mRNA_H-canaliculatus_F_contig12658.2222.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12658.2222.1
Unique NamemRNA_H-canaliculatus_F_contig12658.2222.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12658.2222.1 vs. uniprot
Match: A0A5C7YKY1_FLASP (T9SS type B sorting domain-containing protein (Fragment) n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A5C7YKY1_FLASP)

HSP 1 Score: 59.7 bits (143), Expect = 4.220e-8
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   22 DCDGDGVTYAQELIDGTDPTNACSLIVANQDAIPSAAWL 138
            DCDGDGVT  QE +DGT+P+N C L+ ANQD  P+  WL
Sbjct:  303 DCDGDGVTNGQEALDGTNPSNPCDLVAANQDTTPTLTWL 341
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BLAST of mRNA_H-canaliculatus_F_contig12658.2222.1 vs. uniprot
Match: A0A1I3JZ44_9FLAO (CshA-type fibril repeat-containing protein (Fragment) n=1 Tax=Olleya namhaensis TaxID=1144750 RepID=A0A1I3JZ44_9FLAO)

HSP 1 Score: 57.8 bits (138), Expect = 2.170e-7
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   16 TTDCDGDGVTYAQELIDGTDPTNACSLIVANQDAIPSAA 132
            T DCDGDGVT AQE++DGTDPT++C L VA+Q   P AA
Sbjct: 2268 TADCDGDGVTNAQEVLDGTDPTDSCELEVASQTLAPDAA 2306
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BLAST of mRNA_H-canaliculatus_F_contig12658.2222.1 vs. uniprot
Match: A0A7H8PNF6_9FLAO (Uncharacterized protein n=1 Tax=Aquimarina sp. TRL1 TaxID=2736252 RepID=A0A7H8PNF6_9FLAO)

HSP 1 Score: 55.8 bits (133), Expect = 1.030e-6
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:   22 DCDGDGVTYAQELIDGTDPTNACSLIVANQDAIP 123
            DCD DGVT  QE+ DGTDPT+ CSL+ ANQDA P
Sbjct: 1783 DCDEDGVTNGQEITDGTDPTDGCSLVAANQDATP 1816
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BLAST of mRNA_H-canaliculatus_F_contig12658.2222.1 vs. uniprot
Match: A0A7Y3HYV1_9FLAO (T9SS type B sorting domain-containing protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7Y3HYV1_9FLAO)

HSP 1 Score: 55.1 bits (131), Expect = 1.700e-6
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   22 DCDGDGVTYAQELIDGTDPTNACSLIVANQDAIP 123
            DCDGDGVT  QE+IDGTDPTN C  ++ANQ   P
Sbjct:    9 DCDGDGVTNGQEVIDGTDPTNPCDFVLANQTVTP 42
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BLAST of mRNA_H-canaliculatus_F_contig12658.2222.1 vs. uniprot
Match: A0A3L9YB72_9FLAO (Gliding motility-associated-like protein (Fragment) n=1 Tax=Ulvibacter antarcticus TaxID=442714 RepID=A0A3L9YB72_9FLAO)

HSP 1 Score: 54.7 bits (130), Expect = 2.530e-6
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:   16 TTDCDGDGVTYAQELIDGTDPTNACSLIVANQDAIPSAAWLA 141
            T DCDGDGVT  QE+IDGTDP + C  +V +Q    SA W A
Sbjct:  468 TNDCDGDGVTNEQEIIDGTDPNDPCEYLVTSQTGTTSATWNA 509
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BLAST of mRNA_H-canaliculatus_F_contig12658.2222.1 vs. uniprot
Match: A0A437PUV5_9BACT (Tandem-95 repeat protein (Fragment) n=2 Tax=Sandaracinomonas limnophila TaxID=1862386 RepID=A0A437PUV5_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 4.800e-6
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:   22 DCDGDGVTYAQELIDGTDPTNACSLIVANQDAIPSAAWLAA 144
            DCDGDGVT  QE++D TDP + CSL+  +Q   P   WL A
Sbjct:  880 DCDGDGVTNGQEILDHTDPADPCSLVAGSQTVAPKGIWLTA 920
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BLAST of mRNA_H-canaliculatus_F_contig12658.2222.1 vs. uniprot
Match: A0A4P7WV04_9FLAO (DUF11 domain-containing protein n=1 Tax=Psychroserpens sp. NJDZ02 TaxID=2570561 RepID=A0A4P7WV04_9FLAO)

