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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1055 |
| Cds size | 921 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928649.3348165-CDS-H-canaliculatus_F_contig10209:593..904 | 1622928649.3348165-CDS-H-canaliculatus_F_contig10209:593..904 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10209 594..904 - |
| 1696845513.0306113-CDS-H-canaliculatus_F_contig10209:593..904 | 1696845513.0306113-CDS-H-canaliculatus_F_contig10209:593..904 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10209 594..904 - |
| 1622928649.3502946-CDS-H-canaliculatus_F_contig10209:1429..1480 | 1622928649.3502946-CDS-H-canaliculatus_F_contig10209:1429..1480 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10209 1430..1480 - |
| 1696845513.038864-CDS-H-canaliculatus_F_contig10209:1429..1480 | 1696845513.038864-CDS-H-canaliculatus_F_contig10209:1429..1480 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10209 1430..1480 - |
| 1622928649.3649766-CDS-H-canaliculatus_F_contig10209:1864..1963 | 1622928649.3649766-CDS-H-canaliculatus_F_contig10209:1864..1963 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10209 1865..1963 - |
| 1696845513.0540123-CDS-H-canaliculatus_F_contig10209:1864..1963 | 1696845513.0540123-CDS-H-canaliculatus_F_contig10209:1864..1963 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10209 1865..1963 - |
| 1622928649.379459-CDS-H-canaliculatus_F_contig10209:2307..2767 | 1622928649.379459-CDS-H-canaliculatus_F_contig10209:2307..2767 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10209 2308..2767 - |
| 1696845513.0649595-CDS-H-canaliculatus_F_contig10209:2307..2767 | 1696845513.0649595-CDS-H-canaliculatus_F_contig10209:2307..2767 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10209 2308..2767 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928649.3941665-UTR-H-canaliculatus_F_contig10209:2767..2900 | 1622928649.3941665-UTR-H-canaliculatus_F_contig10209:2767..2900 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10209 2768..2900 - |
| 1696845513.0750542-UTR-H-canaliculatus_F_contig10209:2767..2900 | 1696845513.0750542-UTR-H-canaliculatus_F_contig10209:2767..2900 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10209 2768..2900 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10209.223.1 >prot_H-canaliculatus_F_contig10209.223.1 ID=prot_H-canaliculatus_F_contig10209.223.1|Name=mRNA_H-canaliculatus_F_contig10209.223.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=307bp
MPSVADPIDSAAVGPQNPCSVLRTCHWPSLGTKSQHTCPTCGEVVHNLCH
QALLGIEDVPPLGFLCGGEKCRQLMTKEEKREALRASSASPEESADEDAN
