mRNA_H-canaliculatus_F_contig12670.2229.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12670.2229.1
Unique NamemRNA_H-canaliculatus_F_contig12670.2229.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12670.2229.1 vs. uniprot
Match: A0A6H5K8F1_9PHAE (VDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8F1_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.430e-51
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 1 
Query:    1 CFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPIEAQAKSFNPKMMEGQWYI 237
            CFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPIE+Q KSFNPK+MEGQWYI
Sbjct:   81 CFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPIESQVKSFNPKLMEGQWYI 159
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12670.2229.1 vs. uniprot
Match: A0A7S2SKA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA3_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.070e-36
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 CFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPIEAQAKSFNPKMMEGQWYI 237
            C AN+ C+QTCNGRPDE  CQIRCGD+FENE VG+FNACAVS+K CV QRQDDG++PVPP  A  +SFN K  EG+WYI
Sbjct:   58 CLANLACIQTCNGRPDESACQIRCGDIFENEVVGEFNACAVSQKRCVPQRQDDGTFPVPPESALVRSFNTKQFEGRWYI 136
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12670.2229.1 vs. uniprot
Match: F0YAR5_AURAN (VDE domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAR5_AURAN)

HSP 1 Score: 126 bits (317), Expect = 1.710e-34
Identity = 51/79 (64.56%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 CFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPIEAQAKSFNPKMMEGQWYI 237
            C AN++C+ TC GR DE  CQIRCGDLFEN+ VG+FNACAVS+K CV QR DDG+WPVPP E+  K+FN ++ +G+WYI
Sbjct:   19 CAANLVCINTCTGRADESECQIRCGDLFENDVVGEFNACAVSQKKCVPQRGDDGAWPVPPQESYVKAFNTQVFDGRWYI 97
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12670.2229.1 vs. uniprot
Match: A0A835ZCN5_9STRA (Violaxanthin de-epoxidase chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN5_9STRA)

HSP 1 Score: 120 bits (302), Expect = 7.680e-31
Identity = 51/79 (64.56%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:    1 CFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPIEAQAKSFNPKMMEGQWYI 237
            C AN+ C+QTC G+ DE  CQI+CGD FENE V KFNACAVS+K CV Q+QDD S+PVPP EA  KSF+  + +GQWYI
Sbjct:   73 CIANLACIQTCAGKADETACQIKCGDYFENETVAKFNACAVSRKRCVPQKQDDNSYPVPPQEALVKSFDTSIFQGQWYI 151
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12670.2229.1 vs. uniprot
Match: A0A0M0JUT6_9EUKA (Violaxanthin de-epoxidase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JUT6_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 5.010e-30
Identity = 50/79 (63.29%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:    1 CFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPIEAQAKSFNPKMMEGQWYI 237
            C AN++C+QTC GR DEG CQIRCGD F N+ VG F  CAV+ K CV QR DDGSWPVP  EA   SF+P M+ G WYI
Sbjct:   75 CAANLLCIQTCTGRADEGDCQIRCGDAFSNDVVGDFTKCAVTDKKCVPQRADDGSWPVPSKEALVASFSPDMLTGPWYI 153
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12670.2229.1 vs. uniprot
Match: A0A8J2WYQ1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYQ1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.940e-29
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 CFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPIEAQAKSFNPKMMEGQWYI 237
            C AN++C+ +C GR DE  CQIRCGDLFENE VG FNACAVS+K CV QRQDDG++P P  EA  K F+ ++  G+WYI
Sbjct:   84 CAANLVCINSCTGRKDESECQIRCGDLFENEVVGDFNACAVSQKKCVPQRQDDGAYPEPSPEAIVKKFDTRVFNGRWYI 162
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12670.2229.1 vs. uniprot
Match: K8Z7V3_NANGC (Violaxanthin de-epoxidase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7V3_NANGC)

HSP 1 Score: 114 bits (286), Expect = 3.640e-28
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 CFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPIEAQAKSFNPKMMEGQWYI 237
            C AN+ICL TCN + DE  CQI CGDLFENE VG+FNACA+SKK CV +++DDG++PVPP  A   SF+    +G+WYI
Sbjct:  179 CLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGTYPVPPDSALVSSFDMNTFKGKWYI 257
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12670.2229.1 vs. uniprot
Match: A0A1Z5JG75_FISSO (Violaxanthin de-epoxidase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JG75_FISSO)

