mRNA_H-canaliculatus_F_contig1265.2216.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1265.2216.1
Unique NamemRNA_H-canaliculatus_F_contig1265.2216.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1265.2216.1 vs. uniprot
Match: D7FZ62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ62_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.220e-28
Identity = 98/214 (45.79%), Postives = 121/214 (56.54%), Query Frame = 1 
Query:  148 SSPETDVEDWSEDTLSSSPQHAGYLPLDHYD--GLEDDQQXXXXXXXXXXXXXXXQADDTSIEETLAGGDASSRQPDIASAILRAMEADYRACVESEERLTSNGPIAPSSTSVHTTAEIPTQEHGQ-VEDNGTLSRERDDSSPDREERGSESMGGVPPP---------RPISPLGQDQAERVMRAMQGFALAAPALSPVRFEVDWGSPDALANL 753
            S+P TD E WS++T   SP+H GY  LD Y   G E D+ XXXXXXX                  +   D +S QPD+AS +LRAME DYRACVESE  + SNGPIA ++T+   T + P++E  Q +E NGTL+  +                              RP+SPLGQD+AERV+RAMQGF LAAP+L P  FE DWG P ALANL
Sbjct:    7 STPTTDGEHWSDET-EGSPEHTGYAALDQYQPLGEEGDEXXXXXXXXGTEEQRTESVGGEGWPAGVVDVD-TSLQPDMASVLLRAMEEDYRACVESEGHVVSNGPIA-AATAATETRKPPSEEPAQQLEGNGTLTPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXATMRPVSPLGQDRAERVIRAMQGFTLAAPSLPPAPFEADWGHPSALANL 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1265.2216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ62_ECTSI1.220e-2845.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1265contigH-canaliculatus_F_contig1265:7377..11969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1582
Cds size759
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928985.1763878-UTR-H-canaliculatus_F_contig1265:7376..75051622928985.1763878-UTR-H-canaliculatus_F_contig1265:7376..7505Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1265 7377..7505 +
1696845638.78491-UTR-H-canaliculatus_F_contig1265:7376..75051696845638.78491-UTR-H-canaliculatus_F_contig1265:7376..7505Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1265 7377..7505 +
1622928985.716984-UTR-H-canaliculatus_F_contig1265:11275..119691622928985.716984-UTR-H-canaliculatus_F_contig1265:11275..11969Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1265 11276..11969 +
1696845638.8484654-UTR-H-canaliculatus_F_contig1265:11275..119691696845638.8484654-UTR-H-canaliculatus_F_contig1265:11275..11969Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1265 11276..11969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928985.645881-CDS-H-canaliculatus_F_contig1265:7505..77481622928985.645881-CDS-H-canaliculatus_F_contig1265:7505..7748Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 7506..7748 +
