mRNA_H-canaliculatus_F_contig12636.2206.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12636.2206.1
Unique NamemRNA_H-canaliculatus_F_contig12636.2206.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12636.2206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12636contigH-canaliculatus_F_contig12636:89..1519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1386
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12636.2206.1prot_H-canaliculatus_F_contig12636.2206.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12636 325..1104 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928984.0462728-UTR-H-canaliculatus_F_contig12636:88..3241622928984.0462728-UTR-H-canaliculatus_F_contig12636:88..324Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12636 89..324 +
1696845638.2420738-UTR-H-canaliculatus_F_contig12636:88..3241696845638.2420738-UTR-H-canaliculatus_F_contig12636:88..324Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12636 89..324 +
1622928984.0826685-UTR-H-canaliculatus_F_contig12636:1104..12381622928984.0826685-UTR-H-canaliculatus_F_contig12636:1104..1238Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12636 1105..1238 +
1696845638.264197-UTR-H-canaliculatus_F_contig12636:1104..12381696845638.264197-UTR-H-canaliculatus_F_contig12636:1104..1238Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12636 1105..1238 +
1622928984.0994408-UTR-H-canaliculatus_F_contig12636:1283..15191622928984.0994408-UTR-H-canaliculatus_F_contig12636:1283..1519Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12636 1284..1519 +
1696845638.2738132-UTR-H-canaliculatus_F_contig12636:1283..15191696845638.2738132-UTR-H-canaliculatus_F_contig12636:1283..1519Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12636 1284..1519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928984.065287-CDS-H-canaliculatus_F_contig12636:324..11041622928984.065287-CDS-H-canaliculatus_F_contig12636:324..1104Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12636 325..1104 +
1696845638.2527657-CDS-H-canaliculatus_F_contig12636:324..11041696845638.2527657-CDS-H-canaliculatus_F_contig12636:324..1104Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12636 325..1104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12636.2206.1

>prot_H-canaliculatus_F_contig12636.2206.1 ID=prot_H-canaliculatus_F_contig12636.2206.1|Name=mRNA_H-canaliculatus_F_contig12636.2206.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=260bp
MQSTSPTKQSDCPLALDPPPPPLSLISLISLPCWRPHVRWLKRTPARRRP
CTRPPRSGPLRGQITPERREMHARPHACMHALVENKTEERNREHLLLCVA
FKSLHACLRFPSLSVKKPGPALLSSRLPFLHPFLLHEASVATGTTTTPFP
TLLVSLLHVPLKEERPYYPRMGEPSLRGTAAAKGLRPRRTACPILLQGHR
CCRAFIRALLFELPPTRPRRASYGGTKPAGARRSSWFALNTAAKFVIPGG
SHTAYCCVH*
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mRNA from alignment at H-canaliculatus_F_contig12636:89..1519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12636.2206.1 ID=mRNA_H-canaliculatus_F_contig12636.2206.1|Name=mRNA_H-canaliculatus_F_contig12636.2206.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1431bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12636:89..1519+ (Hapterophycus canaliculatus Oshoro5f female)
GCCAAGTCCCCCACGTGCTGCATGCTCGATGCACGCTCGAGGAACGGCCA
AGAAAGGCAACCAGAGATAAGGCTACGCCCACACCCCGGCTTGAGAACGC
CTCCGCAAGAAACCGCCCGCGAGAGGCGAACCGACACCGACACGGCCATC