HSP 1 Score: 112 bits (279), Expect = 2.210e-27
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    1 CFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPIEAQAKSFNPKMMEGQWYI 237
            C AN++C+ TCNG+ DE  CQI+CGD+FEN  VG+FN CAVS+ +CV Q+QD+G +P+PP E     FN K+  G+WYI
Sbjct:  127 CLANVVCINTCNGKDDEIGCQIKCGDIFENSVVGEFNNCAVSQMSCVPQKQDEGFYPIPPEENVVPKFNTKLFRGRWYI 205
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12670.2229.1 vs. uniprot
Match: A0A7S2XNS0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNS0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.270e-27
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    1 CFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPIEAQAKSFNPKMMEGQWYI 237
            C AN+IC+ TCNG+ DE  CQI+CGD+FEN+ VG+FN CAVS  +CV QRQDDGS+PVP        F+ K+  G+WYI
Sbjct:  145 CLANVICINTCNGKADEMGCQIKCGDIFENDVVGEFNKCAVSDMDCVPQRQDDGSYPVPAPSQLVSKFDTKIFNGRWYI 223
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12670.2229.1 vs. uniprot
Match: A0A6A6M2U3_HEVBR (VDE domain-containing protein n=3 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6M2U3_HEVBR)

HSP 1 Score: 110 bits (276), Expect = 2.410e-27
Identity = 49/79 (62.03%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:    1 CFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPIEAQAKSFNPKMMEGQWYI 237
            C ANI CLQTCN RPDE  CQI+CGDLFEN  V +FN CAVS+KNCV Q+ D G +PVP      KSFN     G+WYI
Sbjct:   62 CAANIACLQTCNNRPDETECQIKCGDLFENSVVDEFNGCAVSRKNCVPQKSDVGQFPVPDPAVLVKSFNMADFNGKWYI 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12670.2229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8F1_9PHAE1.430e-5196.20VDE domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2SKA3_9STRA3.070e-3670.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YAR5_AURAN1.710e-3464.56VDE domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A835ZCN5_9STRA7.680e-3164.56Violaxanthin de-epoxidase chloroplast n=1 Tax=Trib... [more]
A0A0M0JUT6_9EUKA5.010e-3063.29Violaxanthin de-epoxidase n=1 Tax=Chrysochromulina... [more]
A0A8J2WYQ1_9STRA1.940e-2962.03Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
K8Z7V3_NANGC3.640e-2860.76Violaxanthin de-epoxidase n=3 Tax=Monodopsidaceae ... [more]
A0A1Z5JG75_FISSO2.210e-2755.70Violaxanthin de-epoxidase n=2 Tax=Fistulifera sola... [more]
A0A7S2XNS0_9STRA2.270e-2758.23Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A6A6M2U3_HEVBR2.410e-2762.03VDE domain-containing protein n=3 Tax=Hevea brasil... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12670contigH-canaliculatus_F_contig12670:1278..1995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue3.1e-42
Seed eggNOG ortholog2880.D7FY70
Preferred nameVDE
KEGG rclassRC01624,RC03037
KEGG koko:K09839
KEGG ReactionR07178,R07179,R10055
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006720,GO:0006721,GO:0006725,GO:0006778,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009507,GO:0009534,GO:0009536,GO:0009579,GO:0009628,GO:0009987,GO:0010028,GO:0015994,GO:0016108,GO:0016116,GO:0016122,GO:0016491,GO:0019752,GO:0019904,GO:0031976,GO:0031977,GO:0031984,GO:0032787,GO:0033013,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046422,GO:0046483,GO:0050896,GO:0051186,GO:0055114,GO:0071704,GO:1901360,GO:1901564
EggNOG free text desc.violaxanthin de-epoxidase activity
EggNOG OGs28K1H@1,2QSFY@2759
EC1.23.5.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.6573775-CDS-H-canaliculatus_F_contig12670:1277..13611622928987.6573775-CDS-H-canaliculatus_F_contig12670:1277..1361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12670 1278..1361 -
1696845639.8177135-CDS-H-canaliculatus_F_contig12670:1277..13611696845639.8177135-CDS-H-canaliculatus_F_contig12670:1277..1361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12670 1278..1361 -
1622928987.679594-CDS-H-canaliculatus_F_contig12670:1842..19951622928987.679594-CDS-H-canaliculatus_F_contig12670:1842..1995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12670 1843..1995 -
1696845639.8295813-CDS-H-canaliculatus_F_contig12670:1842..19951696845639.8295813-CDS-H-canaliculatus_F_contig12670:1842..1995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12670 1843..1995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12670.2229.1prot_H-canaliculatus_F_contig12670.2229.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12670 1278..1995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12670.2229.1

