mRNA_H-canaliculatus_F_contig1263.2202.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1263.2202.1
Unique NamemRNA_H-canaliculatus_F_contig1263.2202.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1263.2202.1 vs. uniprot
Match: D7FMF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF7_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 6.980e-52
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:    4 TTTRSRLMLTGREHYERELKQQAFLMLGSLEAFGNPVGLLRGMGQGMQDFVKEPVLGLLKSVEDLAPEELMHGMARGAGSLLNHSVGGVAKSVSLITG 297
            TTTRSRL LT REHYERELKQQAFLMLGSLEAFGNPVGL+RGMGQGMQDFVKEPVLGLLKSVEDLAPEELMHGMARGAGSLLNHSVGGVA SVSLITG
Sbjct:  344 TTTRSRLTLTAREHYERELKQQAFLMLGSLEAFGNPVGLVRGMGQGMQDFVKEPVLGLLKSVEDLAPEELMHGMARGAGSLLNHSVGGVANSVSLITG 441
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BLAST of mRNA_H-canaliculatus_F_contig1263.2202.1 vs. uniprot
Match: A0A6H5KXT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT8_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 2.040e-51
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:    4 TTTRSRLMLTGREHYERELKQQAFLMLGSLEAFGNPVGLLRGMGQGMQDFVKEPVLGLLKSVEDLAPEELMHGMARGAGSLLNHSVGGVAKSVSLITG 297
            TTTRSRL LT REHYERELKQQAFLMLGSLEAFGNPVGL+RGMGQGMQDFVKEPVLGLLKSVEDLAPEELMHGMARGAGSLLNHSVGGVA SVSLITG
Sbjct:  697 TTTRSRLTLTAREHYERELKQQAFLMLGSLEAFGNPVGLVRGMGQGMQDFVKEPVLGLLKSVEDLAPEELMHGMARGAGSLLNHSVGGVANSVSLITG 794
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BLAST of mRNA_H-canaliculatus_F_contig1263.2202.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA)

HSP 1 Score: 115 bits (289), Expect = 6.220e-28
Identity = 55/87 (63.22%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:   43 HYERELKQQAFLMLGSLEAFGNPVGLLRGMGQGMQDFVKEPVLGLLKSVEDLAPEELMHGMARGAGSLLNHSVGGVAKSVSLITGRL 303
            HY   +KQ   LMLG+LEAFGNPVGL RG+ QG+QDF+ EPVLGL++SVE+L PEE   G+ARG GSLL H+VGG+A S S+I G +
Sbjct: 5355 HYLSTVKQHVLLMLGALEAFGNPVGLFRGVSQGVQDFISEPVLGLVRSVEELRPEEFFAGIARGGGSLLKHTVGGMANSASMIAGTI 5441
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BLAST of mRNA_H-canaliculatus_F_contig1263.2202.1 vs. uniprot
Match: A0A7R9WT54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WT54_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.730e-25
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:   43 HYERELKQQAFLMLGSLEAFGNPVGLLRGMGQGMQDFVKEPVLGLLKSVEDLAPEELMHGMARGAGSLLNHSVGGVAKSVSLIT 294
            HY   L+Q    +LGSL AFGNP+GL+RG+G+GM DFV EPV GL KSV++L P  L  G+ARG GSL  H+VGG A S SL+T
Sbjct:   27 HYMASLRQNVPALLGSLAAFGNPLGLIRGVGEGMADFVSEPVKGLQKSVQELDPGYLFDGVARGTGSLARHTVGGFADSASLLT 110
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BLAST of mRNA_H-canaliculatus_F_contig1263.2202.1 vs. uniprot
Match: A0A7S2LN01_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LN01_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.490e-21
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:   43 HYERELKQQAFLMLGSLEAFGNPVGLLRGMGQGMQDFVKEPVLGLLKSVEDLAPEELMHGMARGAGSLLNHSVGGVAKSVSLIT 294
            HY   L+     +LGSL AFGNP+GL+RG+G G+ DFV EP+ GL KS+E+L P  ++ G+ARG GSL  H++GGVA S SL+T
Sbjct:  317 HYLAALRSNVPSLLGSLAAFGNPLGLIRGLGDGVSDFVSEPIKGLKKSLEELDPTFVIDGVARGTGSLARHTIGGVADSASLLT 400
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BLAST of mRNA_H-canaliculatus_F_contig1263.2202.1 vs. uniprot
Match: A0A7S2PQX2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PQX2_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.580e-21
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:   43 HYERELKQQAFLMLGSLEAFGNPVGLLRGMGQGMQDFVKEPVLGLLKSVEDLAPEELMHGMARGAGSLLNHSVGGVAKSVSLIT 294
            HY   L+     +LGSL AFGNP+GL+RG+G G+ DFV EP+ GL KS+E+L P  ++ G+ARG GSL  H++GGVA S SL+T
