mRNA_H-canaliculatus_F_contig12638.2210.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12638.2210.1 vs. uniprot
Match: D8LEJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEJ2_ECTSI) HSP 1 Score: 152 bits (384), Expect = 6.460e-39 Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = -2
Query: 2058 EPKKLAAVVYTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLSGGAFLEPCDGAVLLFSSPDEAQQFVDKDPYNTGGLVTKYQV 2306
EP KLAAVVYTYVDGM DKR P+R+ HLDLLK MTEEG CL GGAFLEPCDGAVLLFSSP++AQQFVDKDPYNTGGLVTKYQ+
Sbjct: 89 EPAKLAAVVYTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSPEKAQQFVDKDPYNTGGLVTKYQI 171
BLAST of mRNA_H-canaliculatus_F_contig12638.2210.1 vs. uniprot
Match: A0A6H5JY04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY04_9PHAE) HSP 1 Score: 140 bits (354), Expect = 9.050e-35 Identity = 73/102 (71.57%), Postives = 90/102 (88.24%), Query Frame = 2
Query: 119 DSAELSKAHGECQRLEEGIHRLRRELESCREEAKQSAERENMAQFQNQLLIDMLAVARADEGKFKTRLGQEGARHAELSRSLQQAYTRILAAGLDPGVSEAP 424
DS EL+ A GEC+RLE+ + LRR+LE+CR++AK+ AE+ENMA FQNQLLIDMLAVARAD+G F+T+L QE ARHA LSRSL+QAYT++LAAGLDPGVS+AP
Sbjct: 85 DSRELATAQGECKRLEKEVMGLRRDLENCRKDAKRLAEQENMATFQNQLLIDMLAVARADQGIFRTKLEQESARHAVLSRSLEQAYTKLLAAGLDPGVSDAP 186
BLAST of mRNA_H-canaliculatus_F_contig12638.2210.1 vs. uniprot
Match: A0A835ZJU7_9STRA (YCII domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJU7_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 2.880e-19 Identity = 39/80 (48.75%), Postives = 58/80 (72.50%), Query Frame = -2
Query: 2058 KLAAVVYTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLSGGAFLEPCDGAVLLFSSPDEAQQFVDKDPYNTGGLVTKYQV 2297
+L + YTYV+GM +KR PHR AHL +L +T++G+C+ GGAF+ P DGA+LLF + A+ F +DPY+ GL+TK+ +
Sbjct: 2 QLYMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQTRAAAETFAAQDPYSKAGLITKFNI 81
BLAST of mRNA_H-canaliculatus_F_contig12638.2210.1 vs. uniprot
Match: A0A7S3JUF8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUF8_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.670e-18 Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = -2
Query: 2052 AEPKKLAAVVYTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLSGGAFLEPCDGAVLLFSSP----DEAQQFVDKDPYNTGGLVTKYQVSQ 2309
+ P K A+ YTYVDGM +KR P+R AHLD LK M + GKC+ GGAF +PCDGAV+LF S +E + F + DPY LV + VS+
Sbjct: 49 SSPVKFYALRYTYVDGMLEKRQPYRQAHLDGLKKMADLGKCVLGGAFNDPCDGAVVLFDSSTTTKEEIEAFANVDPYVVNNLVPSWSVSE 138
BLAST of mRNA_H-canaliculatus_F_contig12638.2210.1 vs. uniprot
Match: UPI00196B6146 (YciI family protein n=1 Tax=Conexibacter sp. SYSU D00693 TaxID=2812560 RepID=UPI00196B6146) HSP 1 Score: 77.0 bits (188), Expect = 1.410e-13 Identity = 33/81 (40.74%), Postives = 56/81 (69.14%), Query Frame = -2
Query: 2058 KKLAAVVYTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLSGGAFLEPCDGAVLLFSSPDEAQQFVDKDPYNTGGLVTKYQV 2300
++LAA+ YTYV+ + ++R PHR AHL +L+ + + G+ + G +P GA+++F SP+ AQ FV +DPY G+VT +++
Sbjct: 2 ERLAALHYTYVEDVLERREPHREAHLAILRELKDAGELVMAGPVGDPPAGALIVFRSPEAAQAFVARDPYVEAGIVTSHRI 82
BLAST of mRNA_H-canaliculatus_F_contig12638.2210.1 vs. uniprot
Match: L8HGR4_ACACA (YCIIrelated domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HGR4_ACACA) HSP 1 Score: 76.3 bits (186), Expect = 2.430e-12 Identity = 35/81 (43.21%), Postives = 57/81 (70.37%), Query Frame = -2
Query: 2058 KLAAVVYTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLSGGAFLEPCDGAVLLFS-SPDEAQQFVDKDPYNTGGLVTKYQV 2297
KL A++YTYVDG+ +KRAPHR+AHL +K ++G+ ++GGA+ + G ++L + + D+ +F DPY GLVT+++V
