mRNA_H-canaliculatus_F_contig12632.2205.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12632.2205.1
Unique NamemRNA_H-canaliculatus_F_contig12632.2205.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12632.2205.1 vs. uniprot
Match: A0A6H5JIE6_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIE6_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.230e-32
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:   10 RRKDVDQIQDELVKEEEQGEETVFDVDDDLPGQGQFYCTPCARHFTDAQTKVTHIRSKLHKRR 198
            RRKDVDQIQDEL+ EEE+GEE VF+VDDDLPGQGQFYCTPCARHFTD QTK THIRSKLHKRR
Sbjct:   31 RRKDVDQIQDELMVEEEKGEEMVFEVDDDLPGQGQFYCTPCARHFTDQQTKSTHIRSKLHKRR 93
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BLAST of mRNA_H-canaliculatus_F_contig12632.2205.1 vs. uniprot
Match: A0A1V9ZTM5_9STRA (C2H2-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTM5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.060e-21
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 TDFRRKDVDQIQDELVKEEEQGEETVFDVDDDLPGQGQFYCTPCARHFTDAQTKVTHIRSKLHKRR 198
            T  R +D+DQIQD+L KE   G+   F+VD+DLPG GQFYCTPC RHF DA  +  HI+SK+HKRR
Sbjct:   24 TKSRSRDIDQIQDDLKKEAATGKPMAFEVDEDLPGLGQFYCTPCGRHFMDAVARAVHIKSKVHKRR 89
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BLAST of mRNA_H-canaliculatus_F_contig12632.2205.1 vs. uniprot
Match: A0A1V9ZQ49_9STRA (C2H2-type domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ49_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.320e-21
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 TDFRRKDVDQIQDELVKEEEQGEETVFDVDDDLPGQGQFYCTPCARHFTDAQTKVTHIRSKLHKRR 198
            T  R +D+DQIQD+L KE+  G+   F +D+DLPG GQFYCTPC RHF DA  +  H++SK+HKRR
Sbjct:   24 TKSRNRDIDQIQDDLKKEQLTGKSMTFQIDEDLPGLGQFYCTPCGRHFMDAVARAVHLKSKVHKRR 89
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BLAST of mRNA_H-canaliculatus_F_contig12632.2205.1 vs. uniprot
Match: F0WBU9_9STRA (Uncharacterized protein AlNc14C53G4140 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBU9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 8.270e-21
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 TDFRRKDVDQIQDELVKEEEQGEETVFDVDDDLPGQGQFYCTPCARHFTDAQTKVTHIRSKLHKRR 198
            T  R +DVDQIQD+L  E +Q +   F++D+DLPG GQ+YCTPCARHF DA T+  HIR+K+HKRR
Sbjct:   24 TKRRHRDVDQIQDDLKLETQQKKPLKFEIDEDLPGLGQYYCTPCARHFIDASTRELHIRTKVHKRR 89
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BLAST of mRNA_H-canaliculatus_F_contig12632.2205.1 vs. uniprot
Match: A0A024G9F2_9STRA (C2H2-type domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G9F2_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.170e-20
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 TDFRRKDVDQIQDELVKEEEQGEETVFDVDDDLPGQGQFYCTPCARHFTDAQTKVTHIRSKLHKRR 198
            T  R +DVDQIQD+L  E +Q +   F++D+DLPG GQ+YCTPCARHF DA T+  H+R+K+HKRR
Sbjct:   24 TKRRSRDVDQIQDDLKLESQQNKPLKFEIDEDLPGLGQYYCTPCARHFIDATTRDLHVRTKVHKRR 89
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BLAST of mRNA_H-canaliculatus_F_contig12632.2205.1 vs. uniprot
Match: A0A024UJ99_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UJ99_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.180e-20
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 TDFRRKDVDQIQDELVKEEEQGEETVFDVDDDLPGQGQFYCTPCARHFTDAQTKVTHIRSKLHKRR 198
            T  R +D+DQIQD+L KEEE G +  F++D+DLPG GQ+YCTPC RHF  A  +  HI SK+HKRR
Sbjct:   24 TKSRSRDIDQIQDDLKKEEETGVKMTFELDEDLPGLGQYYCTPCGRHFITANARDVHIASKVHKRR 89
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12632.2205.1 vs. uniprot