Sbjct:  528 HYLAALRSNVPSLLGSLAAFGNPLGLIRGLGDGVSDFVSEPIKGLKKSLEELDPTFVIDGVARGTGSLARHTIGGVADSASLLT 611
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BLAST of mRNA_H-canaliculatus_F_contig1263.2202.1 vs. uniprot
Match: A0A7R9ZE76_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZE76_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 6.970e-20
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   43 HYERELKQQAFLMLGSLEAFGNPVGLLRGMGQGMQDFVKEPVLGLLKSVEDLAPEELMHGMARGAGSLLNHSVGGVAKSVSLIT 294
            HY   L+     +LGSL  FGNPVGL+RG+G G+ DFV EP+ GL +SVE+L P  +M G+ARG GSL  H+V G+A S SL+T
Sbjct:  208 HYLTLLRNNIPALLGSLAFFGNPVGLIRGLGDGVSDFVNEPMKGLKRSVEELNPTFVMDGVARGTGSLARHTVSGIADSASLLT 291
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BLAST of mRNA_H-canaliculatus_F_contig1263.2202.1 vs. uniprot
Match: A0A7S2U5Y0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5Y0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.010e-19
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   43 HYERELKQQAFLMLGSLEAFGNPVGLLRGMGQGMQDFVKEPVLGLLKSVEDLAPEELMHGMARGAGSLLNHSVGGVAKSVSLIT 294
            HY   L+     +LGSL AFGNP+GL+RG+G G+ DFV EPV GL +SV++L P  ++ G+ARG  SL  H++GG A S SL+T
Sbjct:  148 HYLDSLRSNVPALLGSLAAFGNPIGLIRGLGDGVSDFVSEPVKGLKRSVKELDPSFVVDGVARGTESLARHTLGGFADSASLLT 231
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BLAST of mRNA_H-canaliculatus_F_contig1263.2202.1 vs. uniprot
Match: A0A7S0CCM6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCM6_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.670e-18
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:   43 HYERELKQQAFLMLGSLEAFGNPVGLLRGMGQGMQDFVKEPVLGLLKSVEDLAPEELMHGMARGAGSLLNHSVGGVAKSVSLIT 294
            HY    +     + GSL AFGNPVGL+RG+G G+ DFV EP+ GL KSV +L P   + G+ARG GSL  H+VG +A S SL+T
Sbjct:  412 HYLAAFRGNLPALFGSLSAFGNPVGLIRGLGDGVSDFVSEPIKGLKKSVAELDPIFALDGVARGTGSLARHTVGSIAGSASLLT 495
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BLAST of mRNA_H-canaliculatus_F_contig1263.2202.1 vs. uniprot
Match: A0A7R9UE31_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE31_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.180e-18
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:   40 EHYERELKQQAFLMLGSLEAFGNPVGLLRGMGQGMQDFVKEPVLGLLKSVEDLAPEELMHGMARGAGSLLNHSVGGVAKSVSLITGRL 303
            +HYERE ++    ++G+L   GNP+GL+R    G +DFV EP+LGL+ S+E   P  L+ G  RG  SLL +SVGGV  S SL+T  L
Sbjct:  773 QHYEREARRHVLELIGALHLLGNPIGLMRSFRDGAKDFVAEPMLGLMDSIEQAKPAALVKGFKRGTTSLLKNSVGGVVNSASLLTDML 860
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1263.2202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMF7_ECTSI6.980e-5295.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXT8_9PHAE2.040e-5195.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C849_9STRA6.220e-2863.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9WT54_9STRA2.730e-2559.52Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]
A0A7S2LN01_9STRA4.490e-2154.76Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2PQX2_9STRA4.580e-2154.76Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7R9ZE76_9STRA6.970e-2054.76Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2U5Y0_9STRA3.010e-1952.38Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0CCM6_9STRA1.670e-1852.38Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7R9UE31_9STRA3.180e-1847.73Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1263contigH-canaliculatus_F_contig1263:1225..1676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.7
Seed ortholog evalue4e-41
Seed eggNOG ortholog2880.D7FMF7
KEGG koko:K19525