Sbjct: 78 KLHALMYTYVDGILEKRAPHRAAHLAYVKQYEDDGRLVAGGAWEDASGGLIVLRTDTADDVHRFAHDDPYVKAGLVTRHEV 158
BLAST of mRNA_H-canaliculatus_F_contig12638.2210.1 vs. uniprot
Match: A0A0G4ERK1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ERK1_VITBC) HSP 1 Score: 74.3 bits (181), Expect = 4.030e-12 Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = -2
Query: 2007 YTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLSGGAFLEPCDGAVLLFS--SPDEAQQFVDKDPYNTGGLVTKYQVSQGPRFCETFVDISVDV 2279
Y+YV + +KR PHRS HL LLKT + + L GGAF P DGA+L+F S + ++FV +DPY LVT + + + +D+ V V
Sbjct: 28 YSYVADVLEKRQPHRSGHLQLLKTFFQPDELLLGGAFANPPDGAMLVFRNVSKERIERFVSQDPYVRNDLVTHWDIRDWSCVVGSVLDVGVGV 120
BLAST of mRNA_H-canaliculatus_F_contig12638.2210.1 vs. uniprot
Match: A0A315X5V4_9CHLR (YCII domain-containing protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A315X5V4_9CHLR) HSP 1 Score: 68.6 bits (166), Expect = 1.340e-10 Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = -2
Query: 2052 YTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLSGGAFLEPCDGAVLLFSSPDEAQQFVDKDPYNTGGLVTKYQVSQ 2279
Y YV + +R P R AHLDL + + + K GA+ +P DGAV +F+S + A++FV +DPY GLVT +++ +
Sbjct: 7 YDYVADVLTRRDPFRPAHLDLARGFSADRKLKLAGAYTDPIDGAVFVFTSREAAEEFVSRDPYVANGLVTGHRIRE 82
BLAST of mRNA_H-canaliculatus_F_contig12638.2210.1 vs. uniprot
Match: A0A2D0N840_9BACT (YCII domain-containing protein n=1 Tax=Flavilitoribacter nigricans DSM 23189 = NBRC 102662 TaxID=1122177 RepID=A0A2D0N840_9BACT) HSP 1 Score: 68.6 bits (166), Expect = 1.420e-10 Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = -2
Query: 2058 YTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLSGGAFLEPCDGAVLLFSSPDE--AQQFVDKDPYNTGGLVTKYQV 2279
Y VD +KRAP+RSAHLDL+K + + GA EP DGAVL+F D A+ F DPY GL+T++ V
Sbjct: 7 YKTVDNFIEKRAPYRSAHLDLVKEAQKNEFLIMAGALAEPADGAVLVFRGEDASVAEDFARNDPYVQNGLITEWSV 82
BLAST of mRNA_H-canaliculatus_F_contig12638.2210.1 vs. uniprot
Match: UPI001604AB2C (uncharacterized protein LOC110853477 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI001604AB2C) HSP 1 Score: 69.7 bits (169), Expect = 1.700e-10 Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = -2
Query: 2052 KLAAVVYTY-VDGMEDKRAPHRSAHLDLLKTMTEEGKCLSGGAFLEPCDGAVLLF-SSPDEAQQFVDKDPYNTGGLVTKYQVSQ 2297
K + YTY + + ++RAPHR HL L K T GK + GGAF++P DGA L+F S ++ ++F+ +DPY G+ T + V +
Sbjct: 38 KYYLLSYTYNPENLVERRAPHRPGHLALAKEFTTGGKLILGGAFVDPIDGAALVFRGSEEDVKEFIRRDPYVQKGIATGHNVRE 121 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12638.2210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12638.2210.1 >prot_H-canaliculatus_F_contig12638.2210.1 ID=prot_H-canaliculatus_F_contig12638.2210.1|Name=mRNA_H-canaliculatus_F_contig12638.2210.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=62bp MAQFQNQLLIDMLAVARADEGKFKTRLGQEGARHAELSRSLQQAYTRILAback to top mRNA from alignment at H-canaliculatus_F_contig12638:293..3246- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12638.2210.1 ID=mRNA_H-canaliculatus_F_contig12638.2210.1|Name=mRNA_H-canaliculatus_F_contig12638.2210.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2954bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12638:293..3246- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12638:293..3246- >mRNA_H-canaliculatus_F_contig12638.2210.1 ID=mRNA_H-canaliculatus_F_contig12638.2210.1|Name=mRNA_H-canaliculatus_F_contig12638.2210.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12638:293..3246- (Hapterophycus canaliculatus Oshoro5f female)back to top |