Match: A0A485LT70_9STRA (Aste57867_25424 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LT70_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.240e-20
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   10 RRKDVDQIQDELVKEEEQGEETVFDVDDDLPGQGQFYCTPCARHFTDAQTKVTHIRSKLHKRR 198
            R +D+DQIQD+L KE+E G++  FD+D+DLPG GQ+YCTPC RHF  A  +  HI SK+HKRR
Sbjct:   27 RSRDIDQIQDDLKKEQELGQKMTFDMDEDLPGLGQYYCTPCGRHFITANARDVHIVSKVHKRR 89
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BLAST of mRNA_H-canaliculatus_F_contig12632.2205.1 vs. uniprot
Match: T0QYK1_SAPDV (C2H2-type domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QYK1_SAPDV)

HSP 1 Score: 87.0 bits (214), Expect = 2.590e-20
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:    1 TDFRRKDVDQIQDELVKEEEQGEETVFDVDDDLPGQGQFYCTPCARHFTDAQTKVTHIRSKLHKRR 198
            T  R +D+DQIQD+L KEE  G    F++D+DLPG GQFYCTPC RHF D   +  HI+SK+HKRR
Sbjct:   39 TKSRSRDIDQIQDDLKKEETTGTVMTFELDEDLPGLGQFYCTPCGRHFMDEVARTVHIKSKVHKRR 104
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12632.2205.1 vs. uniprot
Match: A0A6G0XDP3_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XDP3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.270e-20
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   10 RRKDVDQIQDELVKEEEQGEETVFDVDDDLPGQGQFYCTPCARHFTDAQTKVTHIRSKLHKRR 198
            R +D+DQIQD+L KE E G +  F++D+DLPG GQ+YCTPCARHF  A  +  HI SK+HKRR
Sbjct:   27 RARDIDQIQDDLKKESETGAKITFEMDEDLPGLGQYYCTPCARHFITANARDVHIASKVHKRR 89
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12632.2205.1 vs. uniprot
Match: A0A8K1FHU3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHU3_PYTOL)

HSP 1 Score: 85.9 bits (211), Expect = 4.740e-20
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 TDFRRKDVDQIQDELVKEEEQGEETVFDVDDDLPGQGQFYCTPCARHFTDAQTKVTHIRSKLHKRR 198
            T  R +D+DQIQD+L  E+  G+   F+VD+DLPG GQ+YCTPC RHF DA+T+  HI+ KLHKRR
Sbjct:   24 TKCRGRDIDQIQDDLKLEKLSGKAMSFEVDEDLPGLGQYYCTPCGRHFIDAKTRDVHIKGKLHKRR 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12632.2205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIE6_9PHAE5.230e-3288.89C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A1V9ZTM5_9STRA3.060e-2160.61C2H2-type domain-containing protein n=1 Tax=Achlya... [more]
A0A1V9ZQ49_9STRA6.320e-2157.58C2H2-type domain-containing protein n=1 Tax=Thraus... [more]
F0WBU9_9STRA8.270e-2160.61Uncharacterized protein AlNc14C53G4140 n=1 Tax=Alb... [more]
A0A024G9F2_9STRA1.170e-2059.09C2H2-type domain-containing protein n=1 Tax=Albugo... [more]
A0A024UJ99_9STRA2.180e-2059.09C2H2-type domain-containing protein n=1 Tax=Aphano... [more]
A0A485LT70_9STRA2.240e-2060.32Aste57867_25424 protein n=1 Tax=Aphanomyces stella... [more]
T0QYK1_SAPDV2.590e-2059.09C2H2-type domain-containing protein n=1 Tax=Saprol... [more]
A0A6G0XDP3_9STRA4.270e-2060.32C2H2-type domain-containing protein n=1 Tax=Aphano... [more]
A0A8K1FHU3_PYTOL4.740e-2059.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12632contigH-canaliculatus_F_contig12632:537..737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue5.5e-24
Seed eggNOG ortholog2880.D7FMT7
Preferred nameZNF593
KEGG rclassRC00055,RC00523
KEGG koko:K01875,ko:K14821
KEGG ReactionR03662,R08218