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1263.2202.1prot_H-canaliculatus_F_contig1263.2202.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1263 1225..1652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928982.5730503-CDS-H-canaliculatus_F_contig1263:1224..13891622928982.5730503-CDS-H-canaliculatus_F_contig1263:1224..1389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1263 1225..1389 -
1696845637.9354327-CDS-H-canaliculatus_F_contig1263:1224..13891696845637.9354327-CDS-H-canaliculatus_F_contig1263:1224..1389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1263 1225..1389 -
1622928982.5880795-CDS-H-canaliculatus_F_contig1263:1538..16521622928982.5880795-CDS-H-canaliculatus_F_contig1263:1538..1652Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1263 1539..1652 -
1696845637.9476385-CDS-H-canaliculatus_F_contig1263:1538..16521696845637.9476385-CDS-H-canaliculatus_F_contig1263:1538..1652Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1263 1539..1652 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928982.6117613-UTR-H-canaliculatus_F_contig1263:1652..16761622928982.6117613-UTR-H-canaliculatus_F_contig1263:1652..1676Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1263 1653..1676 -
1696845637.9592302-UTR-H-canaliculatus_F_contig1263:1652..16761696845637.9592302-UTR-H-canaliculatus_F_contig1263:1652..1676Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1263 1653..1676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1263.2202.1

>prot_H-canaliculatus_F_contig1263.2202.1 ID=prot_H-canaliculatus_F_contig1263.2202.1|Name=mRNA_H-canaliculatus_F_contig1263.2202.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp
MLTGREHYERELKQQAFLMLGSLEAFGNPVGLLRGMGQGMQDFVKEPVLG
LLKSVEDLAPEELMHGMARGAGSLLNHSVGGVAKSVSLITGRL
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mRNA from alignment at H-canaliculatus_F_contig1263:1225..1676-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1263.2202.1 ID=mRNA_H-canaliculatus_F_contig1263.2202.1|Name=mRNA_H-canaliculatus_F_contig1263.2202.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=452bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1263:1225..1676- (Hapterophycus canaliculatus Oshoro5f female)
GCCACGACCACGCGATCCCGGCTGATGCTCACCGGCCGAGAGCACTACGA
AAGGGAGCTGAAGCAGCAAGCATTTTTGATGCTTGGGAGCCTCGAGGCTT
TCGGCAATCCCGTTGGCCTCCTGCGCGGTATGGGCCAGGTATGCACGTGC
AAGACGGGCTGTATTTTCTCATGCTCCGTCTGCGGCCGTCACCGCCGTGT
GCACTCACCTCCTGCCCATTCTGAGGAGCTCGCTCTTTTTTGACCGACGG
ATTGTTGGAACGCGTCGTTTGGCTCTCACTTACGCAGGGAATGCAAGACT
TCGTGAAGGAGCCAGTGCTTGGGTTACTGAAGAGCGTGGAAGACCTAGCG
CCCGAAGAGCTCATGCACGGGATGGCCAGGGGTGCTGGGAGCCTGTTGAA
CCATTCCGTAGGGGGAGTTGCGAAGTCGGTCTCCCTCATCACAGGTAGAC
TA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1263:1225..1676-

>mRNA_H-canaliculatus_F_contig1263.2202.1 ID=mRNA_H-canaliculatus_F_contig1263.2202.1|Name=mRNA_H-canaliculatus_F_contig1263.2202.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1263:1225..1676- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCACCGGCCGAGAGCACTACGAAAGGGAGCTGAAGCAGCAAGCATT
TTTGATGCTTGGGAGCCTCGAGGCTTTCGGCAATCCCGTTGGCCTCCTGC
GCGGTATGGGCCAGATGCTCACCGGCCGAGAGCACTACGAAAGGGAGCTG
AAGCAGCAAGCATTTTTGATGCTTGGGAGCCTCGAGGCTTTCGGCAATCC
CGTTGGCCTCCTGCGCGGTATGGGCCAGGGAATGCAAGACTTCGTGAAGG
AGCCAGTGCTTGGGTTACTGAAGAGCGTGGAAGACCTAGCGCCCGAAGAG
CTCATGCACGGGATGGCCAGGGGTGCTGGGAGCCTGTTGAACCATTCCGT
AGGGGGAGTTGCGAAGTCGGTCTCCCTCATCACAGGTAGACTAGGAATGC
AAGACTTCGTGAAGGAGCCAGTGCTTGGGTTACTGAAGAGCGTGGAAGAC
CTAGCGCCCGAAGAGCTCATGCACGGGATGGCCAGGGGTGCTGGGAGCCT
GTTGAACCATTCCGTAGGGGGAGTTGCGAAGTCGGTCTCCCTCATCACAG
GTAGACTA
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