1696845638.796072-CDS-H-canaliculatus_F_contig1265:7505..77481696845638.796072-CDS-H-canaliculatus_F_contig1265:7505..7748Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 7506..7748 +
1622928985.659845-CDS-H-canaliculatus_F_contig1265:9115..91751622928985.659845-CDS-H-canaliculatus_F_contig1265:9115..9175Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 9116..9175 +
1696845638.804977-CDS-H-canaliculatus_F_contig1265:9115..91751696845638.804977-CDS-H-canaliculatus_F_contig1265:9115..9175Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 9116..9175 +
1622928985.6787655-CDS-H-canaliculatus_F_contig1265:9445..96531622928985.6787655-CDS-H-canaliculatus_F_contig1265:9445..9653Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 9446..9653 +
1696845638.8151066-CDS-H-canaliculatus_F_contig1265:9445..96531696845638.8151066-CDS-H-canaliculatus_F_contig1265:9445..9653Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 9446..9653 +
1622928985.6913433-CDS-H-canaliculatus_F_contig1265:10481..105441622928985.6913433-CDS-H-canaliculatus_F_contig1265:10481..10544Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 10482..10544 +
1696845638.8285697-CDS-H-canaliculatus_F_contig1265:10481..105441696845638.8285697-CDS-H-canaliculatus_F_contig1265:10481..10544Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 10482..10544 +
1622928985.7047746-CDS-H-canaliculatus_F_contig1265:11090..112751622928985.7047746-CDS-H-canaliculatus_F_contig1265:11090..11275Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 11091..11275 +
1696845638.8385177-CDS-H-canaliculatus_F_contig1265:11090..112751696845638.8385177-CDS-H-canaliculatus_F_contig1265:11090..11275Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 11091..11275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1265.2216.1prot_H-canaliculatus_F_contig1265.2216.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1265 7506..11275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1265.2216.1

>prot_H-canaliculatus_F_contig1265.2216.1 ID=prot_H-canaliculatus_F_contig1265.2216.1|Name=mRNA_H-canaliculatus_F_contig1265.2216.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=253bp
MGDPDTSSPETDVEDWSEDTLSSSPQHAGYLPLDHYDGLEDDQQEEQEGQ
QGQEEQEEQQADDTSIEETLAGGDASSRQPDIASAILRAMEADYRACVES
EERLTSNGPIAPSSTSVHTTAEIPTQEHGQVEDNGTLSRERDDSSPDREE
