mRNA_H-canaliculatus_F_contig12675.2230.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12675.2230.1
Unique NamemRNA_H-canaliculatus_F_contig12675.2230.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12675.2230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12675contigH-canaliculatus_F_contig12675:1901..2089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size182
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.7289045-CDS-H-canaliculatus_F_contig12675:1900..19931622928987.7289045-CDS-H-canaliculatus_F_contig12675:1900..1993Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12675 1901..1993 +
1696845639.8411572-CDS-H-canaliculatus_F_contig12675:1900..19931696845639.8411572-CDS-H-canaliculatus_F_contig12675:1900..1993Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12675 1901..1993 +
1622928987.7448244-CDS-H-canaliculatus_F_contig12675:2002..20891622928987.7448244-CDS-H-canaliculatus_F_contig12675:2002..2089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12675 2003..2089 +
1696845639.8522782-CDS-H-canaliculatus_F_contig12675:2002..20891696845639.8522782-CDS-H-canaliculatus_F_contig12675:2002..2089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12675 2003..2089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12675.2230.1prot_H-canaliculatus_F_contig12675.2230.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12675 1901..2089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12675.2230.1

>prot_H-canaliculatus_F_contig12675.2230.1 ID=prot_H-canaliculatus_F_contig12675.2230.1|Name=mRNA_H-canaliculatus_F_contig12675.2230.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=60bp
MPTQRWMVATSQPPTRAAAKRVAPQHFRDQDKEGGSAGGARHLRRFGIQR
VAAEGMRAGA
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mRNA from alignment at H-canaliculatus_F_contig12675:1901..2089+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12675.2230.1 ID=mRNA_H-canaliculatus_F_contig12675.2230.1|Name=mRNA_H-canaliculatus_F_contig12675.2230.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=189bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12675:1901..2089+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGACTCAGCGATGGATGGTGGCTACATCACAACCACCAACCAGAGC
AGCGGCCAAGCGCGTTGCTCCGCAGCATTTCAGAGACCAGGATGCTTGCG
AGAAGGAGGGCGGGAGCGCAGGAGGAGCTAGACACCTTCGACGGTTTGGA
ATCCAGAGGGTAGCAGCAGAAGGAATGAGAGCCGGGGCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12675:1901..2089+

>mRNA_H-canaliculatus_F_contig12675.2230.1 ID=mRNA_H-canaliculatus_F_contig12675.2230.1|Name=mRNA_H-canaliculatus_F_contig12675.2230.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=360bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12675:1901..2089+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGACTCAGCGATGGATGGTGGCTACATCACAACCACCAACCAGAGC
AGCGGCCAAGCGCGTTGCTCCGCAGCATTTCAGAGACCAGGATATGCCGA
CTCAGCGATGGATGGTGGCTACATCACAACCACCAACCAGAGCAGCGGCC
AAGCGCGTTGCTCCGCAGCATTTCAGAGACCAGGATAAGGAGGGCGGGAG
CGCAGGAGGAGCTAGACACCTTCGACGGTTTGGAATCCAGAGGGTAGCAG
CAGAAGGAATGAGAGCCGGGGCAAAGGAGGGCGGGAGCGCAGGAGGAGCT
AGACACCTTCGACGGTTTGGAATCCAGAGGGTAGCAGCAGAAGGAATGAG
AGCCGGGGCA
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