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000054,GO:0000055,GO:0000278,GO:0000281,GO:0000282,GO:0000910,GO:0000981,GO:0003674,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007049,GO:0007163,GO:0008104,GO:0008150,GO:0008270,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015031,GO:0015833,GO:0015931,GO:0019219,GO:0019222,GO:0022402,GO:0022613,GO:0030010,GO:0030684,GO:0030687,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033750,GO:0034613,GO:0042254,GO:0042886,GO:0043021,GO:0043023,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0044085,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045893,GO:0045935,GO:0045944,GO:0046872,GO:0046907,GO:0046914,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051098,GO:0051100,GO:0051101,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051254,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0061640,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0140110,GO:1902680,GO:1903025,GO:1903026,GO:1903047,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000677,GO:2000678,GO:2001141
EggNOG free text desc.ribosomal large subunit binding
EggNOG OGsCOG5112@1,KOG3408@2759
EC6.1.1.11
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03009,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionU1 zinc finger protein
Ec32 orthologEc-21_000210.1
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928984.0026786-CDS-H-canaliculatus_F_contig12632:536..7371622928984.0026786-CDS-H-canaliculatus_F_contig12632:536..737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12632 537..737 -
1696845638.2302685-CDS-H-canaliculatus_F_contig12632:536..7371696845638.2302685-CDS-H-canaliculatus_F_contig12632:536..737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12632 537..737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12632.2205.1prot_H-canaliculatus_F_contig12632.2205.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12632 537..737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12632.2205.1

>prot_H-canaliculatus_F_contig12632.2205.1 ID=prot_H-canaliculatus_F_contig12632.2205.1|Name=mRNA_H-canaliculatus_F_contig12632.2205.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=67bp
TDFRRKDVDQIQDELVKEEEQGEETVFDVDDDLPGQGQFYCTPCARHFTD
AQTKVTHIRSKLHKRR*
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mRNA from alignment at H-canaliculatus_F_contig12632:537..737-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12632.2205.1 ID=mRNA_H-canaliculatus_F_contig12632.2205.1|Name=mRNA_H-canaliculatus_F_contig12632.2205.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=201bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12632:537..737- (Hapterophycus canaliculatus Oshoro5f female)
ACCGACTTCAGGCGAAAGGACGTGGACCAGATTCAGGACGAGTTGGTGAA
AGAAGAGGAACAGGGAGAGGAGACTGTCTTCGATGTGGACGACGACCTAC
CGGGGCAGGGGCAGTTCTACTGCACTCCCTGTGCCCGCCACTTCACCGAC
GCACAAACCAAGGTCACCCACATAAGGTCGAAGCTACACAAGCGCAGGTG
A
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12632:537..737-

>mRNA_H-canaliculatus_F_contig12632.2205.1 ID=mRNA_H-canaliculatus_F_contig12632.2205.1|Name=mRNA_H-canaliculatus_F_contig12632.2205.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=402bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12632:537..737- (Hapterophycus canaliculatus Oshoro5f female)
ACCGACTTCAGGCGAAAGGACGTGGACCAGATTCAGGACGAGTTGGTGAA
AGAAGAGGAACAGGGAGAGGAGACTGTCTTCGATGTGGACGACGACCTAC
CGGGGCAGGGGCAGTTCTACTGCACTCCCTGTGCCCGCCACTTCACCGAC
GCACAAACCAAGGTCACCCACATAAGGTCGAAGCTACACAAGCGCAGGTG
AACCGACTTCAGGCGAAAGGACGTGGACCAGATTCAGGACGAGTTGGTGA
AAGAAGAGGAACAGGGAGAGGAGACTGTCTTCGATGTGGACGACGACCTA
CCGGGGCAGGGGCAGTTCTACTGCACTCCCTGTGCCCGCCACTTCACCGA
CGCACAAACCAAGGTCACCCACATAAGGTCGAAGCTACACAAGCGCAGGT
GA
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