RGSESMGGVPPPRPISPLGQDQAERVMRAMQGFALAAPALSPVRFEVDWG
SPDALANLTGPTAGTAATSTTGAPAAPVGPAAPAAPAAPAAPAARRGRVE
ET*
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mRNA from alignment at H-canaliculatus_F_contig1265:7377..11969+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1265.2216.1 ID=mRNA_H-canaliculatus_F_contig1265.2216.1|Name=mRNA_H-canaliculatus_F_contig1265.2216.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4593bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1265:7377..11969+ (Hapterophycus canaliculatus Oshoro5f female)
CACACACCTGTGCTATGTACGGTAGGCCCGGGCGGTTTGCCACACACGAC
TTGGTGCTTGTCAGCATTCCTTTTCCTACCAGCACGACGGTGACATCAGA
CATATACACACTCATAAGACGTGGGAACTATGGGAGATCCTGATACAAGC
AGTCCCGAAACGGACGTAGAAGACTGGAGCGAGGACACGTTGTCATCTTC
TCCGCAACATGCGGGTTACCTTCCCTTGGATCACTACGATGGGCTCGAAG
ACGATCAGCAGGAGGAGCAGGAGGGACAGCAGGGGCAGGAGGAGCAGGAG
GAGCAGCAGGCCGATGATACCTCCATTGAGGAAACACTAGCTGGTGGCGA
TGCGAGTTCTCGCCAGCCCGATGTGAGGTGTTGGACGTGCACGGAAATGA
GAAAATAGCACTTGCGGAATAACGTCCTGCCTTCCCTCGCTGGCTTGGAC
CCGCTCTATACAAGTAGACAGCTCGATGCACGCACGACTGACGACAGCGG
TTGCAAGTTGCAAGCGCGGGCCACACCCGTACGTCAGTATGCTATGTACA
CGGAGCCTGAGGTGCTTGTCCATGTTTGTGAGTGGACCGAAGAATTCACC
CAGCTATACTTCTATATGTCCTGTCGTTGTCGTGTACTCGTAATCGCGAC
AAATCGCGATGAAAACAGGAGGGGTGTTGGAATGTTGGAATGTTGGACAC
TGCTGTTGGATATTTACTTTTACAACTAGAAGAGGAGAATGCTGGGTCGG
GGGGCAGGGAGGCACGGGTACGAGGCATGAAGCAGGGTGTGCAGGTGTTT
ACTCGCGCTGTTTCGCGAAGTTTCGCGAAGAACACTGCAGCGGTGAACAC
CTGCATTCCTATAATAAGCTCTTTGTTTGGAAATGATTGGCGAAGGTTGG
GAGTAAGATCCCGTACTGCCTGCTGTCCTCTGGTCGGTGAAGCGGTACAT
ACATCCGGGCGTACCTCGCCGTCTGGCCGATGGAGGGCAAGGTGGTTGAG
CTGGGCATTGCACTGGCTCGTAACTGAATCGGTTTCACGTTGCGGTCCGC
ATGTCCACCACAGGAATCGCCATCAATCACGTACAATGTTGTACAATAAA
TCCAAAGCGCTGTGGATGAAAGTTCCTACCAGCACTACACTTATACCTTA
CCGCCGCCGCTCTCTTCTTCTTAAATCCAAAGCGCTGTGGATGAAAGCTC
CTACCAGCACTACACCTAAACCTATACCGCCGCCGCTCTCTTCTTCTTGA
GGTATAGAAGAGAACATCAAGACACCATTGTCGTTGCCCCTGAGCGGCAG
ATGTCGACGAATGGCGATTCATCTCGGTACGGGTTCTACCCGCAGTCGAT
TCTCCGTTGACAATCTCGGACTTGGATGCGCCCACTCGGCTGCTGAGCGA
CGTGCGATGACGGCTTCGAGTCTCCAACTTTCCCGTGCAATCGTGCAGCG
GACATGTCGAGGTCTCTGCATGCAAACCGGGACGTGCACAAGTATCGTTG
GAGCGGACAGCAAGTACCCTATCTTTCCGCGACGGAGAAAATGCTCGAGA
CGAGGCATGGGCGTGCGCGGCGTCTCACCTCTGGAAAGCGGCGAGCGCAG
CAATTTGCGAGATACTTGAGATATAAAAATCAACTCAGGGAGAAACTCCA
CGAGACTAACACTGTTTTTTTTGTAGCCACACAAGCCACAAGCCGCAATC
TGCACCCTGCCCCGAACCTTGATCCAAACGATGCCGCAGATCGCATCTGC
CATCCTGAGGGCGATGGAAGCAGACTATCGAGCGTGCGTTGAAAGCGAGG