HSP 1 Score: 53.1 bits (126), Expect = 9.140e-6
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   22 DCDGDGVTYAQELIDGTDPTNACSLIVANQDAIPSAAW 135
            D DGDGVT  QE +DGTDP + CSLIVANQ   P AA+
Sbjct: 4198 DSDGDGVTDGQEALDGTDPNDNCSLIVANQTETPDAAY 4235
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12658.2222.1 vs. uniprot
Match: A0A267T4G1_9BACT (Uncharacterized protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A267T4G1_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 1.680e-5
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   13 ATTDCDGDGVTYAQELIDGTDPTNACSLIVANQDAIPSAAW 135
            ++ D DGDGVT  QE +DGTDP +ACS ++A+Q   PS++W
Sbjct:  650 SSDDADGDGVTDGQEGLDGTDPMDACSFVLASQTRTPSSSW 690
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BLAST of mRNA_H-canaliculatus_F_contig12658.2222.1 vs. uniprot
Match: A0A5J4ISH7_9FLAO (Uncharacterized protein n=1 Tax=Patiriisocius marinus TaxID=1397112 RepID=A0A5J4ISH7_9FLAO)

HSP 1 Score: 52.4 bits (124), Expect = 1.690e-5
Identity = 23/38 (60.53%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:   16 TTDCDGDGVTYAQELIDGTDPTNACSLIVANQDAIPSA 129
            T+DCDGDGVT  QE+IDGTDPT  C  +  N    PSA
Sbjct: 2276 TSDCDGDGVTNEQEIIDGTDPTEVCDFVDTNMTLPPSA 2313
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12658.2222.1 vs. uniprot
Match: A0A495SI92_9FLAO (Gliding motility-associated-like protein n=1 Tax=Flavobacterium sp. 123 TaxID=2135627 RepID=A0A495SI92_9FLAO)

HSP 1 Score: 51.6 bits (122), Expect = 3.160e-5
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:   22 DCDGDGVTYAQELIDGTDPTNACSLIVANQDAIPSAAW 135
            DCDGDGVT  QELID TDP++ACSL  A+Q      AW
Sbjct: 3553 DCDGDGVTNGQELIDATDPSDACSLKFASQTVETLTAW 3590
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12658.2222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A5C7YKY1_FLASP4.220e-861.54T9SS type B sorting domain-containing protein (Fra... [more]
A0A1I3JZ44_9FLAO2.170e-766.67CshA-type fibril repeat-containing protein (Fragme... [more]
A0A7H8PNF6_9FLAO1.030e-670.59Uncharacterized protein n=1 Tax=Aquimarina sp. TRL... [more]
A0A7Y3HYV1_9FLAO1.700e-667.65T9SS type B sorting domain-containing protein n=1 ... [more]
A0A3L9YB72_9FLAO2.530e-657.14Gliding motility-associated-like protein (Fragment... [more]
A0A437PUV5_9BACT4.800e-653.66Tandem-95 repeat protein (Fragment) n=2 Tax=Sandar... [more]
A0A4P7WV04_9FLAO9.140e-665.79DUF11 domain-containing protein n=1 Tax=Psychroser... [more]
A0A267T4G1_9BACT1.680e-553.66Uncharacterized protein n=2 Tax=Bacteroidetes TaxI... [more]
A0A5J4ISH7_9FLAO1.690e-560.53Uncharacterized protein n=1 Tax=Patiriisocius mari... [more]
A0A495SI92_9FLAO3.160e-563.16Gliding motility-associated-like protein n=1 Tax=F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12658contigH-canaliculatus_F_contig12658:44..658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12658.2222.1prot_H-canaliculatus_F_contig12658.2222.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12658 44..655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928986.4264367-CDS-H-canaliculatus_F_contig12658:43..1411622928986.4264367-CDS-H-canaliculatus_F_contig12658:43..141Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12658 44..141 -
1696845639.1309712-CDS-H-canaliculatus_F_contig12658:43..1411696845639.1309712-CDS-H-canaliculatus_F_contig12658:43..141Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12658 44..141 -
1622928986.4489515-CDS-H-canaliculatus_F_contig12658:426..6551622928986.4489515-CDS-H-canaliculatus_F_contig12658:426..655Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12658 427..655 -
1696845639.141539-CDS-H-canaliculatus_F_contig12658:426..6551696845639.141539-CDS-H-canaliculatus_F_contig12658:426..655Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12658 427..655 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928986.464779-UTR-H-canaliculatus_F_contig12658:655..6581622928986.464779-UTR-H-canaliculatus_F_contig12658:655..658Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12658 656..658 -
1696845639.1510332-UTR-H-canaliculatus_F_contig12658:655..6581696845639.1510332-UTR-H-canaliculatus_F_contig12658:655..658Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12658 656..658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12658.2222.1

