mRNA_H-canaliculatus_F_contig12665.2226.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12665.2226.1
Unique NamemRNA_H-canaliculatus_F_contig12665.2226.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12665.2226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12665contigH-canaliculatus_F_contig12665:1988..2701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size294
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12665.2226.1prot_H-canaliculatus_F_contig12665.2226.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12665 1988..2680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.11483-CDS-H-canaliculatus_F_contig12665:1987..22271622928987.11483-CDS-H-canaliculatus_F_contig12665:1987..2227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12665 1988..2227 +
1696845639.511909-CDS-H-canaliculatus_F_contig12665:1987..22271696845639.511909-CDS-H-canaliculatus_F_contig12665:1987..2227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12665 1988..2227 +
1622928987.134981-CDS-H-canaliculatus_F_contig12665:2626..26801622928987.134981-CDS-H-canaliculatus_F_contig12665:2626..2680Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12665 2627..2680 +
1696845639.521298-CDS-H-canaliculatus_F_contig12665:2626..26801696845639.521298-CDS-H-canaliculatus_F_contig12665:2626..2680Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12665 2627..2680 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.153518-UTR-H-canaliculatus_F_contig12665:2680..27011622928987.153518-UTR-H-canaliculatus_F_contig12665:2680..2701Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12665 2681..2701 +
1696845639.531403-UTR-H-canaliculatus_F_contig12665:2680..27011696845639.531403-UTR-H-canaliculatus_F_contig12665:2680..2701Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12665 2681..2701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12665.2226.1

>prot_H-canaliculatus_F_contig12665.2226.1 ID=prot_H-canaliculatus_F_contig12665.2226.1|Name=mRNA_H-canaliculatus_F_contig12665.2226.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
CRCYQRRLSRVASEDLPDAAAAAAQGGRNDAAISSSASSVDASIRTAPTG
TDVSPDGNEGLDGREDSAAGGASADDTDEAPRKGMVRVNNGLLGWRK*
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mRNA from alignment at H-canaliculatus_F_contig12665:1988..2701+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12665.2226.1 ID=mRNA_H-canaliculatus_F_contig12665.2226.1|Name=mRNA_H-canaliculatus_F_contig12665.2226.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=714bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12665:1988..2701+ (Hapterophycus canaliculatus Oshoro5f female)
TGCCGCTGCTATCAACGACGACTGAGTAGAGTTGCGTCCGAAGATCTTCC
TGATGCTGCCGCTGCTGCTGCACAAGGCGGAAGGAACGACGCGGCCATCT
CGTCTTCAGCGTCTTCCGTCGATGCGTCCATCAGGACAGCACCTACCGGC
ACCGACGTTAGCCCCGACGGGAACGAGGGTCTCGATGGCCGCGAGGACTC
GGCCGCTGGCGGTGCTTCCGCCGACGACACCGACGAAGCGGTGAGGAATC
CTACATACCGGCATGTTTCTCTCTCCACGCCCCTTAAGCCAGTCGGCTGA
CACCGCTGCCGACCCATTCCCGCGCCATGCGTGCGTGTTGTTGGGCATGC
AGACACGGAACGCGTCGGCGGTGTCGCTCATTTCGCAGGACAGAAGTGGA
AGTTGCGGAGAGCGCCACGAGGTAGAAGCCGAGGATCTGCAGTAGAGCGG
ACAGAGCTTACTCGCAGACAGATCGAAACGCGCCGAGCCGTGCGCTGGAA
CCTGGAATATACATATTTACGCAGAGCCTTGTTCGGGAAGGAGTGACCGC
CCCACCACCGACGCCGTCGTCGAACCCTTTCCCTGCGTCATCTTCGTGCG
TGTGCCTGTCTGTGTTGTATGTCTTTCTTTTTGCTACAGCCCCGCAAGGG
GATGGTGCGCGTCAATAACGGCCTCCTAGGATGGAGGAAGTGAGAGCCCT
CGCTTGTGGACGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12665:1988..2701+

>mRNA_H-canaliculatus_F_contig12665.2226.1 ID=mRNA_H-canaliculatus_F_contig12665.2226.1|Name=mRNA_H-canaliculatus_F_contig12665.2226.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12665:1988..2701+ (Hapterophycus canaliculatus Oshoro5f female)
TGCCGCTGCTATCAACGACGACTGAGTAGAGTTGCGTCCGAAGATCTTCC
TGATGCTGCCGCTGCTGCTGCACAAGGCGGAAGGAACGACGCGGCCATCT
CGTCTTCAGCGTCTTCCGTCGATGCGTCCATCAGGACAGCACCTACCGGC
ACCGACGTTAGCCCCGACGGGAACGAGGGTCTCGATGGCCGCGAGGACTC
GGCCGCTGGCGGTGCTTCCGCCGACGACACCGACGAAGCGTGCCGCTGCT
ATCAACGACGACTGAGTAGAGTTGCGTCCGAAGATCTTCCTGATGCTGCC
GCTGCTGCTGCACAAGGCGGAAGGAACGACGCGGCCATCTCGTCTTCAGC
GTCTTCCGTCGATGCGTCCATCAGGACAGCACCTACCGGCACCGACGTTA
GCCCCGACGGGAACGAGGGTCTCGATGGCCGCGAGGACTCGGCCGCTGGC
GGTGCTTCCGCCGACGACACCGACGAAGCGCCCCGCAAGGGGATGGTGCG
CGTCAATAACGGCCTCCTAGGATGGAGGAAGTGACCCCGCAAGGGGATGG
TGCGCGTCAATAACGGCCTCCTAGGATGGAGGAAGTGA
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