TAAGGGACGAACCCGAAGCCAGCTGAAGCCCCACAACCAAGGATCCCTGA
GATGTTTTACTTAGCCAAGCAGCAGTATAAGTAGAGATAAGACCGAATCC
TCTTGTAACCGCTACGCGAGTTCGCTACACCACGTCAGCGTGGACCTTCC
TGACGTAGCTGACGCTTTTGTCGGTTACGCAGATTAGAGCTGGTACGTAT
GTAGCACACGTTTTTCAATGCCCCCTCCGACAATCGAACTCCCATACCCG
CATATCTGGTTGTATGCAGGAGAGATTGACAAGCAATGGTCCCATCGCAC
CTTCGAGCACCTCGGTGCATACCACAGCGGAAATCCCGACCCAAGAGCAT
GGACAGGTCGAGGACAACGGAACTTTATCCCGAGAGCGAGATGATTCGTC
ACCGGATAGGGAGGAGCGGGGGTCGGAATCGATGGGGGGGGTTCCACCAC
CAAGGCCTATTTCACCACTTGGCCAAGGTCTGTGATCCACGATCGATTTG
CTACAGTTGCTTCGGAGTTTCATTTGACTGCTGTCAGATGTCTTATCGTT
CACCATGTTCAGCGCTGAGACACCACGAAAGCAGAAGGGGACCCTAACCC
CCTGCCCCCAGCATACTTCTTTGTTTTCGACAAGACTCTTGTCCACTCAC
CCCACAGGGCCCCCATACCGCGGAGAGAGGTGCGAACTCCCGAGGTCCGC
CATTCTAGCGGCATGGGCATGCAGGGCACGTACTCCTATCGCTTTGCCGT
GATCCCTTTCTCTTTCGTACAATATTATTTCTCCAAAACTACACCCGCAT
GCCGTGGCGCCTAACATTGTTTCGCAATTTGTCCAGTTCGTGTCTTGGGC
ATTCTGCGCATTTCCATCCTGCGTCCCCCTGAATATTCCGCAAACATTTT
CAAAGAAAACATAACAACACCGTTAGAACACCTCCTGAGGTACGTCGTGT
GAGGCGTACCCCGAGGCTTCTGTTGAGTTCAAAACAGTGAGGGTTCATTG
ATGGGGACAAAAGCATGAACAGGAGAGAGTTTGTGCGTAACTTACTGCAA
ATGTTATGATGGATCATGAACAACTATGGGAAGCGAAACAATAGATCATA
GTGGAGGTTCTCGAGAAATGTTTTCTTTGAAATACTCCTTGTCTGTGATG
CGACGTGAAGAAATGAAGCAAGCGCAGAGTTCACAGCCAGCCAGGTAGTA
GTTGGAATGGCTCGTCCCAAGAGCATGTCAGTGGCGGAGCAGAAGGAAGC
AGATAGTGTCATTTTGTTGAACAACTAACTAGCCTTATCCGCGTGACGTA
TGCAGATCAAGCGGAGCGAGTGATGCGCGCGATGCAAGGTTTCGCTCTCG
CCGCTCCAGCACTTTCACGTGAGTTCTTCGTTGTATTGTAGCGGTAGTCG
ACATTGTAGAGACGCGTTTTTTTGAAAATTATGGATAAGATACGATACGC
TGAACGAATCTGATACGACAGGCATGATACAAACAAGCGTGTTTATTTCA
ATCTAAGTTTTCGTGTCTGGTCGACACGGACGGCTTTTTTTTACGCTCGT
CGGTCCTGCGACCTTGACCTTGACCAGCTTTGCTTGAAATCGAGCACGCG
CGTACACACAAAGATGGGTGTCCTTCGGATCTTGGTATTGTGGCTCTTCT
GTCGGATTCCCCTGCGACTCTTCATTTTCTACTGCACCACCTCTCTGCCC
TCTCTGTACATCGCTCTTCTCCAAGAACATTCTGCAATCCAGCCCTCCAC
TCCTCATTACAACACCCTTTCTCAGGGCGACATATCTGCGGATACGGCAT
GTAGCATCCCCCTTTGAACCGTTGTGCTTCTCGACGTCCCTGTGCAGCTG
CCGTTTAACTGCGATAAAAAAGCTTCCGGTCTCGCGTGCTTCTATGATAC
AATCTTTCGTCTAGCGGTGCGCTTCGAGGTGGACTGGGGGAGCCCCGACG
CGCTCGCTAATCTCACAGGACCTACCGCTGGTACAGCAGCTACATCAACC
ACGGGAGCACCAGCAGCGCCAGTAGGGCCAGCAGCGCCAGCAGCGCCAGC
AGCGCCAGCAGCGCCAGCAGCACGAAGGGGCAGGGTAGAGGAGACATAGC
GTGAGGCGGCACGCCGAGGAGCGAATCCTCCAAACGAGGATCAGCGATGA
ATAGGATGTGTAAGGAGACAGGGAGAAGTTGATAACAATTATCGCTACTA
CACTTATCGCTACTACACTTCTGTATTTGTAGTGCTGTGCTACATACCTG
TAGCGGATGGCTTATCACGATGCTCGACTGCGTCCTAATGGGAGTCGCCT
GTTTACATACAGCTGTGTGTACACGTCGCAGGCGAGTCGTCGTTCCCGTG