>prot_H-canaliculatus_F_contig12670.2229.1 ID=prot_H-canaliculatus_F_contig12670.2229.1|Name=mRNA_H-canaliculatus_F_contig12670.2229.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=79bp
CFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQR
QDDGSWPVPPIEAQAKSFNPKMMEGQWYI
back to top

mRNA from alignment at H-canaliculatus_F_contig12670:1278..1995-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12670.2229.1 ID=mRNA_H-canaliculatus_F_contig12670.2229.1|Name=mRNA_H-canaliculatus_F_contig12670.2229.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=718bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12670:1278..1995- (Hapterophycus canaliculatus Oshoro5f female)
TGTTTCGCGAACATCATCTGCCTGCAGACGTGCAACGGCCGGCCGGACGA
GGGCTACTGCCAGATCCGGTGCGGCGACCTCTTCGAAAACGAGGCGGTGG
GGAAGTTCAACGCTTGCGCCGTGTCGAAGAAGAACTGCGTCAAGCAGCGA
CAGGTCCGCGGTATTGTCGCCGTCGTCGTCCTCGCCGTCGTCGTCCTCGC
CGTCGTCGCTATTTGTGTTTTTTTTAGTACCTCGTACGAGAACGAGTCCA
CACAACACCAAAGGAAATACCCTCCTTGAGGACGAAGTAAAGCGATTCAG
AGAGGTCTTGCTGACTTCCTTGCAGTGGGGGTTCTTCGTTATGGTGGATG
TTTTGTGCGTGTCGTATGAGAAGTACGTTTGCGTTATTTCGTGGCATTTT
GATTTTTTTCGGGAGTGTTGGAGGTTGTTGAGTTAGTTTCGCTTTTGCTG
GTGGCGGTGTCGGGCGCGGGCTATGCTTTTCCCTTCCTGTTGCGCGTGCG
CTTCCTTCCTCCTTCCCGGATACGCTGCGTCGTCGTGAGAAACGTATATT
TTCCCTCGTCCACCCGTCGCCCGAACCGACCCCGCTGGTCTCTTGGCCTA
ACCATCCCCACGCCCGTCTGCGTCCCTTGCGCAGGACGATGGCTCGTGGC
CCGTACCCCCCATCGAGGCCCAGGCCAAGTCCTTCAACCCCAAGATGATG
GAGGGGCAGTGGTACATA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12670:1278..1995-

>mRNA_H-canaliculatus_F_contig12670.2229.1 ID=mRNA_H-canaliculatus_F_contig12670.2229.1|Name=mRNA_H-canaliculatus_F_contig12670.2229.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=474bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12670:1278..1995- (Hapterophycus canaliculatus Oshoro5f female)
TGTTTCGCGAACATCATCTGCCTGCAGACGTGCAACGGCCGGCCGGACGA
GGGCTACTGCCAGATCCGGTGCGGCGACCTCTTCGAAAACGAGGCGGTGG
GGAAGTTCAACGCTTGCGCCGTGTCGAAGAAGAACTGCGTCAAGCAGCGA
CAGTGTTTCGCGAACATCATCTGCCTGCAGACGTGCAACGGCCGGCCGGA
CGAGGGCTACTGCCAGATCCGGTGCGGCGACCTCTTCGAAAACGAGGCGG
TGGGGAAGTTCAACGCTTGCGCCGTGTCGAAGAAGAACTGCGTCAAGCAG
CGACAGGACGATGGCTCGTGGCCCGTACCCCCCATCGAGGCCCAGGCCAA
GTCCTTCAACCCCAAGATGATGGAGGGGCAGTGGTACATAGACGATGGCT
CGTGGCCCGTACCCCCCATCGAGGCCCAGGCCAAGTCCTTCAACCCCAAG
ATGATGGAGGGGCAGTGGTACATA
back to top