>prot_H-canaliculatus_F_contig12658.2222.1 ID=prot_H-canaliculatus_F_contig12658.2222.1|Name=mRNA_H-canaliculatus_F_contig12658.2222.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
MPQATTDCDGDGVTYAQELIDGTDPTNACSLIVANQDAIPSAAWLAADCD
GDGVTNGEEVTNGTDPLNNPGDTDGDGYDASNAIWAAADCDGDGVTNGEE
ATNGTDPYE
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mRNA from alignment at H-canaliculatus_F_contig12658:44..658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12658.2222.1 ID=mRNA_H-canaliculatus_F_contig12658.2222.1|Name=mRNA_H-canaliculatus_F_contig12658.2222.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=615bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12658:44..658- (Hapterophycus canaliculatus Oshoro5f female)
TGGATGCCACAAGCGACCACCGATTGTGATGGTGATGGAGTTACGTACGC
ACAAGAATTGATTGACGGTACAGACCCAACAAATGCCTGTAGTTTAATAG
TGGCAAACCAAGATGCAATACCAAGTGCTGCATGGTTAGCCGCAGACTGT
GATGGTGATGGGGTAACCAATGGCGAGGAAGTAACTAACGGTACTGACCC
ATTGAACAATCCTGGTGATACTGATGGTGATGGTATTGATGATGATGTAG
AGGTTAGTAATGGTACCGATGAAAACAACCCATGTGATCCAGCACAAGCT
GCGGGTTATACAGGTTATGACGCATCGAATGCTATTTGGGCTGCTGCTGA
TTGTGATGGTGACGGGGTAACCAATGGTGAGGAAGCAACTAATGGAACAG
ATCCATATGAAACTTCAGGTGATACTGATGGTGATGGCATTGACGATGAC
AACGAAATCAACAATGGTACCGATGAAAATAATCCATGTGATCCAGCACA
AGCTGCAGGGTATACAGGTTATGACGCATCCAATGCGATATGGGCTGCTG
CTGATTGTGATGGCGATGGGGTAACCAATGGTGAGGAAGCAACTAATGGA
ACAGATCCATATGAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12658:44..658-

>mRNA_H-canaliculatus_F_contig12658.2222.1 ID=mRNA_H-canaliculatus_F_contig12658.2222.1|Name=mRNA_H-canaliculatus_F_contig12658.2222.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12658:44..658- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCACAAGCGACCACCGATTGTGATGGTGATGGAGTTACGTACGCACA
AGAATTGATTGACGGTACAGACCCAACAAATGCCTGTAGTTTAATAGTGG
CAAACCAAGATGCAATACCAAGTGCTGCATGGTTAGCCGCAGACTGTGAT
GGTGATGGGGTAACCAATGGCGAGGAAGTAACTAACGGTACTGACCCATT
GAACAATCCTGGTGATACTGATGGTGATGATGCCACAAGCGACCACCGAT
TGTGATGGTGATGGAGTTACGTACGCACAAGAATTGATTGACGGTACAGA
CCCAACAAATGCCTGTAGTTTAATAGTGGCAAACCAAGATGCAATACCAA
GTGCTGCATGGTTAGCCGCAGACTGTGATGGTGATGGGGTAACCAATGGC
GAGGAAGTAACTAACGGTACTGACCCATTGAACAATCCTGGTGATACTGA
TGGTGATGGTTATGACGCATCCAATGCGATATGGGCTGCTGCTGATTGTG
ATGGCGATGGGGTAACCAATGGTGAGGAAGCAACTAATGGAACAGATCCA
TATGAAGTTATGACGCATCCAATGCGATATGGGCTGCTGCTGATTGTGAT
GGCGATGGGGTAACCAATGGTGAGGAAGCAACTAATGGAACAGATCCATA
TGAA
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