SGPCSAGANCAAKIGDSSALTTECPHGQPRHFVCSRALCPDGCGSAWTRE
ETRAEQEKETLVLDDSESEDEGGVAGGSGPEKSHGKGANTTGPGRRLDMG
PKKSSTPTSGRSSPRHSGTPRTLPNPDVSAEAEVAQFRQIQVAVNDAVVE
HLTSAAFEARFFKSVGSSVTRSQASRAVNNAVAQHSKEFVEAAKEAGVAV
VTEHLCT back to topmRNA from alignment at H-canaliculatus_F_contig10209:594..2900- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10209.223.1 ID=mRNA_H-canaliculatus_F_contig10209.223.1|Name=mRNA_H-canaliculatus_F_contig10209.223.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2307bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10209:594..2900- (Hapterophycus canaliculatus Oshoro5f female)
ATGCACCGCAACTAAAAAAAAAAAAAATATTTGAAAAACAGCAGCTGCCT
CGGCATTCAAGTTCACTCGCGCACCAAAGGCGCCGAGAACCACCTGTAGG
GTTTCCTGCGCGACCTAGAGATCCTACAGCTACATGCCGAGTGTTGCAGA
CCCCATCGATTCTGCGGCGGTTGGGCCCCAGAACCCTTGTTCGGTGCTGC
GCACATGCCACTGGCCGTCACTGGGGACGAAGTCTCAACACACTTGCCCG
ACATGTGGCGAGGTCGTGCACAACCTGTGCCACCAGGCGTTGCTTGGTAT
CGAAGATGTGCCACCCTTAGGCTTCCTGTGCGGCGGCGAGAAGTGCCGTC
AACTCATGACCAAGGAGGAAAAGCGGGAGGCTCTGCGTGCCAGCTCTGCG
TCTCCGGAGGAGTCAGCAGACGAGGACGCGAACTCCGGACCTTGCAGCGC
CGGAGCAAACTGCGCAGCGAAAATCGGCGACTCATCGGCCCTTACGACAG
AGTGTCCCCATGGCCAACCGAGGCACTTCGTCTGCTCTCGAGCGCTCTGT
CCCGACGGATGCGGTAGTGCTTGGACCCGTGAAGAAACCCGGGGTAAGAT
TTATGGCAACGGCACAAGTGTAGGCTGGACGGCTGGACGGTATCATTCGT
TTGTTTTTATAGTATACGTATCACCAGGGTTTGAAAAAACCGAACAACGC
ATGTTCGGCTTGGTGTCCAGCGTTACCCACGTGTAGCAACCGCATGTCTA
CAGTCCCCAGTGGCGATACTTGTAGCGCGCTAATGTCCTCGAAGGGCTTG
GGTTAGAAGGGCTTGGCCTTTGGAAATAACTCCTTATCTGTGGGTTGGCG
CAAGACGCCGGCAATGGACGCGTTGGAGGTTGTATGGCCGTTGACGTCCT
TGCATTCCGTGTGTCGCGCGTCCGTCTTCCTACTTAGCCGAGCAAGAGAA
GGAGACACTGGTCCTTGACGACAGCGAGTCTGAAGACGAGGGCGGTGTCG
CTGGTGGGAGCGGACCGGAGAAGTCTCACGGCAAAGGTGATAGAGAGGCA
CCATCTTGTTGCCCTGGCAAAACATGCTAGGTATGAGGTTTTGTACCGGC
TTCAGCGCAAGGCGCCAGCCGGGGACGCTCTTCTCGAGTACCAGGTTCAT
TATGCTTTAGTCGAAGTAATCGATTTGGGTGGCGTGCAGCCGTTGTACTC
GTGTTCTAAACTGCTCGAGTAATGGGACAGACGATCTCGATTAGGGATCG
TCGTTGGGGTTAGCAATTGCGTCGTATGCGTTGATCTCCTGGTGTGGAGT
GAGCTGTGTCAGTATTGTTGGCAAAGCCGGACGAGTCCACGTCAACCTCG
GGATGATCTTGTTCGTTGCTTTCGAAATCATAACGGCTGTAGCCATCCCC
ACCCCCGCCTTGCCCTGCAGGCGCAAACACGACTGGACCTGGGAGGAGGC
TGGACATGGGGCCGAAGAAAAGTAAGTATCGCGTAGACGTAGGGTTGCTC
GGGGGGTGCGTTGATGCTGAAAACTCAGCGCTTGTTAGGTTCAGGGGAGG
GTGTCGAATTGGTCGTCGACTTCCACGGCGACGAAGCCAACTTCTGGGTG
GTTTGTTTCGCTAGCGCCCTCCGTGTTTGGAGCGAGCCTCTCGCCTTTTA
TTATTCTTGGGGCCTTCACGGCGCACCAACTAAAGCCGCCGCCGCTGCCG
AATGCGTATTTTTCGTTTTCGGCGGTGCTGTGAACCGGGCAGGATGCGCT
CCCCGTTGTGGTAGGGTGCTGCCTTTATTTACGTCATTTTCGCTCCACCC
AATTTGTGGAAGGTGGATAGGTCATCATTCGATAGTATGAGTAAGCTGTT
GGGGAAGTTTCGGCAGTTGGATGGACCCCGTTGTGCTACTTGAAGCGGTT
GGGTTAGGGTTAGTCAGATTTCGAGAGGCTTGCACCCAACATTTGTCATG
ACTCTCGAATTCTTCGTTGTCTGGCCCACACCTCGATTCTGTGTAGGCTC