TTCGTGTGCATGGGGAATGCAAGACCAGGGATACAATCTGTACAAGTAGG
AGATCTGCAGGACGTGCTATAGGCTCTGGATGTGAAATGCGGAATATTTA
GTGCGGTCTGACGTGTAGGGTCCGCCGCCCAATCATAGTTGGTGTCTTGA
GCAGTGACACGTGATACGAAAATTCGTCGTGCTCAACCGGGTTGTAGAAG
TATTGGAAGGTATACAAATGGATCCTAGGCGATGTGTTCACGATCTCCGA
GATTTGAAGGCGTGGAAAACGATATCCAACCGTGTCATCATTACTGCTTC
TTCGGAGGCTGGAGCCAAACAAGATCTCGAATAATTGGAGGTGGAACACG
TTTTTTCCTATGCTGAAGCTTTATGTAGCTGCTTTGAAAGCTGTCTGGAT
CTCCGTCGATCGAAACGGAGACGCCCTCTCCTGGTATCTTTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1265:7377..11969+

>mRNA_H-canaliculatus_F_contig1265.2216.1 ID=mRNA_H-canaliculatus_F_contig1265.2216.1|Name=mRNA_H-canaliculatus_F_contig1265.2216.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1518bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1265:7377..11969+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGATCCTGATACAAGCAGTCCCGAAACGGACGTAGAAGACTGGAG
CGAGGACACGTTGTCATCTTCTCCGCAACATGCGGGTTACCTTCCCTTGG
ATCACTACGATGGGCTCGAAGACGATCAGCAGGAGGAGCAGGAGGGACAG
CAGGGGCAGGAGGAGCAGGAGGAGCAGCAGGCCGATGATACCTCCATTGA
GGAAACACTAGCTGGTGGCGATGCGAGTTCTCGCCAGCCCGATATGGGAG
ATCCTGATACAAGCAGTCCCGAAACGGACGTAGAAGACTGGAGCGAGGAC
ACGTTGTCATCTTCTCCGCAACATGCGGGTTACCTTCCCTTGGATCACTA
CGATGGGCTCGAAGACGATCAGCAGGAGGAGCAGGAGGGACAGCAGGGGC
AGGAGGAGCAGGAGGAGCAGCAGGCCGATGATACCTCCATTGAGGAAACA
CTAGCTGGTGGCGATGCGAGTTCTCGCCAGCCCGATATCGCATCTGCCAT
CCTGAGGGCGATGGAAGCAGACTATCGAGCGTGCGTTGAAAGCGAGATCG
CATCTGCCATCCTGAGGGCGATGGAAGCAGACTATCGAGCGTGCGTTGAA
AGCGAGGAGAGATTGACAAGCAATGGTCCCATCGCACCTTCGAGCACCTC
GGTGCATACCACAGCGGAAATCCCGACCCAAGAGCATGGACAGGTCGAGG
ACAACGGAACTTTATCCCGAGAGCGAGATGATTCGTCACCGGATAGGGAG
GAGCGGGGGTCGGAATCGATGGGGGGGGTTCCACCACCAAGGCCTATTTC
ACCACTTGGCCAAGGAGAGATTGACAAGCAATGGTCCCATCGCACCTTCG
AGCACCTCGGTGCATACCACAGCGGAAATCCCGACCCAAGAGCATGGACA
GGTCGAGGACAACGGAACTTTATCCCGAGAGCGAGATGATTCGTCACCGG
ATAGGGAGGAGCGGGGGTCGGAATCGATGGGGGGGGTTCCACCACCAAGG
CCTATTTCACCACTTGGCCAAGATCAAGCGGAGCGAGTGATGCGCGCGAT
GCAAGGTTTCGCTCTCGCCGCTCCAGCACTTTCACATCAAGCGGAGCGAG
TGATGCGCGCGATGCAAGGTTTCGCTCTCGCCGCTCCAGCACTTTCACCG
GTGCGCTTCGAGGTGGACTGGGGGAGCCCCGACGCGCTCGCTAATCTCAC
AGGACCTACCGCTGGTACAGCAGCTACATCAACCACGGGAGCACCAGCAG
CGCCAGTAGGGCCAGCAGCGCCAGCAGCGCCAGCAGCGCCAGCAGCGCCA
GCAGCACGAAGGGGCAGGGTAGAGGAGACATAGCGGTGCGCTTCGAGGTG
GACTGGGGGAGCCCCGACGCGCTCGCTAATCTCACAGGACCTACCGCTGG
TACAGCAGCTACATCAACCACGGGAGCACCAGCAGCGCCAGTAGGGCCAG
CAGCGCCAGCAGCGCCAGCAGCGCCAGCAGCGCCAGCAGCACGAAGGGGC
AGGGTAGAGGAGACATAG
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