAGTCGT
CATGGAAGTCAGGCCCGTATCTCAGGCCAATTTGGTTTTTCAAGTTTACC
TCAAGCTCAATCAGACGCTCTACAACGCCAAATCTGCAGTCGCAGGAGTA
AAAGAAACACCCGTCCTCTCATGCGCTTCGGAAGGAGCACATTTGCGAAA
TCGAGAGGAACGCCGACATTACCGCGACCGCTGCCTTGTCTTTCGTGATC
CACCTGTTCAGCACGCTGTTTGTGCATGAACGCAAGTTGGAGGGATCTCG
AGTGAAATGTTTTCCCGCTACGATCAGTGCCCCTCTCTCATCACTTTATC
CTGGTTCAGCTTCATTCGCTCACGCCTTTCCCTCTTGCGGCCTCCCCACC
CGTCCACTCCCACCCCCTTGTCTGGCGCAGGTACAAGATGCCTCGCGTTA
TCGGAAAAGTGGAGGGAAGGGGCAACGGCATTAAGACGGTCATCTTCAAC
GTGATGGACCTTTCCCTGGCCCTCAAGCGCGACCCCGGAGAGGTCTGCAA
GTTCTTCGGCACTGAGCTCGGCGCCCAGGCAAGACTACCACGAACAGAGC
CAGCTGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12681:239..1046-

>mRNA_H-canaliculatus_F_contig12681.2232.1 ID=mRNA_H-canaliculatus_F_contig12681.2232.1|Name=mRNA_H-canaliculatus_F_contig12681.2232.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=468bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12681:239..1046- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGGGAAATATCAACATTTCGGGCACGGAGCCCATCGATGACCCCGA
GTACAGATGTCGGGAAATATCAACATTTCGGGCACGGAGCCCATCGATGA
CCCCGAGTACAGGTACAAGATGCCTCGCGTTATCGGAAAAGTGGAGGGAA
GGGGCAACGGCATTAAGACGGTCATCTTCAACGTGATGGACCTTTCCCTG
GCCCTCAAGCGCGACCCCGGAGAGGTCTGCAAGTTCTTCGGCACTGAGCT
CGGCGCCCAGGCAAGACTACCACGAACAGAGCCAGCTGTAGTACAAGATG
CCTCGCGTTATCGGAAAAGTGGAGGGAAGGGGCAACGGCATTAAGACGGT
CATCTTCAACGTGATGGACCTTTCCCTGGCCCTCAAGCGCGACCCCGGAG
AGGTCTGCAAGTTCTTCGGCACTGAGCTCGGCGCCCAGGCAAGACTACCA
CGAACAGAGCCAGCTGTA
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