mRNA_H-canaliculatus_F_contig12654.2220.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12654.2220.1
Unique NamemRNA_H-canaliculatus_F_contig12654.2220.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12654.2220.1 vs. uniprot
Match: D8LHK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHK8_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.830e-26
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 HQLRKKTQLDGMVDAIVLALKFLPLDAAPIALLVTDGIADYPSPMEYDGLSMRLCRHDV 177
             Q R+KTQLDGM DAIVLALKFLPLDAAPIAL+VTDG+ DYPSP EYDGLSMRLCRHDV
Sbjct:  479 QQSRQKTQLDGMADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDV 537
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BLAST of mRNA_H-canaliculatus_F_contig12654.2220.1 vs. uniprot
Match: A0A6H5KTQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ7_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 7.150e-26
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 HQLRKKTQLDGMVDAIVLALKFLPLDAAPIALLVTDGIADYPSPMEYDGLSMRLCRHDV 177
             Q R+KTQLDGM DAIVLALKFLPLDAAPIAL+VTDG+ DYPSP EYDGLSMRLCRHDV
Sbjct:  471 QQGRQKTQLDGMADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDV 529
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BLAST of mRNA_H-canaliculatus_F_contig12654.2220.1 vs. uniprot
Match: A0A836C7M7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7M7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 7.670e-11
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   19 TQLDGMVDAIVLALKFLPLDAAPIALLVTDGIADYPSPMEYDGLSMRLCRHDV 177
            T ++ ++ A   ALKFLP DAAP+A+++TDG+ + PS   YD L M+LCRHD 
Sbjct:  293 THVEDVLQAAAFALKFLPFDAAPLAVVLTDGVGERPSSCAYDSLLMQLCRHDT 345
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12654.2220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHK8_ECTSI3.830e-2686.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTQ7_9PHAE7.150e-2686.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C7M7_9STRA7.670e-1150.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12654contigH-canaliculatus_F_contig12654:155..331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928986.2571263-CDS-H-canaliculatus_F_contig12654:154..3311622928986.2571263-CDS-H-canaliculatus_F_contig12654:154..331Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12654 155..331 -
1696845639.0655673-CDS-H-canaliculatus_F_contig12654:154..3311696845639.0655673-CDS-H-canaliculatus_F_contig12654:154..331Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12654 155..331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12654.2220.1prot_H-canaliculatus_F_contig12654.2220.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12654 155..331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12654.2220.1

>prot_H-canaliculatus_F_contig12654.2220.1 ID=prot_H-canaliculatus_F_contig12654.2220.1|Name=mRNA_H-canaliculatus_F_contig12654.2220.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=59bp
HQLRKKTQLDGMVDAIVLALKFLPLDAAPIALLVTDGIADYPSPMEYDGL
SMRLCRHDV
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mRNA from alignment at H-canaliculatus_F_contig12654:155..331-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12654.2220.1 ID=mRNA_H-canaliculatus_F_contig12654.2220.1|Name=mRNA_H-canaliculatus_F_contig12654.2220.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=177bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12654:155..331- (Hapterophycus canaliculatus Oshoro5f female)
CATCAGCTCCGCAAGAAGACGCAGCTGGACGGGATGGTGGACGCGATCGT
CCTCGCGCTCAAGTTCTTACCGCTGGACGCGGCGCCGATCGCCCTCTTGG
TGACGGACGGGATCGCCGACTATCCGTCGCCCATGGAGTACGACGGCCTG
TCCATGCGGCTGTGCCGGCACGACGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12654:155..331-

>mRNA_H-canaliculatus_F_contig12654.2220.1 ID=mRNA_H-canaliculatus_F_contig12654.2220.1|Name=mRNA_H-canaliculatus_F_contig12654.2220.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=354bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12654:155..331- (Hapterophycus canaliculatus Oshoro5f female)
CATCAGCTCCGCAAGAAGACGCAGCTGGACGGGATGGTGGACGCGATCGT
CCTCGCGCTCAAGTTCTTACCGCTGGACGCGGCGCCGATCGCCCTCTTGG
TGACGGACGGGATCGCCGACTATCCGTCGCCCATGGAGTACGACGGCCTG
TCCATGCGGCTGTGCCGGCACGACGTGCATCAGCTCCGCAAGAAGACGCA
GCTGGACGGGATGGTGGACGCGATCGTCCTCGCGCTCAAGTTCTTACCGC
TGGACGCGGCGCCGATCGCCCTCTTGGTGACGGACGGGATCGCCGACTAT
CCGTCGCCCATGGAGTACGACGGCCTGTCCATGCGGCTGTGCCGGCACGA
CGTG
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