GACGCCAACATCAGGAAGGTCTTCCCCGCGCCACAGCGGTACCCCTAGGA
CGCTGCCGAATCCCGATGTGTCTGCTGAGGCTGAGGTAGCGCAGTTCCGT
CAGATCCAAGTTGCGGTTAACGACGCCGTCGTGGAGCATTTAACCTCCGC
GGCGTTTGAGGCACGGTTCTTCAAGAGCGTTGGATCGAGTGTCACGAGGT
CGCAGGCCTCGAGGGCCGTCAACAACGCCGTCGCACAGCACTCTAAGGAG
TTCGTCGAGGCGGCGAAGGAAGCGGGCGTGGCCGTGGTGACGGAGCACTT
GTGCACA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10209:594..2900- >mRNA_H-canaliculatus_F_contig10209.223.1 ID=mRNA_H-canaliculatus_F_contig10209.223.1|Name=mRNA_H-canaliculatus_F_contig10209.223.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1842bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10209:594..2900- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGAGTGTTGCAGACCCCATCGATTCTGCGGCGGTTGGGCCCCAGAA
CCCTTGTTCGGTGCTGCGCACATGCCACTGGCCGTCACTGGGGACGAAGT
CTCAACACACTTGCCCGACATGTGGCGAGGTCGTGCACAACCTGTGCCAC
CAGGCGTTGCTTGGTATCGAAGATGTGCCACCCTTAGGCTTCCTGTGCGG
CGGCGAGAAGTGCCGTCAACTCATGACCAAGGAGGAAAAGCGGGAGGCTC
TGCGTGCCAGCTCTGCGTCTCCGGAGGAGTCAGCAGACGAGGACGCGAAC
TCCGGACCTTGCAGCGCCGGAGCAAACTGCGCAGCGAAAATCGGCGACTC
ATCGGCCCTTACGACAGAGTGTCCCCATGGCCAACCGAGGCACTTCGTCT
GCTCTCGAGCGCTCTGTCCCGACGGATGCGGTAGTGCTTGGACCCGTGAA
GAAACCCGGGATGCCGAGTGTTGCAGACCCCATCGATTCTGCGGCGGTTG
GGCCCCAGAACCCTTGTTCGGTGCTGCGCACATGCCACTGGCCGTCACTG
GGGACGAAGTCTCAACACACTTGCCCGACATGTGGCGAGGTCGTGCACAA
CCTGTGCCACCAGGCGTTGCTTGGTATCGAAGATGTGCCACCCTTAGGCT
TCCTGTGCGGCGGCGAGAAGTGCCGTCAACTCATGACCAAGGAGGAAAAG
CGGGAGGCTCTGCGTGCCAGCTCTGCGTCTCCGGAGGAGTCAGCAGACGA
GGACGCGAACTCCGGACCTTGCAGCGCCGGAGCAAACTGCGCAGCGAAAA
TCGGCGACTCATCGGCCCTTACGACAGAGTGTCCCCATGGCCAACCGAGG
CACTTCGTCTGCTCTCGAGCGCTCTGTCCCGACGGATGCGGTAGTGCTTG
GACCCGTGAAGAAACCCGGGCCGAGCAAGAGAAGGAGACACTGGTCCTTG
ACGACAGCGAGTCTGAAGACGAGGGCGGTGTCGCTGGTGGGAGCGGACCG
GAGAAGTCTCACGGCAAAGCCGAGCAAGAGAAGGAGACACTGGTCCTTGA
CGACAGCGAGTCTGAAGACGAGGGCGGTGTCGCTGGTGGGAGCGGACCGG
AGAAGTCTCACGGCAAAGGCGCAAACACGACTGGACCTGGGAGGAGGCTG
GACATGGGGCCGAAGAAAAGCGCAAACACGACTGGACCTGGGAGGAGGCT
GGACATGGGGCCGAAGAAAAGCTCGACGCCAACATCAGGAAGGTCTTCCC
CGCGCCACAGCGGTACCCCTAGGACGCTGCCGAATCCCGATGTGTCTGCT
GAGGCTGAGGTAGCGCAGTTCCGTCAGATCCAAGTTGCGGTTAACGACGC
CGTCGTGGAGCATTTAACCTCCGCGGCGTTTGAGGCACGGTTCTTCAAGA
GCGTTGGATCGAGTGTCACGAGGTCGCAGGCCTCGAGGGCCGTCAACAAC
GCCGTCGCACAGCACTCTAAGGAGTTCGTCGAGGCGGCGAAGGAAGCGGG
CGTGGCCGTGGTGACGGAGCACTTGTGCACAGCTCGACGCCAACATCAGG
AAGGTCTTCCCCGCGCCACAGCGGTACCCCTAGGACGCTGCCGAATCCCG
ATGTGTCTGCTGAGGCTGAGGTAGCGCAGTTCCGTCAGATCCAAGTTGCG
GTTAACGACGCCGTCGTGGAGCATTTAACCTCCGCGGCGTTTGAGGCACG
GTTCTTCAAGAGCGTTGGATCGAGTGTCACGAGGTCGCAGGCCTCGAGGG
CCGTCAACAACGCCGTCGCACAGCACTCTAAGGAGTTCGTCGAGGCGGCG
AAGGAAGCGGGCGTGGCCGTGGTGACGGAGCACTTGTGCACA back to top
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