TGCCGGGCGATTCCGGCGCGAGCTCCACGGGAAATGCATTCACTCAGCGC
AGCCTTTTCCAGCCAGCCATCCGTTTCCCGACATGTATGCAATCGACCAG
TCCCACGAAGCAGAGCGATTGCCCTCTTGCGCTCGACCCCCCACCCCCTC
CTCTCTCTCTTATCTCTCTCATCTCTCTTCCGTGCTGGCGTCCTCACGTC
CGGTGGCTTAAGCGCACACCCGCCCGGAGACGGCCCTGCACCCGGCCGCC
CCGGTCCGGTCCACTCCGTGGGCAGATCACCCCCGAGAGGAGAGAAATGC
ACGCGCGACCCCATGCGTGCATGCATGCACTCGTGGAAAACAAAACAGAA
GAACGAAACAGGGAGCACCTACTGCTGTGCGTAGCCTTCAAGTCTCTGCA
CGCCTGTCTTCGCTTCCCGTCGCTCTCTGTAAAAAAACCCGGCCCTGCCC
TTCTCTCCTCCCGCCTCCCCTTCCTGCATCCATTTCTGTTGCACGAGGCG
TCAGTTGCAACAGGCACAACAACCACCCCCTTTCCTACCCTCCTCGTGTC
CCTCCTTCATGTGCCGCTCAAAGAAGAGCGTCCCTATTACCCAAGGATGG
GAGAGCCATCTCTACGAGGAACGGCGGCCGCCAAAGGCCTGCGTCCCCGT
CGGACGGCCTGCCCTATCCTTCTCCAGGGGCACCGGTGCTGCCGCGCATT
TATCCGCGCATTGCTTTTTGAACTACCTCCCACCCGGCCCCGGCGGGCGT
CGTATGGAGGTACAAAACCCGCCGGTGCTCGGAGGAGCTCCTGGTTTGCC
CTGAACACTGCCGCCAAGTTTGTCATCCCCGGTGGGTCGCATACGGCATA
CTGCTGCGTACACTGAAGCAGGCAAATCGGCATCATACACCTCCAGCCCA
GTCTCTTAATAGACAAGGTCAGCATCCACCACGTGCCATCGACCAGGGGC
TTGTTAAGACCTCCACACGTGACGAGAGAGTACGGCATCGGCAGCTGGAA
ATCGATCGCTGATCGAGAGACAGCGTCTCCTCTGAACGGCGATCGATCGA
TCTTGGCACCAAGCAATTCCCGCACCCGGCTGCGGGCTCTTTCCCGCCTG
TGATCACGTCTCTTGCTGCCGTCGAGAACGACCGCAACGGTCATTCCCTC
CCCCTCCCACCCCCCAAGAATCATACGCCGGAAGACCCACCCAACAAGAC
GGGTGACCGACGACTAGAGGAGGCGGGACCGGCACGCCAAAGAAGACGTA
GAAAATGTACAAATTTGAGACGTGCGGCACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12636:89..1519+

>mRNA_H-canaliculatus_F_contig12636.2206.1 ID=mRNA_H-canaliculatus_F_contig12636.2206.1|Name=mRNA_H-canaliculatus_F_contig12636.2206.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1560bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12636:89..1519+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAATCGACCAGTCCCACGAAGCAGAGCGATTGCCCTCTTGCGCTCGA
CCCCCCACCCCCTCCTCTCTCTCTTATCTCTCTCATCTCTCTTCCGTGCT
GGCGTCCTCACGTCCGGTGGCTTAAGCGCACACCCGCCCGGAGACGGCCC
TGCACCCGGCCGCCCCGGTCCGGTCCACTCCGTGGGCAGATCACCCCCGA
GAGGAGAGAAATGCACGCGCGACCCCATGCGTGCATGCATGCACTCGTGG
AAAACAAAACAGAAGAACGAAACAGGGAGCACCTACTGCTGTGCGTAGCC
TTCAAGTCTCTGCACGCCTGTCTTCGCTTCCCGTCGCTCTCTGTAAAAAA
ACCCGGCCCTGCCCTTCTCTCCTCCCGCCTCCCCTTCCTGCATCCATTTC
TGTTGCACGAGGCGTCAGTTGCAACAGGCACAACAACCACCCCCTTTCCT
ACCCTCCTCGTGTCCCTCCTTCATGTGCCGCTCAAAGAAGAGCGTCCCTA
TTACCCAAGGATGGGAGAGCCATCTCTACGAGGAACGGCGGCCGCCAAAG
GCCTGCGTCCCCGTCGGACGGCCTGCCCTATCCTTCTCCAGGGGCACCGG
TGCTGCCGCGCATTTATCCGCGCATTGCTTTTTGAACTACCTCCCACCCG
GCCCCGGCGGGCGTCGTATGGAGGTACAAAACCCGCCGGTGCTCGGAGGA
GCTCCTGGTTTGCCCTGAACACTGCCGCCAAGTTTGTCATCCCCGGTGGG
TCGCATACGGCATACTGCTGCGTACACTGAATGCAATCGACCAGTCCCAC
GAAGCAGAGCGATTGCCCTCTTGCGCTCGACCCCCCACCCCCTCCTCTCT
CTCTTATCTCTCTCATCTCTCTTCCGTGCTGGCGTCCTCACGTCCGGTGG
CTTAAGCGCACACCCGCCCGGAGACGGCCCTGCACCCGGCCGCCCCGGTC
CGGTCCACTCCGTGGGCAGATCACCCCCGAGAGGAGAGAAATGCACGCGC
GACCCCATGCGTGCATGCATGCACTCGTGGAAAACAAAACAGAAGAACGA
AACAGGGAGCACCTACTGCTGTGCGTAGCCTTCAAGTCTCTGCACGCCTG
TCTTCGCTTCCCGTCGCTCTCTGTAAAAAAACCCGGCCCTGCCCTTCTCT
CCTCCCGCCTCCCCTTCCTGCATCCATTTCTGTTGCACGAGGCGTCAGTT
GCAACAGGCACAACAACCACCCCCTTTCCTACCCTCCTCGTGTCCCTCCT
TCATGTGCCGCTCAAAGAAGAGCGTCCCTATTACCCAAGGATGGGAGAGC
CATCTCTACGAGGAACGGCGGCCGCCAAAGGCCTGCGTCCCCGTCGGACG
GCCTGCCCTATCCTTCTCCAGGGGCACCGGTGCTGCCGCGCATTTATCCG
CGCATTGCTTTTTGAACTACCTCCCACCCGGCCCCGGCGGGCGTCGTATG
GAGGTACAAAACCCGCCGGTGCTCGGAGGAGCTCCTGGTTTGCCCTGAAC
ACTGCCGCCAAGTTTGTCATCCCCGGTGGGTCGCATACGGCATACTGCTG
CGTACACTGA
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